Wall clock time and date at job start Wed Apr 1 2020 06:04:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46505 * 120.00170 * 2 1 4 4 C 1.53002 * 109.46904 * 273.43320 * 3 2 1 5 5 H 1.09001 * 112.73698 * 317.50052 * 4 3 2 6 6 C 1.53496 * 113.47069 * 88.24792 * 4 3 2 7 7 C 1.53610 * 83.30348 * 140.82765 * 6 4 3 8 8 N 1.47067 * 88.00838 * 333.97788 * 7 6 4 9 9 C 1.36938 * 136.05689 * 207.03677 * 8 7 6 10 10 H 1.08004 * 119.99530 * 160.67676 * 9 8 7 11 11 C 1.38800 * 120.00443 * 340.67930 * 9 8 7 12 12 N 1.31613 * 120.00382 * 171.87647 * 11 9 8 13 13 Si 1.86802 * 119.99832 * 351.87383 * 11 9 8 14 14 H 1.48499 * 109.47232 * 86.95639 * 13 11 9 15 15 H 1.48500 * 109.47278 * 206.95300 * 13 11 9 16 16 H 1.48505 * 109.47292 * 326.95808 * 13 11 9 17 17 C 1.34781 * 120.00236 * 180.02562 * 2 1 3 18 18 O 1.21279 * 120.00305 * 176.09398 * 17 2 1 19 19 C 1.50707 * 119.99594 * 356.10121 * 17 2 1 20 20 H 1.08999 * 109.50853 * 38.28140 * 19 17 2 21 21 C 1.53097 * 109.50453 * 278.14524 * 19 17 2 22 22 O 1.43017 * 109.25817 * 183.21597 * 21 19 17 23 23 C 1.43017 * 113.73233 * 58.67694 * 22 21 19 24 24 C 1.53100 * 109.25878 * 301.32258 * 23 22 21 25 25 N 1.47012 * 109.50271 * 158.36610 * 19 17 2 26 26 C 1.46900 * 111.00352 * 302.32619 * 25 19 17 27 27 C 1.53004 * 109.47001 * 164.28029 * 26 25 19 28 28 F 1.39899 * 109.46819 * 64.12463 * 27 26 25 29 29 F 1.39892 * 109.47120 * 304.12109 * 27 26 25 30 30 H 1.09006 * 109.46883 * 269.99685 * 1 2 3 31 31 H 1.08996 * 109.46953 * 29.99809 * 1 2 3 32 32 H 1.09003 * 109.46721 * 149.99795 * 1 2 3 33 33 H 1.09006 * 109.46742 * 33.42817 * 3 2 1 34 34 H 1.08992 * 109.47160 * 153.42963 * 3 2 1 35 35 H 1.09002 * 114.20032 * 254.43173 * 6 4 3 36 36 H 1.09001 * 114.20504 * 27.25285 * 6 4 3 37 37 H 1.09003 * 113.50309 * 219.18018 * 7 6 4 38 38 H 1.09005 * 113.46926 * 88.76835 * 7 6 4 39 39 H 0.97006 * 120.00216 * 179.97438 * 12 11 9 40 40 H 1.08997 * 109.51157 * 303.16244 * 21 19 17 41 41 H 1.09004 * 109.50168 * 63.24535 * 21 19 17 42 42 H 1.08994 * 109.50836 * 61.26172 * 23 22 21 43 43 H 1.09006 * 109.50020 * 181.34986 * 23 22 21 44 44 H 1.08998 * 109.50748 * 296.92138 * 24 23 22 45 45 H 1.08996 * 109.50728 * 176.78406 * 24 23 22 46 46 H 1.09002 * 109.47089 * 44.28135 * 26 25 19 47 47 H 1.08999 * 109.46697 * 284.27956 * 26 25 19 48 48 H 1.09004 * 109.46840 * 184.11715 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.3777 1.7536 -1.4399 5 1 2.6522 0.9503 -2.1237 6 6 1.2122 2.6150 -1.9453 7 6 2.3353 3.4264 -2.6086 8 7 3.2388 2.9403 -1.5549 9 6 4.3799 3.3931 -0.9483 10 1 4.6771 2.9934 0.0100 11 6 5.1546 4.3659 -1.5649 12 7 6.1590 4.9162 -0.9164 13 14 4.7716 4.8939 -3.3153 14 1 3.7561 5.9771 -3.2946 15 1 6.0113 5.3901 -3.9651 16 1 4.2430 3.7344 -4.0778 17 6 2.1390 -1.1672 -0.0005 18 8 3.3496 -1.1684 -0.0721 19 6 1.3880 -2.4709 0.0876 20 1 0.4715 -2.4034 -0.4985 21 6 1.0406 -2.7628 1.5498 22 8 0.3948 -4.0359 1.6361 23 6 1.1847 -5.1172 1.1340 24 6 1.5336 -4.8492 -0.3325 25 7 2.2276 -3.5574 -0.4374 26 6 2.6313 -3.2878 -1.8239 27 6 3.7940 -4.2068 -2.2044 28 9 3.3641 -5.5379 -2.1781 29 9 4.8407 -4.0366 -1.2922 30 1 -0.3633 -0.0001 1.0277 31 1 -0.3633 0.8900 -0.5138 32 1 -0.3633 -0.8900 -0.5139 33 1 1.6364 2.0122 0.5662 34 1 3.1752 1.1238 0.4596 35 1 0.5525 2.1062 -2.6483 36 1 0.6783 3.1498 -1.1598 37 1 2.1706 4.5034 -2.5765 38 1 2.5984 3.0699 -3.6045 39 1 6.7006 5.5957 -1.3475 40 1 1.9535 -2.7765 2.1452 41 1 0.3720 -1.9886 1.9265 42 1 2.1018 -5.1995 1.7172 43 1 0.6201 -6.0465 1.2105 44 1 0.6191 -4.8203 -0.9248 45 1 2.1830 -5.6424 -0.7029 46 1 2.9452 -2.2480 -1.9153 47 1 1.7887 -3.4730 -2.4901 48 1 4.1414 -3.9571 -3.2070 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085743461.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:04:41 Heat of formation + Delta-G solvation = -85.405548 kcal Electronic energy + Delta-G solvation = -32989.699795 eV Core-core repulsion = 28332.920022 eV Total energy + Delta-G solvation = -4656.779772 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -49.02749 -46.95629 -40.80752 -39.15631 -38.21119 -36.15471 -35.27571 -32.31624 -31.90318 -30.64072 -28.88386 -28.42706 -26.74713 -26.31298 -24.95286 -23.35052 -22.79433 -22.59847 -21.06916 -19.50768 -19.18066 -17.81464 -17.59480 -17.21082 -16.99159 -16.77105 -16.53760 -16.32388 -15.84774 -15.54700 -15.12792 -15.02520 -14.75581 -14.29647 -14.19768 -14.00897 -13.79036 -13.39795 -13.37351 -13.30344 -13.09704 -12.85310 -12.71273 -12.45363 -12.33362 -12.11231 -12.01070 -11.83710 -11.74781 -11.71024 -11.38196 -11.15538 -10.76536 -10.73911 -10.27368 -10.15353 -10.05401 -9.96281 -9.56992 -9.35815 -8.93728 -8.74805 -8.43170 -7.10720 -5.89350 -3.27393 2.56130 2.81269 3.24563 3.33984 3.42515 3.44835 3.56209 3.71335 4.09153 4.29039 4.39148 4.52515 4.54134 4.57137 4.65037 4.72703 4.76646 4.88166 4.94040 5.04024 5.12247 5.20030 5.22884 5.28875 5.34832 5.38087 5.40416 5.52461 5.55107 5.62929 5.64549 5.74333 5.87706 6.05226 6.18447 6.22677 6.34429 6.40621 6.43835 6.50271 6.56956 6.74430 6.99420 7.22568 7.42921 8.23042 8.37647 8.70713 9.64682 10.33923 11.27578 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.013885 B = 0.003224 C = 0.002891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2016.075793 B = 8681.947574 C = 9682.661417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.610 5.610 3 C 0.116 3.884 4 C 0.135 3.865 5 H 0.046 0.954 6 C -0.156 4.156 7 C 0.098 3.902 8 N -0.615 5.615 9 C -0.222 4.222 10 H 0.099 0.901 11 C 0.018 3.982 12 N -0.921 5.921 13 Si 0.886 3.114 14 H -0.287 1.287 15 H -0.299 1.299 16 H -0.268 1.268 17 C 0.509 3.491 18 O -0.500 6.500 19 C 0.032 3.968 20 H 0.074 0.926 21 C 0.079 3.921 22 O -0.379 6.379 23 C 0.062 3.938 24 C 0.001 3.999 25 N -0.509 5.509 26 C -0.002 4.002 27 C 0.274 3.726 28 F -0.209 7.209 29 F -0.186 7.186 30 H 0.057 0.943 31 H 0.079 0.921 32 H 0.066 0.934 33 H 0.080 0.920 34 H 0.090 0.910 35 H 0.060 0.940 36 H 0.083 0.917 37 H 0.051 0.949 38 H 0.043 0.957 39 H 0.263 0.737 40 H 0.069 0.931 41 H 0.105 0.895 42 H 0.064 0.936 43 H 0.102 0.898 44 H 0.045 0.955 45 H 0.112 0.888 46 H 0.116 0.884 47 H 0.063 0.937 48 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.613 -19.719 -0.564 25.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.345 5.345 3 C -0.007 4.007 4 C 0.028 3.972 5 H 0.063 0.937 6 C -0.194 4.194 7 C -0.028 4.028 8 N -0.343 5.343 9 C -0.348 4.348 10 H 0.117 0.883 11 C -0.180 4.180 12 N -0.566 5.566 13 Si 0.716 3.284 14 H -0.214 1.214 15 H -0.227 1.227 16 H -0.193 1.193 17 C 0.294 3.706 18 O -0.374 6.374 19 C -0.080 4.080 20 H 0.092 0.908 21 C 0.001 3.999 22 O -0.297 6.297 23 C -0.015 4.015 24 C -0.127 4.127 25 N -0.235 5.235 26 C -0.130 4.130 27 C 0.220 3.780 28 F -0.191 7.191 29 F -0.167 7.167 30 H 0.076 0.924 31 H 0.097 0.903 32 H 0.085 0.915 33 H 0.098 0.902 34 H 0.109 0.891 35 H 0.078 0.922 36 H 0.102 0.898 37 H 0.069 0.931 38 H 0.060 0.940 39 H 0.073 0.927 40 H 0.088 0.912 41 H 0.123 0.877 42 H 0.082 0.918 43 H 0.120 0.880 44 H 0.063 0.937 45 H 0.129 0.871 46 H 0.134 0.866 47 H 0.082 0.918 48 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -15.317 -19.572 -0.095 24.853 hybrid contribution -0.502 0.461 -1.766 1.893 sum -15.819 -19.112 -1.862 24.879 Atomic orbital electron populations 1.21905 0.79951 1.03321 1.01856 1.47932 1.06802 1.06378 1.73400 1.21832 0.97866 0.82369 0.98596 1.22377 0.89649 0.91113 0.94099 0.93691 1.23656 0.95989 0.99341 1.00388 1.22644 0.88802 0.98122 0.93203 1.46152 1.28551 1.17586 1.41967 1.18633 0.96768 1.18629 1.00746 0.88323 1.24949 0.95717 0.99340 0.97946 1.69710 1.20230 1.29361 1.37281 0.86801 0.76544 0.78574 0.86466 1.21376 1.22687 1.19279 1.20133 0.88196 0.84498 0.77802 1.90814 1.13262 1.86464 1.46817 1.22402 0.95219 0.90768 0.99573 0.90839 1.22510 0.98961 0.86127 0.92294 1.88002 1.43012 1.15433 1.83302 1.22729 0.96208 0.89993 0.92575 1.23326 0.98437 0.92498 0.98408 1.61834 1.41069 1.01416 1.19144 1.23372 0.97136 1.02656 0.89882 1.21850 0.85199 0.77730 0.93263 1.92844 1.90212 1.38887 1.97147 1.93048 1.58629 1.95006 1.70051 0.92448 0.90252 0.91519 0.90190 0.89144 0.92169 0.89826 0.93060 0.93964 0.92708 0.91227 0.87691 0.91794 0.88041 0.93691 0.87055 0.86581 0.91847 0.86922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.61 9.82 59.85 0.59 1.20 16 2 N -0.61 -7.91 2.87 -181.56 -0.52 -8.43 16 3 C 0.12 1.94 5.37 -4.04 -0.02 1.92 16 4 C 0.14 2.53 4.31 -72.40 -0.31 2.22 16 5 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 6 C -0.16 -2.43 7.32 -26.16 -0.19 -2.62 16 7 C 0.10 2.00 5.58 -8.46 -0.05 1.96 16 8 N -0.61 -14.67 3.39 -176.82 -0.60 -15.27 16 9 C -0.22 -6.33 11.02 -15.06 -0.17 -6.49 16 10 H 0.10 3.01 8.06 -52.48 -0.42 2.59 16 11 C 0.02 0.54 5.50 -17.44 -0.10 0.44 16 12 N -0.92 -28.97 13.97 55.49 0.78 -28.20 16 13 Si 0.89 22.75 25.31 -169.99 -4.30 18.44 16 14 H -0.29 -7.17 7.06 56.52 0.40 -6.77 16 15 H -0.30 -7.81 7.11 56.52 0.40 -7.41 16 16 H -0.27 -6.59 5.56 56.52 0.31 -6.28 16 17 C 0.51 7.29 5.82 -10.98 -0.06 7.23 16 18 O -0.50 -9.59 14.69 5.56 0.08 -9.51 16 19 C 0.03 0.36 1.70 -68.75 -0.12 0.24 16 20 H 0.07 0.69 6.15 -51.93 -0.32 0.37 16 21 C 0.08 0.81 6.24 37.21 0.23 1.05 16 22 O -0.38 -3.93 10.83 -35.23 -0.38 -4.31 16 23 C 0.06 0.55 7.01 37.21 0.26 0.81 16 24 C 0.00 0.01 5.32 -3.71 -0.02 -0.01 16 25 N -0.51 -5.98 4.08 -227.72 -0.93 -6.91 16 26 C 0.00 -0.02 4.97 -3.82 -0.02 -0.04 16 27 C 0.27 2.93 5.56 37.16 0.21 3.14 16 28 F -0.21 -2.19 14.38 2.25 0.03 -2.16 16 29 F -0.19 -2.76 17.19 2.25 0.04 -2.72 16 30 H 0.06 0.40 7.83 -51.93 -0.41 -0.01 16 31 H 0.08 0.63 7.36 -51.93 -0.38 0.24 16 32 H 0.07 0.45 5.96 -51.93 -0.31 0.14 16 33 H 0.08 1.24 7.80 -51.93 -0.41 0.83 16 34 H 0.09 1.85 7.38 -51.93 -0.38 1.47 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.08 1.21 7.92 -51.93 -0.41 0.80 16 37 H 0.05 1.08 6.94 -51.93 -0.36 0.72 16 38 H 0.04 0.88 6.63 -51.93 -0.34 0.54 16 39 H 0.26 7.87 8.31 -40.82 -0.34 7.53 16 40 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.11 0.89 7.44 -51.93 -0.39 0.50 16 42 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 43 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.11 1.05 5.33 -51.93 -0.28 0.77 16 46 H 0.12 1.55 5.76 -51.93 -0.30 1.25 16 47 H 0.06 0.54 8.05 -51.93 -0.42 0.12 16 48 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 375.88 15.07 5.66 5.66 Total: -1.00 -35.70 375.88 -7.22 -42.91 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -7.31 Total: -0.55 kcal Atomic # 6 Polarization: 10.81 SS G_CDS: 0.23 Total: 11.04 kcal Atomic # 7 Polarization: -57.54 SS G_CDS: -1.28 Total: -58.82 kcal Atomic # 8 Polarization: -13.52 SS G_CDS: -0.30 Total: -13.82 kcal Atomic # 9 Polarization: -4.95 SS G_CDS: 0.07 Total: -4.88 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -4.30 Total: 18.44 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -35.70 -7.22 -42.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085743461.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.491 kcal (2) G-P(sol) polarization free energy of solvation -35.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds