Wall clock time and date at job start Wed Apr 1 2020 05:17:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34945 * 126.04047 * 2 1 4 4 C 1.35317 * 107.74553 * 180.14658 * 3 2 1 5 5 C 1.50703 * 126.03844 * 179.87075 * 4 3 2 6 6 H 1.09001 * 110.64188 * 356.57880 * 5 4 3 7 7 C 1.54316 * 110.72121 * 233.23893 * 5 4 3 8 8 N 1.47024 * 107.26813 * 219.44626 * 7 5 4 9 9 C 1.34785 * 125.64591 * 178.90812 * 8 7 5 10 10 O 1.21281 * 120.00019 * 359.97438 * 9 8 7 11 11 C 1.50703 * 119.99898 * 179.97438 * 9 8 7 12 12 H 1.08997 * 110.21486 * 318.07304 * 11 9 8 13 13 C 1.54472 * 110.24468 * 80.00241 * 11 9 8 14 14 C 1.54625 * 101.76882 * 93.58119 * 13 11 9 15 15 C 1.51285 * 104.19218 * 24.79582 * 14 13 11 16 16 O 1.21281 * 124.94251 * 163.70599 * 15 14 13 17 17 N 1.34420 * 110.11517 * 343.74845 * 15 14 13 18 18 C 1.47459 * 108.72599 * 358.97550 * 8 7 5 19 19 C 1.54911 * 104.81307 * 24.06870 * 18 8 7 20 20 H 1.09004 * 110.99923 * 81.13240 * 19 18 8 21 21 N 1.46490 * 111.00591 * 204.95079 * 19 18 8 22 22 C 1.36935 * 120.00121 * 270.41461 * 21 19 18 23 23 H 1.07997 * 120.00139 * 0.02562 * 22 21 19 24 24 C 1.38816 * 120.00401 * 180.02562 * 22 21 19 25 25 N 1.31624 * 119.99569 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00172 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47055 * 180.02562 * 26 24 22 28 28 H 1.48505 * 109.46653 * 299.99639 * 26 24 22 29 29 H 1.48495 * 109.47483 * 60.00002 * 26 24 22 30 30 C 1.39872 * 107.91982 * 359.61026 * 4 3 2 31 31 N 1.30834 * 108.20232 * 0.24250 * 30 4 3 32 32 H 1.08995 * 109.47090 * 270.26293 * 1 2 3 33 33 H 1.09005 * 109.46774 * 30.26251 * 1 2 3 34 34 H 1.08993 * 109.47335 * 150.25536 * 1 2 3 35 35 H 1.08007 * 126.12651 * 359.97438 * 3 2 1 36 36 H 1.09003 * 109.88554 * 338.86260 * 7 5 4 37 37 H 1.08997 * 109.88462 * 99.87773 * 7 5 4 38 38 H 1.09002 * 110.97100 * 211.70426 * 13 11 9 39 39 H 1.09001 * 110.96851 * 335.42564 * 13 11 9 40 40 H 1.09004 * 110.48831 * 143.47286 * 14 13 11 41 41 H 1.09002 * 110.49119 * 265.98884 * 14 13 11 42 42 H 0.97004 * 124.34358 * 179.58914 * 17 15 14 43 43 H 1.09008 * 110.35088 * 265.25502 * 18 8 7 44 44 H 1.09002 * 110.40628 * 142.91812 * 18 8 7 45 45 H 0.97000 * 120.00577 * 90.42061 * 21 19 18 46 46 H 0.97001 * 119.99885 * 359.97438 * 25 24 22 47 47 H 1.07994 * 125.89576 * 180.21568 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2590 1.0912 0.0000 4 6 3.5437 0.6664 -0.0033 5 6 4.7681 1.5451 -0.0073 6 1 4.4864 2.5963 -0.0680 7 6 5.7121 1.1609 -1.1659 8 7 7.0881 1.2500 -0.6557 9 6 8.2053 0.9715 -1.3564 10 8 8.1226 0.6118 -2.5117 11 6 9.5571 1.1071 -0.7043 12 1 9.5944 2.0131 -0.0995 13 6 9.8558 -0.1314 0.1693 14 6 10.6410 -1.0294 -0.8146 15 6 11.2341 -0.0577 -1.8110 16 8 12.1393 -0.3137 -2.5765 17 7 10.6125 1.1309 -1.7238 18 6 7.0439 1.6929 0.7501 19 6 5.6369 1.2815 1.2510 20 1 5.6136 0.2275 1.5280 21 7 5.2103 2.1253 2.3699 22 6 5.5126 1.7624 3.6552 23 1 6.0658 0.8543 3.8440 24 6 5.1079 2.5616 4.7156 25 7 4.4332 3.6681 4.4856 26 14 5.5209 2.0668 6.4689 27 1 4.9798 3.0803 7.4098 28 1 4.9152 0.7437 6.7654 29 1 6.9952 1.9827 6.6254 30 6 3.5346 -0.7323 0.0037 31 7 2.2891 -1.1328 0.0056 32 1 -0.3633 0.0047 1.0276 33 1 -0.3633 0.8877 -0.5179 34 1 -0.3633 -0.8922 -0.5098 35 1 1.9282 2.1193 -0.0004 36 1 5.5030 0.1422 -1.4923 37 1 5.5776 1.8517 -1.9983 38 1 10.4706 0.1364 1.0286 39 1 8.9328 -0.6155 0.4884 40 1 11.4306 -1.5690 -0.2916 41 1 9.9689 -1.7276 -1.3134 42 1 10.8333 1.9050 -2.2651 43 1 7.1669 2.7743 0.8109 44 1 7.8160 1.1892 1.3318 45 1 4.7137 2.9411 2.2005 46 1 4.2191 3.9252 3.5751 47 1 4.4053 -1.3711 0.0065 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086971282.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:17:56 Heat of formation + Delta-G solvation = 10.165560 kcal Electronic energy + Delta-G solvation = -31039.995225 eV Core-core repulsion = 26838.048914 eV Total energy + Delta-G solvation = -4201.946312 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.28938 -41.89525 -40.41748 -38.83329 -37.20887 -36.11202 -34.52772 -33.31842 -32.35751 -32.15397 -30.39473 -28.98797 -28.73898 -27.08748 -25.71118 -24.52155 -23.16872 -22.58950 -21.81082 -21.65443 -20.71573 -20.47016 -19.32542 -18.66653 -18.36551 -17.72281 -17.25087 -16.87544 -16.37172 -16.28466 -16.19500 -15.66724 -15.56182 -15.36558 -15.24448 -14.80797 -14.67647 -14.45517 -14.31585 -14.02354 -13.92016 -13.72303 -13.62701 -13.41329 -13.30509 -12.85144 -12.72561 -12.53645 -12.49842 -12.33945 -12.24522 -11.88691 -11.85350 -11.43256 -11.42551 -11.17320 -11.05130 -10.89740 -10.33521 -10.17684 -9.70433 -9.31732 -8.94451 -8.24270 -5.20303 0.97046 1.37359 1.47075 1.67289 1.70940 1.74545 1.79038 1.89512 1.90760 2.37834 2.78852 3.26413 3.33186 3.45184 3.49145 3.57014 3.83877 3.84586 3.91223 4.00900 4.07289 4.17355 4.21531 4.32758 4.40526 4.41884 4.42775 4.48585 4.55105 4.67126 4.75951 4.77495 4.81920 4.88873 4.97897 5.00079 5.03510 5.18516 5.19455 5.43000 5.64868 5.70615 5.75266 5.89226 6.15504 6.45954 6.64250 6.74180 7.00970 7.14047 7.20107 8.09988 8.20554 9.27410 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.007743 B = 0.003779 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3615.430573 B = 7407.512377 C =10168.398964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.381 5.381 3 C 0.060 3.940 4 C -0.227 4.227 5 C -0.016 4.016 6 H 0.089 0.911 7 C 0.126 3.874 8 N -0.602 5.602 9 C 0.513 3.487 10 O -0.577 6.577 11 C 0.118 3.882 12 H 0.141 0.859 13 C -0.113 4.113 14 C -0.152 4.152 15 C 0.519 3.481 16 O -0.583 6.583 17 N -0.704 5.704 18 C 0.080 3.920 19 C 0.186 3.814 20 H 0.061 0.939 21 N -0.726 5.726 22 C -0.319 4.319 23 H 0.071 0.929 24 C -0.096 4.096 25 N -0.979 5.979 26 Si 1.115 2.885 27 H -0.302 1.302 28 H -0.287 1.287 29 H -0.273 1.273 30 C 0.049 3.951 31 N -0.332 5.332 32 H 0.076 0.924 33 H 0.114 0.886 34 H 0.094 0.906 35 H 0.195 0.805 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.127 0.873 39 H 0.103 0.897 40 H 0.128 0.872 41 H 0.104 0.896 42 H 0.415 0.585 43 H 0.069 0.931 44 H 0.093 0.907 45 H 0.363 0.637 46 H 0.247 0.753 47 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.602 -4.669 -8.083 9.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.164 5.164 3 C -0.087 4.087 4 C -0.238 4.238 5 C -0.037 4.037 6 H 0.107 0.893 7 C 0.003 3.997 8 N -0.335 5.335 9 C 0.301 3.699 10 O -0.457 6.457 11 C 0.009 3.991 12 H 0.158 0.842 13 C -0.151 4.151 14 C -0.192 4.192 15 C 0.307 3.693 16 O -0.464 6.464 17 N -0.357 5.357 18 C -0.045 4.045 19 C 0.075 3.925 20 H 0.079 0.921 21 N -0.367 5.367 22 C -0.450 4.450 23 H 0.089 0.911 24 C -0.288 4.288 25 N -0.627 5.627 26 Si 0.942 3.058 27 H -0.228 1.228 28 H -0.214 1.214 29 H -0.199 1.199 30 C -0.137 4.137 31 N -0.154 5.154 32 H 0.095 0.905 33 H 0.133 0.867 34 H 0.112 0.888 35 H 0.211 0.789 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.145 0.855 39 H 0.121 0.879 40 H 0.146 0.854 41 H 0.122 0.878 42 H 0.255 0.745 43 H 0.088 0.912 44 H 0.111 0.889 45 H 0.196 0.804 46 H 0.058 0.942 47 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 0.051 -5.901 -7.395 9.461 hybrid contribution 0.201 1.118 -2.029 2.326 sum 0.252 -4.783 -9.424 10.572 Atomic orbital electron populations 1.22148 0.72247 1.06001 1.04154 1.48711 1.07812 1.03297 1.56556 1.22718 0.90798 0.94328 1.00849 1.19767 0.94092 0.93443 1.16532 1.20579 0.90896 0.98304 0.93953 0.89257 1.21874 0.80117 1.01697 0.96034 1.48479 1.05581 1.65562 1.13888 1.21132 0.86166 0.76727 0.85872 1.90712 1.87366 1.48834 1.18796 1.21729 0.83359 1.04669 0.89381 0.84178 1.22714 1.02940 0.91969 0.97499 1.22396 1.02307 0.97934 0.96560 1.21433 0.80520 0.84175 0.83139 1.90713 1.32122 1.80326 1.43229 1.45964 1.34395 1.14567 1.40767 1.23333 1.01589 1.00182 0.79412 1.21368 0.90569 0.94511 0.86075 0.92091 1.42307 1.66473 1.26168 1.01734 1.20299 1.31942 1.07398 0.85409 0.91119 1.26771 0.99584 0.95818 1.06631 1.70992 1.44098 1.25950 1.21654 0.82761 0.76532 0.74613 0.71872 1.22823 1.21356 1.19898 1.23861 0.95220 0.95077 0.99504 1.77223 1.02293 1.09819 1.26112 0.90531 0.86721 0.88756 0.78853 0.91473 0.91509 0.85488 0.87859 0.85433 0.87794 0.74530 0.91222 0.88869 0.80411 0.94216 0.79625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.52 11.47 127.77 1.47 2.98 16 2 N -0.38 -9.84 4.01 -369.57 -1.48 -11.32 16 3 C 0.06 1.53 11.40 83.54 0.95 2.48 16 4 C -0.23 -6.28 4.95 -20.14 -0.10 -6.38 16 5 C -0.02 -0.43 3.00 -10.35 -0.03 -0.46 16 6 H 0.09 2.33 7.99 -2.39 -0.02 2.31 16 7 C 0.13 3.14 6.42 86.73 0.56 3.70 16 8 N -0.60 -14.41 3.33 -811.68 -2.70 -17.11 16 9 C 0.51 12.79 7.03 87.66 0.62 13.41 16 10 O -0.58 -19.09 16.88 -3.03 -0.05 -19.14 16 11 C 0.12 2.13 3.14 44.70 0.14 2.27 16 12 H 0.14 1.89 7.78 -2.39 -0.02 1.87 16 13 C -0.11 -1.57 6.03 31.65 0.19 -1.38 16 14 C -0.15 -2.65 6.85 30.59 0.21 -2.44 16 15 C 0.52 13.18 8.43 87.90 0.74 13.92 16 16 O -0.58 -19.93 18.03 -3.03 -0.05 -19.98 16 17 N -0.70 -15.00 5.45 -442.99 -2.41 -17.41 16 18 C 0.08 2.00 6.15 86.85 0.53 2.53 16 19 C 0.19 5.72 3.12 46.39 0.14 5.86 16 20 H 0.06 2.02 7.66 -2.38 -0.02 2.00 16 21 N -0.73 -29.73 5.26 -316.38 -1.66 -31.39 16 22 C -0.32 -15.26 9.97 84.03 0.84 -14.42 16 23 H 0.07 3.27 7.83 -2.91 -0.02 3.25 16 24 C -0.10 -4.97 5.50 84.86 0.47 -4.50 16 25 N -0.98 -55.50 13.70 21.65 0.30 -55.20 16 26 Si 1.12 47.41 29.92 68.60 2.05 49.46 16 27 H -0.30 -13.55 7.11 99.48 0.71 -12.84 16 28 H -0.29 -11.63 7.11 99.48 0.71 -10.92 16 29 H -0.27 -10.56 7.11 99.48 0.71 -9.85 16 30 C 0.05 1.41 10.73 85.24 0.91 2.32 16 31 N -0.33 -10.19 12.58 -57.03 -0.72 -10.91 16 32 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.11 1.14 8.14 -2.38 -0.02 1.12 16 34 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.19 3.83 8.06 -2.91 -0.02 3.81 16 36 H 0.07 1.74 7.22 -2.39 -0.02 1.72 16 37 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.13 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.10 1.40 7.61 -2.39 -0.02 1.39 16 40 H 0.13 1.69 8.14 -2.38 -0.02 1.67 16 41 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 42 H 0.42 8.18 8.96 -92.71 -0.83 7.35 16 43 H 0.07 1.83 8.14 -2.38 -0.02 1.81 16 44 H 0.09 2.02 6.81 -2.39 -0.02 2.00 16 45 H 0.36 15.81 6.56 -92.71 -0.61 15.20 16 46 H 0.25 13.74 6.77 -92.71 -0.63 13.12 16 47 H 0.19 4.69 8.06 -2.91 -0.02 4.67 16 Total: -1.00 -76.92 391.12 0.63 -76.30 By element: Atomic # 1 Polarization: 37.11 SS G_CDS: -0.28 Total: 36.83 kcal Atomic # 6 Polarization: 12.25 SS G_CDS: 7.64 Total: 19.89 kcal Atomic # 7 Polarization: -134.67 SS G_CDS: -8.68 Total: -143.35 kcal Atomic # 8 Polarization: -39.02 SS G_CDS: -0.11 Total: -39.12 kcal Atomic # 14 Polarization: 47.41 SS G_CDS: 2.05 Total: 49.46 kcal Total: -76.92 0.63 -76.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086971282.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.463 kcal (2) G-P(sol) polarization free energy of solvation -76.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.298 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds