Wall clock time and date at job start Wed Apr 1 2020 05:17:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34945 * 126.03099 * 2 1 4 4 C 1.35317 * 107.74301 * 179.97438 * 3 2 1 5 5 C 1.50697 * 126.04300 * 179.97438 * 4 3 2 6 6 H 1.09002 * 110.38754 * 0.77744 * 5 4 3 7 7 C 1.54388 * 110.34527 * 238.54957 * 5 4 3 8 8 N 1.48150 * 104.71876 * 217.20477 * 7 5 4 9 9 C 1.34781 * 127.83397 * 219.65184 * 8 7 5 10 10 O 1.21278 * 120.00165 * 354.91387 * 9 8 7 11 11 C 1.50701 * 119.99753 * 174.92033 * 9 8 7 12 12 C 1.50700 * 115.55087 * 293.66766 * 11 9 8 13 13 N 1.34778 * 119.99679 * 301.84887 * 12 11 9 14 14 O 1.21280 * 119.99974 * 121.84604 * 12 11 9 15 15 C 1.53004 * 117.49932 * 147.99520 * 11 9 8 16 16 C 1.53010 * 117.49804 * 79.33539 * 11 9 8 17 17 C 1.48433 * 104.18154 * 39.56899 * 8 7 5 18 18 C 1.54284 * 110.34107 * 123.00630 * 5 4 3 19 19 H 1.08994 * 110.34703 * 359.89918 * 18 5 4 20 20 N 1.46504 * 110.34371 * 237.74070 * 18 5 4 21 21 C 1.36936 * 119.99812 * 155.00312 * 20 18 5 22 22 H 1.08001 * 120.00445 * 0.02562 * 21 20 18 23 23 C 1.38813 * 120.00021 * 180.02562 * 21 20 18 24 24 N 1.31615 * 120.00008 * 179.97438 * 23 21 20 25 25 Si 1.86796 * 119.99884 * 359.97438 * 23 21 20 26 26 H 1.48499 * 109.47255 * 90.00343 * 25 23 21 27 27 H 1.48503 * 109.47143 * 210.00149 * 25 23 21 28 28 H 1.48501 * 109.47220 * 329.99963 * 25 23 21 29 29 C 1.39872 * 107.92057 * 0.26357 * 4 3 2 30 30 N 1.30838 * 108.20136 * 359.55483 * 29 4 3 31 31 H 1.08993 * 109.47193 * 90.00408 * 1 2 3 32 32 H 1.09002 * 109.46784 * 209.99869 * 1 2 3 33 33 H 1.09000 * 109.47355 * 329.99262 * 1 2 3 34 34 H 1.07995 * 126.13360 * 359.96270 * 3 2 1 35 35 H 1.09001 * 110.40604 * 336.04109 * 7 5 4 36 36 H 1.08998 * 110.40963 * 98.35825 * 7 5 4 37 37 H 0.97006 * 120.00006 * 355.01590 * 13 12 11 38 38 H 0.96992 * 119.99833 * 175.02589 * 13 12 11 39 39 H 1.09003 * 117.49832 * 0.02562 * 15 11 9 40 40 H 1.09000 * 117.49932 * 145.01693 * 15 11 9 41 41 H 1.09002 * 117.49637 * 214.97612 * 16 11 9 42 42 H 1.08998 * 117.49829 * 0.02562 * 16 11 9 43 43 H 1.09005 * 110.38638 * 201.64939 * 17 8 7 44 44 H 1.08999 * 110.49363 * 79.29433 * 17 8 7 45 45 H 0.96995 * 120.00058 * 335.00760 * 20 18 5 46 46 H 0.97007 * 119.99702 * 179.97438 * 24 23 21 47 47 H 1.08000 * 125.90083 * 179.74095 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2588 1.0913 0.0000 4 6 3.5437 0.6667 0.0006 5 6 4.7679 1.5454 0.0002 6 1 4.4807 2.5968 0.0133 7 6 5.6447 1.2440 -1.2343 8 7 7.0379 1.3627 -0.7446 9 6 8.0944 1.9062 -1.3810 10 8 7.9811 2.2892 -2.5261 11 6 9.4164 2.0376 -0.6696 12 6 9.4361 2.9953 0.4938 13 7 9.1055 4.2886 0.3076 14 8 9.7494 2.6023 1.5975 15 6 10.6873 1.9258 -1.5142 16 6 10.2926 0.7872 -0.5702 17 6 7.0021 0.7485 0.6063 18 6 5.6628 1.2188 1.2138 19 1 5.2161 0.4240 1.8111 20 7 5.8677 2.4163 2.0326 21 6 6.1658 2.2930 3.3634 22 1 6.2503 1.3130 3.8094 23 6 6.3594 3.4276 4.1393 24 7 6.6453 3.3091 5.4186 25 14 6.2140 5.1226 3.3679 26 1 4.8098 5.5946 3.4709 27 1 7.1081 6.0696 4.0814 28 1 6.6086 5.0512 1.9380 29 6 3.5347 -0.7320 -0.0052 30 7 2.2892 -1.1327 0.0006 31 1 -0.3633 -0.0001 -1.0276 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3634 0.8899 0.5139 34 1 1.9281 2.1194 -0.0006 35 1 5.4545 0.2342 -1.5981 36 1 5.4553 1.9729 -2.0221 37 1 8.9252 4.6193 -0.5863 38 1 9.0480 4.8887 1.0674 39 1 10.5671 1.7576 -2.5845 40 1 11.5377 2.5448 -1.2282 41 1 10.8836 0.6576 0.3365 42 1 9.9130 -0.1304 -1.0197 43 1 7.8383 1.1050 1.2078 44 1 7.0248 -0.3387 0.5319 45 1 5.7921 3.2964 1.6320 46 1 6.7810 4.1020 5.9607 47 1 4.4055 -1.3709 -0.0102 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086994427.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:17:52 Heat of formation + Delta-G solvation = 68.332720 kcal Electronic energy + Delta-G solvation = -32081.186113 eV Core-core repulsion = 27881.762119 eV Total energy + Delta-G solvation = -4199.423994 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.25473 -40.48567 -38.80550 -37.64031 -35.72863 -34.00362 -33.46698 -33.31971 -31.86375 -30.94197 -29.00543 -27.72686 -26.64764 -25.39377 -23.89992 -22.78961 -22.47219 -21.32341 -20.90149 -20.51472 -19.60286 -18.78915 -17.84248 -17.42778 -16.83482 -16.62425 -15.91749 -15.65533 -15.44809 -15.36043 -14.77972 -14.46981 -14.36385 -14.05530 -13.92499 -13.70385 -13.41047 -13.15270 -12.88646 -12.81281 -12.69336 -12.63892 -12.21741 -12.02990 -11.86053 -11.67859 -11.19661 -11.07076 -10.97871 -10.84739 -10.74374 -10.56450 -10.37265 -10.15940 -9.96662 -9.58675 -9.47924 -9.37858 -9.35546 -9.06896 -8.55004 -8.22611 -7.23940 -5.74363 -3.10109 1.94602 2.50374 2.55454 2.78787 2.86932 3.01533 3.30826 3.34407 3.41917 3.54162 3.85614 4.46558 4.51103 4.58704 4.73786 4.79983 4.86227 4.98911 4.99985 5.02218 5.05305 5.17268 5.23890 5.27405 5.46511 5.50362 5.59326 5.60718 5.66416 5.73710 5.75890 5.79015 5.89214 5.98206 6.03621 6.09782 6.33371 6.36795 6.50442 6.71710 6.81015 7.02317 7.03696 7.53464 7.70836 7.75057 7.99299 8.22742 8.43666 8.51304 9.20241 9.92674 10.10453 11.44077 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.008625 B = 0.004994 C = 0.003571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3245.654569 B = 5605.313763 C = 7839.469311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.381 5.381 3 C 0.060 3.940 4 C -0.211 4.211 5 C -0.034 4.034 6 H 0.085 0.915 7 C 0.117 3.883 8 N -0.606 5.606 9 C 0.578 3.422 10 O -0.547 6.547 11 C -0.190 4.190 12 C 0.562 3.438 13 N -0.848 5.848 14 O -0.507 6.507 15 C -0.131 4.131 16 C -0.128 4.128 17 C 0.064 3.936 18 C 0.183 3.817 19 H 0.080 0.920 20 N -0.734 5.734 21 C -0.239 4.239 22 H 0.091 0.909 23 C 0.011 3.989 24 N -0.930 5.930 25 Si 0.881 3.119 26 H -0.289 1.289 27 H -0.292 1.292 28 H -0.276 1.276 29 C 0.058 3.942 30 N -0.301 5.301 31 H 0.071 0.929 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.171 0.829 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.399 0.601 38 H 0.405 0.595 39 H 0.111 0.889 40 H 0.106 0.894 41 H 0.116 0.884 42 H 0.105 0.895 43 H 0.100 0.900 44 H 0.065 0.935 45 H 0.359 0.641 46 H 0.258 0.742 47 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.545 -3.741 -16.121 16.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.163 5.163 3 C -0.086 4.086 4 C -0.223 4.223 5 C -0.056 4.056 6 H 0.103 0.897 7 C -0.006 4.006 8 N -0.337 5.337 9 C 0.365 3.635 10 O -0.425 6.425 11 C -0.196 4.196 12 C 0.344 3.656 13 N -0.412 5.412 14 O -0.380 6.380 15 C -0.169 4.169 16 C -0.166 4.166 17 C -0.061 4.061 18 C 0.071 3.929 19 H 0.098 0.902 20 N -0.375 5.375 21 C -0.369 4.369 22 H 0.109 0.891 23 C -0.185 4.185 24 N -0.577 5.577 25 Si 0.712 3.288 26 H -0.216 1.216 27 H -0.219 1.219 28 H -0.203 1.203 29 C -0.128 4.128 30 N -0.122 5.122 31 H 0.089 0.911 32 H 0.105 0.895 33 H 0.104 0.896 34 H 0.189 0.811 35 H 0.091 0.909 36 H 0.096 0.904 37 H 0.227 0.773 38 H 0.237 0.763 39 H 0.129 0.871 40 H 0.124 0.876 41 H 0.134 0.866 42 H 0.124 0.876 43 H 0.118 0.882 44 H 0.083 0.917 45 H 0.192 0.808 46 H 0.068 0.932 47 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -4.219 -5.016 -15.836 17.138 hybrid contribution 0.152 2.554 -0.402 2.590 sum -4.066 -2.461 -16.238 16.919 Atomic orbital electron populations 1.21794 0.74543 1.04413 1.02965 1.48364 1.06421 1.03901 1.57638 1.22297 0.90841 0.93260 1.02157 1.19769 0.93605 0.93601 1.15321 1.20725 0.91301 0.98438 0.95132 0.89668 1.22369 0.79904 1.01778 0.96514 1.48919 1.08358 1.57388 1.19077 1.18586 0.82855 0.76990 0.85085 1.90678 1.83820 1.50796 1.17229 1.21410 0.92915 1.04058 1.01246 1.18850 0.76680 0.82261 0.87823 1.43714 1.73438 1.10947 1.13075 1.90849 1.45897 1.76874 1.24361 1.23066 0.94068 1.01420 0.98335 1.23072 0.99771 0.91460 1.02264 1.23792 1.03778 0.96629 0.81905 1.21158 0.90509 0.91325 0.89912 0.90212 1.42769 1.85326 1.01823 1.07599 1.19005 1.40015 0.94961 0.82910 0.89144 1.24604 1.01510 0.96982 0.95378 1.69688 1.54585 1.28255 1.05199 0.86622 0.77402 0.86312 0.78483 1.21559 1.21897 1.20261 1.23712 0.95034 0.94552 0.99519 1.77314 1.01688 1.08307 1.24881 0.91075 0.89477 0.89607 0.81138 0.90885 0.90449 0.77340 0.76290 0.87054 0.87590 0.86569 0.87626 0.88186 0.91693 0.80761 0.93185 0.80200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.80 11.47 59.85 0.69 1.49 16 2 N -0.38 -4.64 4.01 -68.16 -0.27 -4.91 16 3 C 0.06 0.74 11.40 -17.22 -0.20 0.54 16 4 C -0.21 -2.84 4.72 -105.05 -0.50 -3.34 16 5 C -0.03 -0.50 3.24 -90.37 -0.29 -0.79 16 6 H 0.09 1.28 7.66 -51.93 -0.40 0.88 16 7 C 0.12 1.60 6.53 -2.41 -0.02 1.58 16 8 N -0.61 -9.30 3.33 -169.06 -0.56 -9.87 16 9 C 0.58 9.22 7.14 -10.98 -0.08 9.15 16 10 O -0.55 -9.66 17.02 5.56 0.09 -9.56 16 11 C -0.19 -2.79 1.51 -156.80 -0.24 -3.03 16 12 C 0.56 9.72 6.51 -10.98 -0.07 9.65 16 13 N -0.85 -12.78 8.86 31.22 0.28 -12.51 16 14 O -0.51 -10.91 16.65 5.56 0.09 -10.82 16 15 C -0.13 -1.51 9.76 -26.69 -0.26 -1.77 16 16 C -0.13 -1.58 9.75 -26.68 -0.26 -1.84 16 17 C 0.06 1.05 6.64 -2.24 -0.01 1.04 16 18 C 0.18 3.22 3.27 -66.52 -0.22 3.00 16 19 H 0.08 1.48 7.40 -51.93 -0.38 1.09 16 20 N -0.73 -16.16 4.92 -52.07 -0.26 -16.42 16 21 C -0.24 -6.48 10.44 -15.06 -0.16 -6.64 16 22 H 0.09 2.67 8.06 -52.49 -0.42 2.24 16 23 C 0.01 0.32 5.50 -17.43 -0.10 0.23 16 24 N -0.93 -29.01 13.97 55.49 0.78 -28.23 16 25 Si 0.88 21.48 27.73 -169.99 -4.71 16.76 16 26 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 27 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 28 H -0.28 -6.12 6.52 56.52 0.37 -5.75 16 29 C 0.06 0.78 10.91 -17.36 -0.19 0.59 16 30 N -0.30 -4.28 12.58 30.63 0.39 -3.89 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.17 1.66 8.06 -52.49 -0.42 1.23 16 35 H 0.07 0.90 7.39 -51.93 -0.38 0.51 16 36 H 0.08 1.07 7.92 -51.93 -0.41 0.66 16 37 H 0.40 5.00 8.83 -40.82 -0.36 4.64 16 38 H 0.41 6.31 8.93 -40.82 -0.36 5.95 16 39 H 0.11 1.21 8.01 -51.93 -0.42 0.79 16 40 H 0.11 1.08 8.14 -51.93 -0.42 0.65 16 41 H 0.12 1.48 7.87 -51.93 -0.41 1.08 16 42 H 0.11 1.16 8.14 -51.93 -0.42 0.73 16 43 H 0.10 1.98 5.84 -51.93 -0.30 1.67 16 44 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.36 7.95 5.42 -40.82 -0.22 7.73 16 46 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 47 H 0.18 2.02 8.06 -52.49 -0.42 1.60 16 LS Contribution 395.19 15.07 5.96 5.96 Total: -1.00 -36.59 395.19 -6.75 -43.34 By element: Atomic # 1 Polarization: 26.92 SS G_CDS: -6.62 Total: 20.30 kcal Atomic # 6 Polarization: 11.75 SS G_CDS: -1.90 Total: 9.85 kcal Atomic # 7 Polarization: -76.17 SS G_CDS: 0.34 Total: -75.83 kcal Atomic # 8 Polarization: -20.56 SS G_CDS: 0.19 Total: -20.38 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.71 Total: 16.76 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -36.59 -6.75 -43.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086994427.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.670 kcal (2) G-P(sol) polarization free energy of solvation -36.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds