Wall clock time and date at job start Wed Apr 1 2020 06:04:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46505 * 120.00170 * 2 1 4 4 C 1.53002 * 109.46904 * 273.43320 * 3 2 1 5 5 H 1.09001 * 112.73698 * 317.50052 * 4 3 2 6 6 C 1.53496 * 113.47069 * 88.24792 * 4 3 2 7 7 C 1.53610 * 83.30348 * 140.82765 * 6 4 3 8 8 N 1.47067 * 88.00838 * 333.97788 * 7 6 4 9 9 C 1.36938 * 136.05689 * 207.03677 * 8 7 6 10 10 H 1.08004 * 119.99530 * 160.67676 * 9 8 7 11 11 C 1.38800 * 120.00443 * 340.67930 * 9 8 7 12 12 N 1.31613 * 120.00382 * 171.87647 * 11 9 8 13 13 Si 1.86802 * 119.99832 * 351.87383 * 11 9 8 14 14 H 1.48499 * 109.47232 * 86.95639 * 13 11 9 15 15 H 1.48500 * 109.47278 * 206.95300 * 13 11 9 16 16 H 1.48505 * 109.47292 * 326.95808 * 13 11 9 17 17 C 1.34781 * 120.00236 * 180.02562 * 2 1 3 18 18 O 1.21279 * 120.00305 * 176.09398 * 17 2 1 19 19 C 1.50707 * 119.99594 * 356.10121 * 17 2 1 20 20 H 1.08999 * 109.50853 * 38.28140 * 19 17 2 21 21 C 1.53097 * 109.50453 * 278.14524 * 19 17 2 22 22 O 1.43017 * 109.25817 * 183.21597 * 21 19 17 23 23 C 1.43017 * 113.73233 * 58.67694 * 22 21 19 24 24 C 1.53100 * 109.25878 * 301.32258 * 23 22 21 25 25 N 1.47012 * 109.50271 * 158.36610 * 19 17 2 26 26 C 1.46900 * 111.00352 * 302.32619 * 25 19 17 27 27 C 1.53004 * 109.47001 * 164.28029 * 26 25 19 28 28 F 1.39899 * 109.46819 * 64.12463 * 27 26 25 29 29 F 1.39892 * 109.47120 * 304.12109 * 27 26 25 30 30 H 1.09006 * 109.46883 * 269.99685 * 1 2 3 31 31 H 1.08996 * 109.46953 * 29.99809 * 1 2 3 32 32 H 1.09003 * 109.46721 * 149.99795 * 1 2 3 33 33 H 1.09006 * 109.46742 * 33.42817 * 3 2 1 34 34 H 1.08992 * 109.47160 * 153.42963 * 3 2 1 35 35 H 1.09002 * 114.20032 * 254.43173 * 6 4 3 36 36 H 1.09001 * 114.20504 * 27.25285 * 6 4 3 37 37 H 1.09003 * 113.50309 * 219.18018 * 7 6 4 38 38 H 1.09005 * 113.46926 * 88.76835 * 7 6 4 39 39 H 0.97006 * 120.00216 * 179.97438 * 12 11 9 40 40 H 1.08997 * 109.51157 * 303.16244 * 21 19 17 41 41 H 1.09004 * 109.50168 * 63.24535 * 21 19 17 42 42 H 1.08994 * 109.50836 * 61.26172 * 23 22 21 43 43 H 1.09006 * 109.50020 * 181.34986 * 23 22 21 44 44 H 1.08998 * 109.50748 * 296.92138 * 24 23 22 45 45 H 1.08996 * 109.50728 * 176.78406 * 24 23 22 46 46 H 1.09002 * 109.47089 * 44.28135 * 26 25 19 47 47 H 1.08999 * 109.46697 * 284.27956 * 26 25 19 48 48 H 1.09004 * 109.46840 * 184.11715 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.3777 1.7536 -1.4399 5 1 2.6522 0.9503 -2.1237 6 6 1.2122 2.6150 -1.9453 7 6 2.3353 3.4264 -2.6086 8 7 3.2388 2.9403 -1.5549 9 6 4.3799 3.3931 -0.9483 10 1 4.6771 2.9934 0.0100 11 6 5.1546 4.3659 -1.5649 12 7 6.1590 4.9162 -0.9164 13 14 4.7716 4.8939 -3.3153 14 1 3.7561 5.9771 -3.2946 15 1 6.0113 5.3901 -3.9651 16 1 4.2430 3.7344 -4.0778 17 6 2.1390 -1.1672 -0.0005 18 8 3.3496 -1.1684 -0.0721 19 6 1.3880 -2.4709 0.0876 20 1 0.4715 -2.4034 -0.4985 21 6 1.0406 -2.7628 1.5498 22 8 0.3948 -4.0359 1.6361 23 6 1.1847 -5.1172 1.1340 24 6 1.5336 -4.8492 -0.3325 25 7 2.2276 -3.5574 -0.4374 26 6 2.6313 -3.2878 -1.8239 27 6 3.7940 -4.2068 -2.2044 28 9 3.3641 -5.5379 -2.1781 29 9 4.8407 -4.0366 -1.2922 30 1 -0.3633 -0.0001 1.0277 31 1 -0.3633 0.8900 -0.5138 32 1 -0.3633 -0.8900 -0.5139 33 1 1.6364 2.0122 0.5662 34 1 3.1752 1.1238 0.4596 35 1 0.5525 2.1062 -2.6483 36 1 0.6783 3.1498 -1.1598 37 1 2.1706 4.5034 -2.5765 38 1 2.5984 3.0699 -3.6045 39 1 6.7006 5.5957 -1.3475 40 1 1.9535 -2.7765 2.1452 41 1 0.3720 -1.9886 1.9265 42 1 2.1018 -5.1995 1.7172 43 1 0.6201 -6.0465 1.2105 44 1 0.6191 -4.8203 -0.9248 45 1 2.1830 -5.6424 -0.7029 46 1 2.9452 -2.2480 -1.9153 47 1 1.7887 -3.4730 -2.4901 48 1 4.1414 -3.9571 -3.2070 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085743461.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:04:39 Heat of formation + Delta-G solvation = -113.446593 kcal Electronic energy + Delta-G solvation = -32990.915746 eV Core-core repulsion = 28332.920022 eV Total energy + Delta-G solvation = -4657.995723 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -49.92140 -47.90617 -41.80094 -40.40772 -39.47070 -37.02852 -36.40526 -34.44431 -32.84442 -31.43819 -30.51307 -29.90545 -27.59852 -27.19960 -25.93267 -25.17790 -24.10443 -23.43290 -21.98974 -21.13960 -20.23534 -18.91267 -18.65069 -18.49614 -18.07231 -17.83030 -17.58465 -17.25256 -17.21052 -16.75023 -16.32596 -16.07847 -15.72745 -15.48310 -15.31233 -15.07414 -14.89149 -14.87532 -14.74100 -14.26485 -14.23168 -14.03677 -13.81883 -13.61974 -13.41706 -13.35983 -13.32638 -13.01610 -12.79965 -12.70391 -12.64773 -12.44103 -12.13923 -12.00728 -11.88043 -11.75781 -11.52231 -11.17372 -11.03401 -10.92417 -10.58829 -9.66135 -9.52736 -9.07914 -8.15424 -5.49014 1.27626 1.34473 1.42063 1.48532 1.79607 2.40338 2.41659 2.79084 2.89868 3.06407 3.15596 3.29936 3.43107 3.54066 3.66315 3.68778 3.78519 3.91042 3.98792 4.15832 4.19128 4.21295 4.25739 4.35933 4.39290 4.41819 4.51354 4.58586 4.58967 4.64563 4.69137 4.78489 4.81786 4.87998 4.90916 4.96717 4.98274 5.03699 5.27368 5.45735 5.54292 5.61537 5.75975 5.97744 6.16658 6.39661 6.52739 7.15894 7.42556 8.29561 9.06261 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.013885 B = 0.003224 C = 0.002891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2016.075793 B = 8681.947574 C = 9682.661417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.603 5.603 3 C 0.129 3.871 4 C 0.132 3.868 5 H 0.035 0.965 6 C -0.115 4.115 7 C 0.084 3.916 8 N -0.647 5.647 9 C -0.207 4.207 10 H 0.056 0.944 11 C -0.051 4.051 12 N -0.974 5.974 13 Si 0.953 3.047 14 H -0.271 1.271 15 H -0.309 1.309 16 H -0.251 1.251 17 C 0.506 3.494 18 O -0.562 6.562 19 C 0.045 3.955 20 H 0.104 0.896 21 C 0.082 3.918 22 O -0.381 6.381 23 C 0.058 3.942 24 C 0.006 3.994 25 N -0.538 5.538 26 C 0.002 3.998 27 C 0.266 3.734 28 F -0.207 7.207 29 F -0.216 7.216 30 H 0.078 0.922 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.096 0.904 34 H 0.037 0.963 35 H 0.107 0.893 36 H 0.104 0.896 37 H 0.047 0.953 38 H 0.045 0.955 39 H 0.261 0.739 40 H 0.044 0.956 41 H 0.128 0.872 42 H 0.049 0.951 43 H 0.130 0.870 44 H 0.063 0.937 45 H 0.109 0.891 46 H 0.088 0.912 47 H 0.095 0.905 48 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.367 -20.977 -2.434 30.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.337 5.337 3 C 0.005 3.995 4 C 0.026 3.974 5 H 0.053 0.947 6 C -0.152 4.152 7 C -0.040 4.040 8 N -0.375 5.375 9 C -0.335 4.335 10 H 0.074 0.926 11 C -0.243 4.243 12 N -0.623 5.623 13 Si 0.781 3.219 14 H -0.197 1.197 15 H -0.237 1.237 16 H -0.175 1.175 17 C 0.293 3.707 18 O -0.439 6.439 19 C -0.067 4.067 20 H 0.121 0.879 21 C 0.004 3.996 22 O -0.299 6.299 23 C -0.018 4.018 24 C -0.121 4.121 25 N -0.265 5.265 26 C -0.127 4.127 27 C 0.213 3.787 28 F -0.188 7.188 29 F -0.197 7.197 30 H 0.096 0.904 31 H 0.112 0.888 32 H 0.109 0.891 33 H 0.114 0.886 34 H 0.056 0.944 35 H 0.125 0.875 36 H 0.122 0.878 37 H 0.065 0.935 38 H 0.063 0.937 39 H 0.069 0.931 40 H 0.062 0.938 41 H 0.146 0.854 42 H 0.068 0.932 43 H 0.148 0.852 44 H 0.081 0.919 45 H 0.127 0.873 46 H 0.107 0.893 47 H 0.113 0.887 48 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -20.182 -20.872 -1.972 29.100 hybrid contribution 0.933 0.730 -1.094 1.612 sum -19.249 -20.141 -3.065 28.028 Atomic orbital electron populations 1.22290 0.76288 1.05272 1.03924 1.47951 1.08791 1.04528 1.72412 1.21434 0.96285 0.84556 0.97229 1.22576 0.89898 0.89957 0.95016 0.94733 1.23490 0.94347 0.96756 1.00633 1.22901 0.89879 0.98661 0.92602 1.46348 1.27686 1.20604 1.42856 1.18460 0.98064 1.17434 0.99555 0.92610 1.25725 0.96100 1.00188 1.02323 1.69883 1.22290 1.30899 1.39178 0.85730 0.76210 0.78882 0.81099 1.19740 1.23702 1.17479 1.20788 0.87659 0.85838 0.76410 1.90796 1.16152 1.87361 1.49602 1.22339 0.95334 0.88567 1.00428 0.87880 1.22508 0.98536 0.87045 0.91529 1.88005 1.43017 1.15453 1.83395 1.22886 0.96124 0.90697 0.92106 1.23326 0.98804 0.91153 0.98819 1.61782 1.42354 1.02483 1.19850 1.23306 0.98044 1.00995 0.90327 1.22259 0.84621 0.77848 0.94010 1.92842 1.90115 1.38679 1.97166 1.92986 1.60168 1.95221 1.71365 0.90367 0.88803 0.89067 0.88616 0.94444 0.87453 0.87805 0.93503 0.93688 0.93053 0.93786 0.85431 0.93242 0.85239 0.91899 0.87330 0.89325 0.88743 0.83771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.76 9.82 127.77 1.26 2.02 16 2 N -0.60 -14.57 2.87 -846.72 -2.43 -17.00 16 3 C 0.13 4.29 5.37 86.38 0.46 4.76 16 4 C 0.13 4.78 4.31 41.78 0.18 4.96 16 5 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 6 C -0.11 -3.05 7.32 30.97 0.23 -2.83 16 7 C 0.08 3.21 5.58 83.21 0.46 3.67 16 8 N -0.65 -30.84 3.39 -713.32 -2.42 -33.26 16 9 C -0.21 -12.36 11.02 84.03 0.93 -11.43 16 10 H 0.06 3.70 8.06 -2.91 -0.02 3.68 16 11 C -0.05 -3.11 5.50 84.86 0.47 -2.64 16 12 N -0.97 -64.32 13.97 21.65 0.30 -64.02 16 13 Si 0.95 47.73 25.31 68.60 1.74 49.46 16 14 H -0.27 -12.78 7.06 99.48 0.70 -12.08 16 15 H -0.31 -15.78 7.11 99.48 0.71 -15.08 16 16 H -0.25 -11.66 5.56 99.48 0.55 -11.11 16 17 C 0.51 14.33 5.82 87.66 0.51 14.84 16 18 O -0.56 -22.78 14.69 -3.03 -0.04 -22.82 16 19 C 0.04 0.91 1.70 44.18 0.08 0.98 16 20 H 0.10 1.46 6.15 -2.39 -0.01 1.45 16 21 C 0.08 1.54 6.24 72.01 0.45 1.99 16 22 O -0.38 -6.90 10.83 -148.98 -1.61 -8.51 16 23 C 0.06 0.92 7.01 72.02 0.50 1.42 16 24 C 0.01 0.09 5.32 86.31 0.46 0.55 16 25 N -0.54 -12.01 4.08 -874.36 -3.57 -15.58 16 26 C 0.00 0.04 4.97 86.30 0.43 0.47 16 27 C 0.27 5.53 5.56 71.98 0.40 5.93 16 28 F -0.21 -4.04 14.38 44.97 0.65 -3.39 16 29 F -0.22 -6.65 17.19 44.97 0.77 -5.87 16 30 H 0.08 0.69 7.83 -2.38 -0.02 0.67 16 31 H 0.09 0.92 7.36 -2.39 -0.02 0.90 16 32 H 0.09 0.71 5.96 -2.39 -0.01 0.69 16 33 H 0.10 2.83 7.80 -2.38 -0.02 2.81 16 34 H 0.04 1.64 7.38 -2.39 -0.02 1.63 16 35 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.10 2.43 7.92 -2.39 -0.02 2.41 16 37 H 0.05 1.84 6.94 -2.39 -0.02 1.82 16 38 H 0.05 1.72 6.63 -2.38 -0.02 1.70 16 39 H 0.26 16.34 8.31 -92.70 -0.77 15.57 16 40 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.13 1.77 7.44 -2.38 -0.02 1.75 16 42 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.13 1.29 8.14 -2.38 -0.02 1.27 16 44 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 45 H 0.11 1.85 5.33 -2.39 -0.01 1.84 16 46 H 0.09 2.37 5.76 -2.39 -0.01 2.36 16 47 H 0.09 1.31 8.05 -2.39 -0.02 1.29 16 48 H 0.15 2.02 8.14 -2.39 -0.02 2.00 16 Total: -1.00 -85.69 375.88 1.01 -84.69 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: 0.82 Total: 11.62 kcal Atomic # 6 Polarization: 17.88 SS G_CDS: 6.81 Total: 24.69 kcal Atomic # 7 Polarization: -121.74 SS G_CDS: -8.12 Total: -129.86 kcal Atomic # 8 Polarization: -29.68 SS G_CDS: -1.66 Total: -31.34 kcal Atomic # 9 Polarization: -10.69 SS G_CDS: 1.42 Total: -9.27 kcal Atomic # 14 Polarization: 47.73 SS G_CDS: 1.74 Total: 49.46 kcal Total: -85.69 1.01 -84.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085743461.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.757 kcal (2) G-P(sol) polarization free energy of solvation -85.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds