Wall clock time and date at job start Wed Apr 1 2020 05:48:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46893 * 111.00078 * 2 1 4 4 C 1.39193 * 111.00188 * 123.96130 * 2 1 3 5 5 C 1.39137 * 119.93267 * 300.01914 * 4 2 1 6 6 C 1.37655 * 120.09298 * 180.02562 * 5 4 2 7 7 C 1.39766 * 119.97057 * 359.97438 * 6 5 4 8 8 C 1.47521 * 120.06353 * 179.97438 * 7 6 5 9 9 O 1.21599 * 119.99861 * 6.68905 * 8 7 6 10 10 N 1.34777 * 120.00041 * 186.68099 * 8 7 6 11 11 C 1.47286 * 136.54601 * 4.46796 * 10 8 7 12 12 C 1.54075 * 87.60774 * 151.36707 * 11 10 8 13 13 H 1.09004 * 115.04562 * 142.51078 * 12 11 10 14 14 C 1.53065 * 111.39483 * 273.97682 * 12 11 10 15 15 C 1.53147 * 109.21575 * 142.40007 * 14 12 11 16 16 N 1.46540 * 108.24948 * 301.58725 * 15 14 12 17 17 C 1.36938 * 119.73997 * 236.40215 * 16 15 14 18 18 H 1.08003 * 119.99847 * 149.57427 * 17 16 15 19 19 C 1.38807 * 119.99616 * 329.56900 * 17 16 15 20 20 N 1.31627 * 119.99924 * 166.03038 * 19 17 16 21 21 Si 1.86798 * 120.00608 * 346.03000 * 19 17 16 22 22 H 1.48499 * 109.47128 * 95.29484 * 21 19 17 23 23 H 1.48496 * 109.47380 * 215.29895 * 21 19 17 24 24 H 1.48501 * 109.47166 * 335.29940 * 21 19 17 25 25 C 1.45701 * 120.51931 * 56.42172 * 16 15 14 26 26 C 1.46469 * 136.54434 * 184.09793 * 10 8 7 27 27 H 1.09005 * 111.44014 * 96.38387 * 26 10 8 28 28 C 1.39807 * 119.87471 * 359.73727 * 7 6 5 29 29 C 1.37794 * 119.90220 * 0.51884 * 28 7 6 30 30 F 1.35102 * 119.98890 * 179.77384 * 29 28 7 31 31 H 1.09007 * 109.46233 * 296.04127 * 1 2 3 32 32 H 1.08994 * 109.47148 * 56.03568 * 1 2 3 33 33 H 1.08998 * 109.47039 * 176.04209 * 1 2 3 34 34 H 1.09005 * 109.47461 * 183.95592 * 3 2 1 35 35 H 1.09003 * 109.47631 * 303.96148 * 3 2 1 36 36 H 1.09004 * 109.47171 * 63.95768 * 3 2 1 37 37 H 1.08001 * 119.95648 * 0.02562 * 5 4 2 38 38 H 1.08006 * 120.01256 * 180.02562 * 6 5 4 39 39 H 1.08997 * 113.53302 * 266.05392 * 11 10 8 40 40 H 1.09005 * 113.52667 * 36.61575 * 11 10 8 41 41 H 1.09000 * 109.51292 * 262.31976 * 14 12 11 42 42 H 1.09002 * 109.51435 * 22.42035 * 14 12 11 43 43 H 1.08994 * 109.70852 * 61.27925 * 15 14 12 44 44 H 1.09001 * 109.70612 * 181.86055 * 15 14 12 45 45 H 0.96989 * 120.00516 * 180.02562 * 20 19 17 46 46 H 1.09006 * 108.78630 * 80.89930 * 25 16 15 47 47 H 1.08999 * 108.78907 * 199.22251 * 25 16 15 48 48 H 1.08006 * 120.05529 * 180.27566 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9679 -0.7259 1.0778 5 6 1.6536 -0.3428 2.3779 6 6 2.1456 -1.0580 3.4463 7 6 2.9616 -2.1710 3.2250 8 6 3.4904 -2.9386 4.3684 9 8 3.1207 -2.6798 5.4976 10 7 4.3833 -3.9268 4.1616 11 6 5.1189 -4.4796 3.0115 12 6 6.2282 -4.8880 3.9997 13 1 6.7063 -5.8443 3.7873 14 6 7.2149 -3.7420 4.2363 15 6 7.6425 -3.7405 5.7068 16 7 6.4416 -3.5948 6.5338 17 6 6.3551 -2.5632 7.4302 18 1 5.3924 -2.1380 7.6729 19 6 7.5047 -2.0642 8.0270 20 7 7.4683 -0.9140 8.6660 21 14 9.1034 -3.0247 7.9232 22 1 9.9105 -2.5209 6.7831 23 1 9.8673 -2.8523 9.1849 24 1 8.8034 -4.4647 7.7191 25 6 5.3390 -4.5392 6.4101 26 6 5.0653 -4.9320 4.9799 27 1 4.5491 -5.8914 4.9449 28 6 3.2717 -2.5584 1.9180 29 6 2.7808 -1.8355 0.8525 30 9 3.0831 -2.2056 -0.4112 31 1 -0.3632 0.4512 0.9234 32 1 -0.3633 0.5741 -0.8523 33 1 -0.3633 -1.0252 -0.0709 34 1 3.0829 1.3432 -0.0709 35 1 1.5898 1.9164 -0.8524 36 1 1.7045 1.8723 0.9234 37 1 1.0227 0.5169 2.5492 38 1 1.9004 -0.7598 4.4549 39 1 4.6199 -5.3277 2.5427 40 1 5.4326 -3.7237 2.2916 41 1 8.0910 -3.8793 3.6025 42 1 6.7357 -2.7932 3.9946 43 1 8.1415 -4.6797 5.9455 44 1 8.3201 -2.9070 5.8917 45 1 8.2716 -0.5651 9.0827 46 1 5.5785 -5.4355 6.9826 47 1 4.4401 -4.0862 6.8282 48 1 3.8984 -3.4206 1.7436 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084853878.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:48:09 Heat of formation + Delta-G solvation = 50.677693 kcal Electronic energy + Delta-G solvation = -31619.348428 eV Core-core repulsion = 27399.238892 eV Total energy + Delta-G solvation = -4220.109535 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -48.91969 -41.06782 -39.90875 -38.09742 -36.41930 -35.64295 -32.06267 -31.15409 -31.11745 -30.49595 -28.88533 -27.97462 -27.34943 -25.43110 -23.91342 -23.65265 -22.67317 -22.06099 -21.20155 -20.38138 -18.51558 -17.47942 -17.11271 -16.79937 -16.71993 -16.00115 -15.92909 -15.69994 -15.39590 -15.17379 -14.97489 -14.69096 -14.46027 -13.90197 -13.88376 -13.66452 -13.53883 -13.14228 -12.94592 -12.82738 -12.79654 -12.54637 -12.24674 -12.11173 -12.07552 -11.99373 -11.87434 -11.70923 -11.40278 -11.10152 -10.90572 -10.75629 -10.18288 -9.88071 -9.65365 -9.37281 -9.33614 -9.23674 -8.96241 -8.82907 -8.66358 -8.36419 -6.84807 -5.83162 -3.24860 0.49668 0.97708 2.78470 2.92891 3.33866 3.37639 3.50028 3.52585 3.69022 4.00428 4.34567 4.44157 4.51113 4.58054 4.71625 4.88652 4.93563 4.94445 4.97341 4.99293 5.12151 5.14362 5.21191 5.28469 5.31831 5.42777 5.48231 5.51033 5.53672 5.54063 5.64962 5.76247 5.79289 5.81252 5.94859 5.98778 6.10730 6.19312 6.27950 6.33602 6.36999 6.42172 6.57301 6.62591 6.80428 6.92495 6.94593 7.97456 8.12984 8.41741 8.48601 9.07731 9.82158 10.15042 11.33145 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.015851 B = 0.003122 C = 0.002934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1765.986173 B = 8965.310778 C = 9541.672321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.510 5.510 3 C 0.027 3.973 4 C 0.068 3.932 5 C -0.129 4.129 6 C -0.060 4.060 7 C -0.090 4.090 8 C 0.587 3.413 9 O -0.512 6.512 10 N -0.627 5.627 11 C 0.085 3.915 12 C -0.110 4.110 13 H 0.098 0.902 14 C -0.118 4.118 15 C 0.126 3.874 16 N -0.598 5.598 17 C -0.250 4.250 18 H 0.086 0.914 19 C 0.018 3.982 20 N -0.916 5.916 21 Si 0.890 3.110 22 H -0.292 1.292 23 H -0.306 1.306 24 H -0.267 1.267 25 C 0.144 3.856 26 C 0.129 3.871 27 H 0.082 0.918 28 C -0.131 4.131 29 C 0.115 3.885 30 F -0.127 7.127 31 H 0.035 0.965 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.035 0.965 37 H 0.135 0.865 38 H 0.146 0.854 39 H 0.085 0.915 40 H 0.081 0.919 41 H 0.060 0.940 42 H 0.067 0.933 43 H 0.031 0.969 44 H 0.072 0.928 45 H 0.261 0.739 46 H 0.026 0.974 47 H 0.080 0.920 48 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.785 -3.506 -20.169 23.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.231 5.231 3 C -0.120 4.120 4 C -0.027 4.027 5 C -0.149 4.149 6 C -0.079 4.079 7 C -0.094 4.094 8 C 0.376 3.624 9 O -0.388 6.388 10 N -0.362 5.362 11 C -0.038 4.038 12 C -0.129 4.129 13 H 0.117 0.883 14 C -0.158 4.158 15 C 0.000 4.000 16 N -0.321 5.321 17 C -0.379 4.379 18 H 0.104 0.896 19 C -0.179 4.179 20 N -0.560 5.560 21 Si 0.722 3.278 22 H -0.220 1.220 23 H -0.235 1.235 24 H -0.192 1.192 25 C 0.018 3.982 26 C 0.025 3.975 27 H 0.100 0.900 28 C -0.150 4.150 29 C 0.094 3.906 30 F -0.105 7.105 31 H 0.053 0.947 32 H 0.094 0.906 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.095 0.905 36 H 0.054 0.946 37 H 0.153 0.847 38 H 0.163 0.837 39 H 0.103 0.897 40 H 0.099 0.901 41 H 0.078 0.922 42 H 0.086 0.914 43 H 0.049 0.951 44 H 0.090 0.910 45 H 0.070 0.930 46 H 0.044 0.956 47 H 0.098 0.902 48 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -10.944 -3.293 -19.895 22.944 hybrid contribution 0.708 -0.026 0.288 0.765 sum -10.237 -3.319 -19.607 22.366 Atomic orbital electron populations 1.22492 0.85301 1.02943 1.01206 1.59378 1.08896 1.14618 1.40195 1.22499 1.01358 0.86872 1.01222 1.18898 0.98605 0.95190 0.90026 1.21464 1.01099 1.00665 0.91704 1.21251 0.93868 0.92543 1.00284 1.19910 0.99649 0.97349 0.92459 1.17360 0.77837 0.79101 0.88088 1.90850 1.58328 1.66316 1.23280 1.49225 1.42370 1.32111 1.12518 1.23554 0.91350 0.97610 0.91249 1.22730 0.94533 1.00261 0.95342 0.88343 1.21878 0.97337 0.97066 0.99489 1.21296 0.90372 0.99404 0.88911 1.43773 1.14799 1.30836 1.42678 1.19009 0.95574 1.07254 1.16069 0.89613 1.25333 0.97898 0.97086 0.97614 1.69785 1.28573 1.18388 1.39274 0.86876 0.84125 0.81454 0.75381 1.22003 1.23524 1.19150 1.20274 0.93394 0.93303 0.91268 1.22237 0.89906 0.90022 0.95335 0.90018 1.21767 1.00913 1.01354 0.91014 1.17326 0.98872 0.94994 0.79381 1.91506 1.91385 1.90681 1.36963 0.94662 0.90562 0.91004 0.90873 0.90543 0.94604 0.84706 0.83664 0.89655 0.90069 0.92164 0.91447 0.95103 0.91049 0.92950 0.95634 0.90201 0.83073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.34 60.07 0.56 0.77 16 2 N -0.51 -5.09 4.80 -186.78 -0.90 -5.99 16 3 C 0.03 0.22 9.38 60.06 0.56 0.78 16 4 C 0.07 0.78 4.73 -83.76 -0.40 0.38 16 5 C -0.13 -1.43 8.53 -39.46 -0.34 -1.77 16 6 C -0.06 -0.81 9.58 -39.22 -0.38 -1.18 16 7 C -0.09 -1.33 5.88 -104.96 -0.62 -1.94 16 8 C 0.59 10.52 7.95 -12.48 -0.10 10.42 16 9 O -0.51 -11.32 15.53 5.28 0.08 -11.24 16 10 N -0.63 -9.89 3.32 -189.34 -0.63 -10.52 16 11 C 0.09 0.97 5.56 -11.56 -0.06 0.91 16 12 C -0.11 -1.46 4.57 -90.46 -0.41 -1.88 16 13 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 14 C -0.12 -1.97 5.69 -26.62 -0.15 -2.12 16 15 C 0.13 2.69 4.07 -3.94 -0.02 2.67 16 16 N -0.60 -14.48 2.78 -175.06 -0.49 -14.96 16 17 C -0.25 -7.32 9.98 -15.06 -0.15 -7.47 16 18 H 0.09 2.81 8.02 -52.48 -0.42 2.39 16 19 C 0.02 0.55 5.32 -17.43 -0.09 0.46 16 20 N -0.92 -29.13 13.97 55.49 0.78 -28.35 16 21 Si 0.89 22.74 24.30 -169.99 -4.13 18.61 16 22 H -0.29 -7.19 6.78 56.52 0.38 -6.81 16 23 H -0.31 -8.03 7.11 56.52 0.40 -7.63 16 24 H -0.27 -6.50 6.00 56.52 0.34 -6.16 16 25 C 0.14 2.97 6.13 -5.57 -0.03 2.94 16 26 C 0.13 2.03 3.99 -77.98 -0.31 1.72 16 27 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 28 C -0.13 -1.63 9.12 -39.16 -0.36 -1.99 16 29 C 0.11 1.41 7.30 -39.32 -0.29 1.13 16 30 F -0.13 -1.61 17.07 2.25 0.04 -1.57 16 31 H 0.03 0.24 7.10 -51.92 -0.37 -0.12 16 32 H 0.08 0.46 8.12 -51.93 -0.42 0.04 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.08 0.49 8.12 -51.93 -0.42 0.07 16 36 H 0.04 0.27 7.32 -51.93 -0.38 -0.11 16 37 H 0.14 1.20 6.99 -52.49 -0.37 0.84 16 38 H 0.15 2.03 7.66 -52.48 -0.40 1.63 16 39 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.08 0.87 6.53 -51.93 -0.34 0.53 16 41 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.07 1.26 7.68 -51.93 -0.40 0.86 16 43 H 0.03 0.64 6.82 -51.93 -0.35 0.28 16 44 H 0.07 1.71 4.19 -51.93 -0.22 1.49 16 45 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 46 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.08 1.86 6.44 -51.93 -0.33 1.53 16 48 H 0.15 1.64 4.15 -52.48 -0.22 1.42 16 LS Contribution 373.20 15.07 5.62 5.62 Total: -1.00 -35.41 373.20 -9.02 -44.42 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -6.82 Total: 0.16 kcal Atomic # 6 Polarization: 6.41 SS G_CDS: -2.58 Total: 3.83 kcal Atomic # 7 Polarization: -58.59 SS G_CDS: -1.24 Total: -59.83 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: 0.08 Total: -11.24 kcal Atomic # 9 Polarization: -1.61 SS G_CDS: 0.04 Total: -1.57 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -4.13 Total: 18.61 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -35.41 -9.02 -44.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084853878.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.101 kcal (2) G-P(sol) polarization free energy of solvation -35.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds