Wall clock time and date at job start Wed Apr 1 2020 05:17:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34945 * 126.04047 * 2 1 4 4 C 1.35317 * 107.74553 * 180.14658 * 3 2 1 5 5 C 1.50703 * 126.03844 * 179.87075 * 4 3 2 6 6 H 1.09001 * 110.64188 * 356.57880 * 5 4 3 7 7 C 1.54316 * 110.72121 * 233.23893 * 5 4 3 8 8 N 1.47024 * 107.26813 * 219.44626 * 7 5 4 9 9 C 1.34785 * 125.64591 * 178.90812 * 8 7 5 10 10 O 1.21281 * 120.00019 * 359.97438 * 9 8 7 11 11 C 1.50703 * 119.99898 * 179.97438 * 9 8 7 12 12 H 1.08997 * 110.21486 * 318.07304 * 11 9 8 13 13 C 1.54472 * 110.24468 * 80.00241 * 11 9 8 14 14 C 1.54625 * 101.76882 * 93.58119 * 13 11 9 15 15 C 1.51285 * 104.19218 * 24.79582 * 14 13 11 16 16 O 1.21281 * 124.94251 * 163.70599 * 15 14 13 17 17 N 1.34420 * 110.11517 * 343.74845 * 15 14 13 18 18 C 1.47459 * 108.72599 * 358.97550 * 8 7 5 19 19 C 1.54911 * 104.81307 * 24.06870 * 18 8 7 20 20 H 1.09004 * 110.99923 * 81.13240 * 19 18 8 21 21 N 1.46490 * 111.00591 * 204.95079 * 19 18 8 22 22 C 1.36935 * 120.00121 * 270.41461 * 21 19 18 23 23 H 1.07997 * 120.00139 * 0.02562 * 22 21 19 24 24 C 1.38816 * 120.00401 * 180.02562 * 22 21 19 25 25 N 1.31624 * 119.99569 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00172 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47055 * 180.02562 * 26 24 22 28 28 H 1.48505 * 109.46653 * 299.99639 * 26 24 22 29 29 H 1.48495 * 109.47483 * 60.00002 * 26 24 22 30 30 C 1.39872 * 107.91982 * 359.61026 * 4 3 2 31 31 N 1.30834 * 108.20232 * 0.24250 * 30 4 3 32 32 H 1.08995 * 109.47090 * 270.26293 * 1 2 3 33 33 H 1.09005 * 109.46774 * 30.26251 * 1 2 3 34 34 H 1.08993 * 109.47335 * 150.25536 * 1 2 3 35 35 H 1.08007 * 126.12651 * 359.97438 * 3 2 1 36 36 H 1.09003 * 109.88554 * 338.86260 * 7 5 4 37 37 H 1.08997 * 109.88462 * 99.87773 * 7 5 4 38 38 H 1.09002 * 110.97100 * 211.70426 * 13 11 9 39 39 H 1.09001 * 110.96851 * 335.42564 * 13 11 9 40 40 H 1.09004 * 110.48831 * 143.47286 * 14 13 11 41 41 H 1.09002 * 110.49119 * 265.98884 * 14 13 11 42 42 H 0.97004 * 124.34358 * 179.58914 * 17 15 14 43 43 H 1.09008 * 110.35088 * 265.25502 * 18 8 7 44 44 H 1.09002 * 110.40628 * 142.91812 * 18 8 7 45 45 H 0.97000 * 120.00577 * 90.42061 * 21 19 18 46 46 H 0.97001 * 119.99885 * 359.97438 * 25 24 22 47 47 H 1.07994 * 125.89576 * 180.21568 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2590 1.0912 0.0000 4 6 3.5437 0.6664 -0.0033 5 6 4.7681 1.5451 -0.0073 6 1 4.4864 2.5963 -0.0680 7 6 5.7121 1.1609 -1.1659 8 7 7.0881 1.2500 -0.6557 9 6 8.2053 0.9715 -1.3564 10 8 8.1226 0.6118 -2.5117 11 6 9.5571 1.1071 -0.7043 12 1 9.5944 2.0131 -0.0995 13 6 9.8558 -0.1314 0.1693 14 6 10.6410 -1.0294 -0.8146 15 6 11.2341 -0.0577 -1.8110 16 8 12.1393 -0.3137 -2.5765 17 7 10.6125 1.1309 -1.7238 18 6 7.0439 1.6929 0.7501 19 6 5.6369 1.2815 1.2510 20 1 5.6136 0.2275 1.5280 21 7 5.2103 2.1253 2.3699 22 6 5.5126 1.7624 3.6552 23 1 6.0658 0.8543 3.8440 24 6 5.1079 2.5616 4.7156 25 7 4.4332 3.6681 4.4856 26 14 5.5209 2.0668 6.4689 27 1 4.9798 3.0803 7.4098 28 1 4.9152 0.7437 6.7654 29 1 6.9952 1.9827 6.6254 30 6 3.5346 -0.7323 0.0037 31 7 2.2891 -1.1328 0.0056 32 1 -0.3633 0.0047 1.0276 33 1 -0.3633 0.8877 -0.5179 34 1 -0.3633 -0.8922 -0.5098 35 1 1.9282 2.1193 -0.0004 36 1 5.5030 0.1422 -1.4923 37 1 5.5776 1.8517 -1.9983 38 1 10.4706 0.1364 1.0286 39 1 8.9328 -0.6155 0.4884 40 1 11.4306 -1.5690 -0.2916 41 1 9.9689 -1.7276 -1.3134 42 1 10.8333 1.9050 -2.2651 43 1 7.1669 2.7743 0.8109 44 1 7.8160 1.1892 1.3318 45 1 4.7137 2.9411 2.2005 46 1 4.2191 3.9252 3.5751 47 1 4.4053 -1.3711 0.0065 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086971282.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:17:57 Heat of formation + Delta-G solvation = 36.344729 kcal Electronic energy + Delta-G solvation = -31038.860011 eV Core-core repulsion = 26838.048914 eV Total energy + Delta-G solvation = -4200.811098 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.22804 -40.90035 -39.30961 -37.61618 -36.14431 -34.47045 -33.49463 -32.08261 -31.46923 -30.71502 -29.35178 -27.95567 -27.43058 -26.15210 -24.15041 -23.25592 -22.22319 -21.39150 -20.74328 -20.66759 -19.60727 -19.39989 -17.68180 -17.58091 -17.31904 -16.60335 -16.18943 -15.65821 -15.33199 -15.28662 -14.87848 -14.47981 -14.34397 -14.14090 -13.81058 -13.73803 -13.54966 -13.44432 -13.17274 -12.94089 -12.83812 -12.82150 -12.76245 -12.34633 -12.32492 -11.72895 -11.59046 -11.51311 -11.28802 -10.89050 -10.83061 -10.60879 -10.32434 -10.27829 -10.08965 -10.00330 -9.34887 -9.27368 -9.21920 -9.09071 -8.55594 -8.14918 -7.22279 -6.24365 -3.26977 2.02793 2.40170 2.51866 2.62303 2.84167 2.96419 3.32692 3.43632 3.46087 3.63404 4.13580 4.22471 4.33305 4.50220 4.57431 4.63937 4.89338 4.90806 4.99893 5.01722 5.07865 5.13127 5.19194 5.30575 5.33483 5.43061 5.46225 5.52681 5.55164 5.59060 5.66663 5.67620 5.78896 5.86530 5.95320 6.10270 6.18061 6.30313 6.32672 6.55529 6.68345 6.78585 6.82868 7.11237 7.55201 7.66093 7.82057 8.05725 8.15444 8.60607 9.03666 9.90366 10.03234 11.23177 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.007743 B = 0.003779 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3615.430573 B = 7407.512377 C =10168.398964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.380 5.380 3 C 0.063 3.937 4 C -0.208 4.208 5 C -0.032 4.032 6 H 0.087 0.913 7 C 0.122 3.878 8 N -0.608 5.608 9 C 0.512 3.488 10 O -0.539 6.539 11 C 0.117 3.883 12 H 0.115 0.885 13 C -0.120 4.120 14 C -0.157 4.157 15 C 0.529 3.471 16 O -0.536 6.536 17 N -0.708 5.708 18 C 0.066 3.934 19 C 0.190 3.810 20 H 0.070 0.930 21 N -0.717 5.717 22 C -0.336 4.336 23 H 0.066 0.934 24 C -0.037 4.037 25 N -0.940 5.940 26 Si 1.076 2.924 27 H -0.285 1.285 28 H -0.295 1.295 29 H -0.294 1.294 30 C 0.059 3.941 31 N -0.301 5.301 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.171 0.829 36 H 0.070 0.930 37 H 0.064 0.936 38 H 0.099 0.901 39 H 0.098 0.902 40 H 0.106 0.894 41 H 0.107 0.893 42 H 0.413 0.587 43 H 0.071 0.929 44 H 0.075 0.925 45 H 0.369 0.631 46 H 0.255 0.745 47 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.295 -4.361 -8.654 9.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.162 5.162 3 C -0.083 4.083 4 C -0.220 4.220 5 C -0.053 4.053 6 H 0.105 0.895 7 C -0.001 4.001 8 N -0.342 5.342 9 C 0.298 3.702 10 O -0.416 6.416 11 C 0.007 3.993 12 H 0.133 0.867 13 C -0.159 4.159 14 C -0.197 4.197 15 C 0.316 3.684 16 O -0.413 6.413 17 N -0.363 5.363 18 C -0.060 4.060 19 C 0.077 3.923 20 H 0.088 0.912 21 N -0.358 5.358 22 C -0.467 4.467 23 H 0.084 0.916 24 C -0.236 4.236 25 N -0.584 5.584 26 Si 0.907 3.093 27 H -0.211 1.211 28 H -0.222 1.222 29 H -0.221 1.221 30 C -0.127 4.127 31 N -0.123 5.123 32 H 0.091 0.909 33 H 0.103 0.897 34 H 0.104 0.896 35 H 0.188 0.812 36 H 0.088 0.912 37 H 0.082 0.918 38 H 0.117 0.883 39 H 0.117 0.883 40 H 0.125 0.875 41 H 0.125 0.875 42 H 0.252 0.748 43 H 0.090 0.910 44 H 0.093 0.907 45 H 0.203 0.797 46 H 0.066 0.934 47 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -0.250 -5.565 -7.945 9.703 hybrid contribution 0.392 1.058 -1.744 2.077 sum 0.142 -4.506 -9.690 10.687 Atomic orbital electron populations 1.21791 0.74579 1.04023 1.03319 1.48333 1.06399 1.03888 1.57593 1.22254 0.90821 0.93230 1.01968 1.19634 0.93505 0.93476 1.15353 1.20754 0.91165 0.98232 0.95173 0.89512 1.21929 0.80120 1.01785 0.96279 1.48530 1.05553 1.65910 1.14248 1.20590 0.85289 0.77898 0.86394 1.90718 1.86811 1.47079 1.17017 1.21535 0.85658 1.02504 0.89628 0.86736 1.22608 1.02452 0.93388 0.97408 1.22362 1.01786 0.98442 0.97089 1.20813 0.81110 0.83285 0.83200 1.90745 1.29942 1.79431 1.41188 1.45880 1.34795 1.14800 1.40797 1.23646 1.03073 1.00154 0.79128 1.21263 0.88707 0.95830 0.86457 0.91199 1.42237 1.66148 1.25833 1.01576 1.20005 1.34321 1.08292 0.84067 0.91551 1.25725 0.98793 0.95629 1.03423 1.70909 1.41256 1.24145 1.22099 0.83295 0.75602 0.75158 0.75288 1.21055 1.22238 1.22083 1.23628 0.94969 0.94587 0.99550 1.77292 1.01659 1.08346 1.24975 0.90855 0.89710 0.89606 0.81203 0.91207 0.91757 0.88282 0.88337 0.87536 0.87494 0.74805 0.91040 0.90668 0.79685 0.93351 0.80543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.93 11.47 59.85 0.69 1.62 16 2 N -0.38 -5.13 4.01 -68.16 -0.27 -5.40 16 3 C 0.06 0.85 11.40 -17.22 -0.20 0.65 16 4 C -0.21 -2.98 4.95 -105.05 -0.52 -3.50 16 5 C -0.03 -0.44 3.00 -89.94 -0.27 -0.71 16 6 H 0.09 1.19 7.99 -51.93 -0.41 0.77 16 7 C 0.12 1.60 6.42 -3.07 -0.02 1.58 16 8 N -0.61 -7.91 3.33 -170.49 -0.57 -8.47 16 9 C 0.51 6.87 7.03 -10.98 -0.08 6.80 16 10 O -0.54 -9.17 16.88 5.56 0.09 -9.07 16 11 C 0.12 1.21 3.14 -68.17 -0.21 1.00 16 12 H 0.11 1.00 7.78 -51.93 -0.40 0.59 16 13 C -0.12 -1.04 6.03 -25.10 -0.15 -1.20 16 14 C -0.16 -1.54 6.85 -26.74 -0.18 -1.72 16 15 C 0.53 6.99 8.43 -10.86 -0.09 6.90 16 16 O -0.54 -9.13 18.03 5.56 0.10 -9.03 16 17 N -0.71 -8.08 5.45 -53.89 -0.29 -8.37 16 18 C 0.07 0.90 6.15 -2.51 -0.02 0.89 16 19 C 0.19 3.08 3.12 -65.78 -0.21 2.88 16 20 H 0.07 1.21 7.66 -51.93 -0.40 0.81 16 21 N -0.72 -15.07 5.26 -51.35 -0.27 -15.34 16 22 C -0.34 -8.27 9.97 -15.06 -0.15 -8.42 16 23 H 0.07 1.61 7.83 -52.49 -0.41 1.20 16 24 C -0.04 -0.98 5.50 -17.43 -0.10 -1.08 16 25 N -0.94 -26.54 13.70 55.49 0.76 -25.78 16 26 Si 1.08 23.89 29.92 -169.99 -5.09 18.80 16 27 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 28 H -0.30 -6.36 7.11 56.52 0.40 -5.96 16 29 H -0.29 -6.17 7.11 56.52 0.40 -5.77 16 30 C 0.06 0.87 10.73 -17.37 -0.19 0.68 16 31 N -0.30 -4.71 12.58 30.62 0.39 -4.32 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.17 1.84 8.06 -52.48 -0.42 1.42 16 36 H 0.07 0.94 7.22 -51.93 -0.37 0.56 16 37 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.10 0.85 7.61 -51.93 -0.39 0.46 16 40 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.11 1.07 8.14 -51.93 -0.42 0.64 16 42 H 0.41 4.27 8.96 -40.82 -0.37 3.91 16 43 H 0.07 1.04 8.14 -51.92 -0.42 0.61 16 44 H 0.07 0.95 6.81 -51.93 -0.35 0.60 16 45 H 0.37 8.11 6.56 -40.82 -0.27 7.84 16 46 H 0.26 7.01 6.77 -40.82 -0.28 6.74 16 47 H 0.18 2.26 8.06 -52.49 -0.42 1.84 16 LS Contribution 391.12 15.07 5.89 5.89 Total: -1.00 -35.30 391.12 -7.63 -42.93 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: -6.68 Total: 11.80 kcal Atomic # 6 Polarization: 8.05 SS G_CDS: -1.69 Total: 6.36 kcal Atomic # 7 Polarization: -67.43 SS G_CDS: -0.26 Total: -67.69 kcal Atomic # 8 Polarization: -18.30 SS G_CDS: 0.19 Total: -18.10 kcal Atomic # 14 Polarization: 23.89 SS G_CDS: -5.09 Total: 18.80 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -35.30 -7.63 -42.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086971282.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.278 kcal (2) G-P(sol) polarization free energy of solvation -35.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds