Wall clock time and date at job start Wed Apr 1 2020 05:48:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46893 * 111.00078 * 2 1 4 4 C 1.39193 * 111.00188 * 123.96130 * 2 1 3 5 5 C 1.39137 * 119.93267 * 300.01914 * 4 2 1 6 6 C 1.37655 * 120.09298 * 180.02562 * 5 4 2 7 7 C 1.39766 * 119.97057 * 359.97438 * 6 5 4 8 8 C 1.47521 * 120.06353 * 179.97438 * 7 6 5 9 9 O 1.21599 * 119.99861 * 6.68905 * 8 7 6 10 10 N 1.34777 * 120.00041 * 186.68099 * 8 7 6 11 11 C 1.47286 * 136.54601 * 4.46796 * 10 8 7 12 12 C 1.54075 * 87.60774 * 151.36707 * 11 10 8 13 13 H 1.09004 * 115.04562 * 142.51078 * 12 11 10 14 14 C 1.53065 * 111.39483 * 273.97682 * 12 11 10 15 15 C 1.53147 * 109.21575 * 142.40007 * 14 12 11 16 16 N 1.46540 * 108.24948 * 301.58725 * 15 14 12 17 17 C 1.36938 * 119.73997 * 236.40215 * 16 15 14 18 18 H 1.08003 * 119.99847 * 149.57427 * 17 16 15 19 19 C 1.38807 * 119.99616 * 329.56900 * 17 16 15 20 20 N 1.31627 * 119.99924 * 166.03038 * 19 17 16 21 21 Si 1.86798 * 120.00608 * 346.03000 * 19 17 16 22 22 H 1.48499 * 109.47128 * 95.29484 * 21 19 17 23 23 H 1.48496 * 109.47380 * 215.29895 * 21 19 17 24 24 H 1.48501 * 109.47166 * 335.29940 * 21 19 17 25 25 C 1.45701 * 120.51931 * 56.42172 * 16 15 14 26 26 C 1.46469 * 136.54434 * 184.09793 * 10 8 7 27 27 H 1.09005 * 111.44014 * 96.38387 * 26 10 8 28 28 C 1.39807 * 119.87471 * 359.73727 * 7 6 5 29 29 C 1.37794 * 119.90220 * 0.51884 * 28 7 6 30 30 F 1.35102 * 119.98890 * 179.77384 * 29 28 7 31 31 H 1.09007 * 109.46233 * 296.04127 * 1 2 3 32 32 H 1.08994 * 109.47148 * 56.03568 * 1 2 3 33 33 H 1.08998 * 109.47039 * 176.04209 * 1 2 3 34 34 H 1.09005 * 109.47461 * 183.95592 * 3 2 1 35 35 H 1.09003 * 109.47631 * 303.96148 * 3 2 1 36 36 H 1.09004 * 109.47171 * 63.95768 * 3 2 1 37 37 H 1.08001 * 119.95648 * 0.02562 * 5 4 2 38 38 H 1.08006 * 120.01256 * 180.02562 * 6 5 4 39 39 H 1.08997 * 113.53302 * 266.05392 * 11 10 8 40 40 H 1.09005 * 113.52667 * 36.61575 * 11 10 8 41 41 H 1.09000 * 109.51292 * 262.31976 * 14 12 11 42 42 H 1.09002 * 109.51435 * 22.42035 * 14 12 11 43 43 H 1.08994 * 109.70852 * 61.27925 * 15 14 12 44 44 H 1.09001 * 109.70612 * 181.86055 * 15 14 12 45 45 H 0.96989 * 120.00516 * 180.02562 * 20 19 17 46 46 H 1.09006 * 108.78630 * 80.89930 * 25 16 15 47 47 H 1.08999 * 108.78907 * 199.22251 * 25 16 15 48 48 H 1.08006 * 120.05529 * 180.27566 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9679 -0.7259 1.0778 5 6 1.6536 -0.3428 2.3779 6 6 2.1456 -1.0580 3.4463 7 6 2.9616 -2.1710 3.2250 8 6 3.4904 -2.9386 4.3684 9 8 3.1207 -2.6798 5.4976 10 7 4.3833 -3.9268 4.1616 11 6 5.1189 -4.4796 3.0115 12 6 6.2282 -4.8880 3.9997 13 1 6.7063 -5.8443 3.7873 14 6 7.2149 -3.7420 4.2363 15 6 7.6425 -3.7405 5.7068 16 7 6.4416 -3.5948 6.5338 17 6 6.3551 -2.5632 7.4302 18 1 5.3924 -2.1380 7.6729 19 6 7.5047 -2.0642 8.0270 20 7 7.4683 -0.9140 8.6660 21 14 9.1034 -3.0247 7.9232 22 1 9.9105 -2.5209 6.7831 23 1 9.8673 -2.8523 9.1849 24 1 8.8034 -4.4647 7.7191 25 6 5.3390 -4.5392 6.4101 26 6 5.0653 -4.9320 4.9799 27 1 4.5491 -5.8914 4.9449 28 6 3.2717 -2.5584 1.9180 29 6 2.7808 -1.8355 0.8525 30 9 3.0831 -2.2056 -0.4112 31 1 -0.3632 0.4512 0.9234 32 1 -0.3633 0.5741 -0.8523 33 1 -0.3633 -1.0252 -0.0709 34 1 3.0829 1.3432 -0.0709 35 1 1.5898 1.9164 -0.8524 36 1 1.7045 1.8723 0.9234 37 1 1.0227 0.5169 2.5492 38 1 1.9004 -0.7598 4.4549 39 1 4.6199 -5.3277 2.5427 40 1 5.4326 -3.7237 2.2916 41 1 8.0910 -3.8793 3.6025 42 1 6.7357 -2.7932 3.9946 43 1 8.1415 -4.6797 5.9455 44 1 8.3201 -2.9070 5.8917 45 1 8.2716 -0.5651 9.0827 46 1 5.5785 -5.4355 6.9826 47 1 4.4401 -4.0862 6.8282 48 1 3.8984 -3.4206 1.7436 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084853878.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:48:06 Heat of formation + Delta-G solvation = 25.021353 kcal Electronic energy + Delta-G solvation = -31620.460970 eV Core-core repulsion = 27399.238892 eV Total energy + Delta-G solvation = -4221.222078 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -49.88639 -42.27149 -40.86958 -39.35270 -37.45741 -37.34579 -34.00062 -32.77415 -32.27094 -31.54296 -30.16519 -28.87504 -28.58538 -26.37260 -25.54021 -25.06990 -23.79673 -23.12499 -22.62173 -21.55244 -19.76456 -19.04563 -18.33368 -18.06974 -17.69795 -17.36352 -17.09690 -16.94745 -16.81122 -16.60869 -15.73872 -15.62618 -15.52401 -15.43812 -15.24632 -15.10554 -14.89060 -14.44959 -14.17479 -14.07643 -13.99260 -13.67849 -13.51568 -13.47223 -13.04809 -12.97695 -12.84501 -12.69471 -12.68572 -12.60095 -12.56443 -12.20710 -12.08844 -11.49835 -11.35573 -11.19661 -10.76889 -10.73683 -10.20312 -9.89438 -9.68817 -9.59190 -8.84855 -8.14974 -5.53675 -0.52711 -0.00048 1.28316 1.41216 1.51568 1.64582 1.77347 2.41220 2.54998 2.61345 3.03081 3.08725 3.25996 3.36092 3.40066 3.55783 3.82383 3.87387 3.96808 4.05374 4.12604 4.26834 4.30243 4.34303 4.39733 4.48219 4.49682 4.53140 4.56576 4.56887 4.64085 4.68836 4.77639 4.82805 4.85632 4.91615 4.94075 4.97210 5.01480 5.02404 5.10810 5.20309 5.25598 5.42259 5.53938 5.76298 5.91258 6.10561 6.13551 6.76522 6.97093 7.12309 7.66052 7.97812 9.06225 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.015851 B = 0.003122 C = 0.002934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1765.986173 B = 8965.310778 C = 9541.672321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.522 5.522 3 C 0.025 3.975 4 C 0.078 3.922 5 C -0.120 4.120 6 C -0.073 4.073 7 C -0.112 4.112 8 C 0.574 3.426 9 O -0.579 6.579 10 N -0.636 5.636 11 C 0.094 3.906 12 C -0.097 4.097 13 H 0.150 0.850 14 C -0.113 4.113 15 C 0.116 3.884 16 N -0.611 5.611 17 C -0.243 4.243 18 H 0.022 0.978 19 C -0.049 4.049 20 N -0.972 5.972 21 Si 0.972 3.028 22 H -0.273 1.273 23 H -0.316 1.316 24 H -0.241 1.241 25 C 0.141 3.859 26 C 0.118 3.882 27 H 0.124 0.876 28 C -0.116 4.116 29 C 0.107 3.893 30 F -0.126 7.126 31 H 0.042 0.958 32 H 0.095 0.905 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.097 0.903 36 H 0.040 0.960 37 H 0.157 0.843 38 H 0.126 0.874 39 H 0.134 0.866 40 H 0.092 0.908 41 H 0.101 0.899 42 H 0.036 0.964 43 H 0.054 0.946 44 H 0.043 0.957 45 H 0.261 0.739 46 H 0.039 0.961 47 H 0.034 0.966 48 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.580 -6.291 -24.600 27.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.244 5.244 3 C -0.121 4.121 4 C -0.017 4.017 5 C -0.140 4.140 6 C -0.093 4.093 7 C -0.115 4.115 8 C 0.366 3.634 9 O -0.460 6.460 10 N -0.370 5.370 11 C -0.027 4.027 12 C -0.116 4.116 13 H 0.168 0.832 14 C -0.152 4.152 15 C -0.008 4.008 16 N -0.335 5.335 17 C -0.373 4.373 18 H 0.039 0.961 19 C -0.241 4.241 20 N -0.619 5.619 21 Si 0.800 3.200 22 H -0.200 1.200 23 H -0.246 1.246 24 H -0.165 1.165 25 C 0.016 3.984 26 C 0.014 3.986 27 H 0.141 0.859 28 C -0.135 4.135 29 C 0.087 3.913 30 F -0.105 7.105 31 H 0.061 0.939 32 H 0.114 0.886 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.116 0.884 36 H 0.059 0.941 37 H 0.175 0.825 38 H 0.144 0.856 39 H 0.152 0.848 40 H 0.110 0.890 41 H 0.119 0.881 42 H 0.055 0.945 43 H 0.072 0.928 44 H 0.061 0.939 45 H 0.069 0.931 46 H 0.056 0.944 47 H 0.052 0.948 48 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -9.733 -6.140 -24.418 26.994 hybrid contribution 0.202 0.926 1.638 1.892 sum -9.531 -5.214 -22.780 25.238 Atomic orbital electron populations 1.22586 0.83787 1.03258 1.02502 1.59494 1.10295 1.15409 1.39160 1.22572 1.00916 0.86166 1.02477 1.19075 0.97452 0.94755 0.90458 1.21580 1.00745 1.00739 0.90946 1.21248 0.94587 0.93162 1.00294 1.19733 1.01257 0.98051 0.92433 1.17936 0.77857 0.79558 0.88086 1.90815 1.60910 1.68423 1.25870 1.49459 1.41339 1.31363 1.14793 1.23859 0.89801 0.99061 0.89939 1.22760 0.93401 1.01084 0.94323 0.83203 1.21787 0.99694 0.97386 0.96368 1.21432 0.88720 0.99053 0.91621 1.43833 1.16845 1.30243 1.42626 1.18719 0.93187 1.08216 1.17198 0.96055 1.26173 1.02450 0.97916 0.97597 1.69981 1.29901 1.20592 1.41414 0.85571 0.78393 0.80765 0.75259 1.19989 1.24602 1.16494 1.20341 0.90470 0.92296 0.95333 1.22501 0.92310 0.91398 0.92364 0.85898 1.21782 1.00413 1.01625 0.89701 1.17395 0.99248 0.95377 0.79317 1.91508 1.91427 1.90714 1.36816 0.93946 0.88596 0.91346 0.91807 0.88434 0.94105 0.82534 0.85591 0.84796 0.88954 0.88110 0.94512 0.92797 0.93905 0.93065 0.94369 0.94771 0.81067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.34 127.69 1.19 1.51 16 2 N -0.52 -9.27 4.80 -744.86 -3.57 -12.85 16 3 C 0.02 0.35 9.38 127.69 1.20 1.55 16 4 C 0.08 1.68 4.73 38.46 0.18 1.86 16 5 C -0.12 -2.63 8.53 22.35 0.19 -2.44 16 6 C -0.07 -2.09 9.58 22.50 0.22 -1.87 16 7 C -0.11 -3.35 5.88 -20.08 -0.12 -3.47 16 8 C 0.57 21.64 7.95 86.69 0.69 22.33 16 9 O -0.58 -28.37 15.53 -4.03 -0.06 -28.43 16 10 N -0.64 -19.32 3.32 -871.20 -2.89 -22.21 16 11 C 0.09 1.68 5.56 81.08 0.45 2.13 16 12 C -0.10 -2.07 4.57 -10.69 -0.05 -2.12 16 13 H 0.15 1.87 8.14 -2.38 -0.02 1.85 16 14 C -0.11 -3.37 5.69 30.67 0.17 -3.20 16 15 C 0.12 4.72 4.07 86.42 0.35 5.07 16 16 N -0.61 -30.24 2.78 -707.76 -1.97 -32.21 16 17 C -0.24 -15.22 9.98 84.03 0.84 -14.38 16 18 H 0.02 1.58 8.02 -2.91 -0.02 1.56 16 19 C -0.05 -3.03 5.32 84.86 0.45 -2.57 16 20 N -0.97 -65.66 13.97 21.65 0.30 -65.35 16 21 Si 0.97 48.07 24.30 68.60 1.67 49.74 16 22 H -0.27 -12.57 6.78 99.48 0.67 -11.90 16 23 H -0.32 -16.03 7.11 99.48 0.71 -15.33 16 24 H -0.24 -10.81 6.00 99.48 0.60 -10.21 16 25 C 0.14 5.93 6.13 85.82 0.53 6.46 16 26 C 0.12 3.41 3.99 38.50 0.15 3.57 16 27 H 0.12 2.62 8.14 -2.38 -0.02 2.60 16 28 C -0.12 -2.70 9.12 22.54 0.21 -2.49 16 29 C 0.11 2.44 7.30 22.44 0.16 2.60 16 30 F -0.13 -2.87 17.07 44.97 0.77 -2.11 16 31 H 0.04 0.49 7.10 -2.38 -0.02 0.47 16 32 H 0.10 0.87 8.12 -2.39 -0.02 0.85 16 33 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 35 H 0.10 0.98 8.12 -2.39 -0.02 0.97 16 36 H 0.04 0.54 7.32 -2.39 -0.02 0.53 16 37 H 0.16 2.64 6.99 -2.91 -0.02 2.62 16 38 H 0.13 4.01 7.66 -2.91 -0.02 3.99 16 39 H 0.13 1.26 8.14 -2.39 -0.02 1.25 16 40 H 0.09 1.51 6.53 -2.38 -0.02 1.50 16 41 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 42 H 0.04 1.31 7.68 -2.39 -0.02 1.29 16 43 H 0.05 1.98 6.82 -2.39 -0.02 1.96 16 44 H 0.04 1.99 4.19 -2.39 -0.01 1.98 16 45 H 0.26 16.54 8.31 -92.72 -0.77 15.77 16 46 H 0.04 1.49 8.14 -2.38 -0.02 1.47 16 47 H 0.03 1.73 6.44 -2.39 -0.02 1.71 16 48 H 0.17 3.11 4.15 -2.91 -0.01 3.09 16 Total: -1.00 -88.63 373.20 1.90 -86.73 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: 0.85 Total: 12.17 kcal Atomic # 6 Polarization: 7.71 SS G_CDS: 6.82 Total: 14.52 kcal Atomic # 7 Polarization: -124.49 SS G_CDS: -8.13 Total: -132.62 kcal Atomic # 8 Polarization: -28.37 SS G_CDS: -0.06 Total: -28.43 kcal Atomic # 9 Polarization: -2.87 SS G_CDS: 0.77 Total: -2.11 kcal Atomic # 14 Polarization: 48.07 SS G_CDS: 1.67 Total: 49.74 kcal Total: -88.63 1.90 -86.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084853878.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.748 kcal (2) G-P(sol) polarization free energy of solvation -88.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds