Wall clock time and date at job start Wed Apr 1 2020 05:17:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34945 * 126.03099 * 2 1 4 4 C 1.35317 * 107.74301 * 179.97438 * 3 2 1 5 5 C 1.50697 * 126.04300 * 179.97438 * 4 3 2 6 6 H 1.09002 * 110.38754 * 0.77744 * 5 4 3 7 7 C 1.54388 * 110.34527 * 238.54957 * 5 4 3 8 8 N 1.48150 * 104.71876 * 217.20477 * 7 5 4 9 9 C 1.34781 * 127.83397 * 219.65184 * 8 7 5 10 10 O 1.21278 * 120.00165 * 354.91387 * 9 8 7 11 11 C 1.50701 * 119.99753 * 174.92033 * 9 8 7 12 12 C 1.50700 * 115.55087 * 293.66766 * 11 9 8 13 13 N 1.34778 * 119.99679 * 301.84887 * 12 11 9 14 14 O 1.21280 * 119.99974 * 121.84604 * 12 11 9 15 15 C 1.53004 * 117.49932 * 147.99520 * 11 9 8 16 16 C 1.53010 * 117.49804 * 79.33539 * 11 9 8 17 17 C 1.48433 * 104.18154 * 39.56899 * 8 7 5 18 18 C 1.54284 * 110.34107 * 123.00630 * 5 4 3 19 19 H 1.08994 * 110.34703 * 359.89918 * 18 5 4 20 20 N 1.46504 * 110.34371 * 237.74070 * 18 5 4 21 21 C 1.36936 * 119.99812 * 155.00312 * 20 18 5 22 22 H 1.08001 * 120.00445 * 0.02562 * 21 20 18 23 23 C 1.38813 * 120.00021 * 180.02562 * 21 20 18 24 24 N 1.31615 * 120.00008 * 179.97438 * 23 21 20 25 25 Si 1.86796 * 119.99884 * 359.97438 * 23 21 20 26 26 H 1.48499 * 109.47255 * 90.00343 * 25 23 21 27 27 H 1.48503 * 109.47143 * 210.00149 * 25 23 21 28 28 H 1.48501 * 109.47220 * 329.99963 * 25 23 21 29 29 C 1.39872 * 107.92057 * 0.26357 * 4 3 2 30 30 N 1.30838 * 108.20136 * 359.55483 * 29 4 3 31 31 H 1.08993 * 109.47193 * 90.00408 * 1 2 3 32 32 H 1.09002 * 109.46784 * 209.99869 * 1 2 3 33 33 H 1.09000 * 109.47355 * 329.99262 * 1 2 3 34 34 H 1.07995 * 126.13360 * 359.96270 * 3 2 1 35 35 H 1.09001 * 110.40604 * 336.04109 * 7 5 4 36 36 H 1.08998 * 110.40963 * 98.35825 * 7 5 4 37 37 H 0.97006 * 120.00006 * 355.01590 * 13 12 11 38 38 H 0.96992 * 119.99833 * 175.02589 * 13 12 11 39 39 H 1.09003 * 117.49832 * 0.02562 * 15 11 9 40 40 H 1.09000 * 117.49932 * 145.01693 * 15 11 9 41 41 H 1.09002 * 117.49637 * 214.97612 * 16 11 9 42 42 H 1.08998 * 117.49829 * 0.02562 * 16 11 9 43 43 H 1.09005 * 110.38638 * 201.64939 * 17 8 7 44 44 H 1.08999 * 110.49363 * 79.29433 * 17 8 7 45 45 H 0.96995 * 120.00058 * 335.00760 * 20 18 5 46 46 H 0.97007 * 119.99702 * 179.97438 * 24 23 21 47 47 H 1.08000 * 125.90083 * 179.74095 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2588 1.0913 0.0000 4 6 3.5437 0.6667 0.0006 5 6 4.7679 1.5454 0.0002 6 1 4.4807 2.5968 0.0133 7 6 5.6447 1.2440 -1.2343 8 7 7.0379 1.3627 -0.7446 9 6 8.0944 1.9062 -1.3810 10 8 7.9811 2.2892 -2.5261 11 6 9.4164 2.0376 -0.6696 12 6 9.4361 2.9953 0.4938 13 7 9.1055 4.2886 0.3076 14 8 9.7494 2.6023 1.5975 15 6 10.6873 1.9258 -1.5142 16 6 10.2926 0.7872 -0.5702 17 6 7.0021 0.7485 0.6063 18 6 5.6628 1.2188 1.2138 19 1 5.2161 0.4240 1.8111 20 7 5.8677 2.4163 2.0326 21 6 6.1658 2.2930 3.3634 22 1 6.2503 1.3130 3.8094 23 6 6.3594 3.4276 4.1393 24 7 6.6453 3.3091 5.4186 25 14 6.2140 5.1226 3.3679 26 1 4.8098 5.5946 3.4709 27 1 7.1081 6.0696 4.0814 28 1 6.6086 5.0512 1.9380 29 6 3.5347 -0.7320 -0.0052 30 7 2.2892 -1.1327 0.0006 31 1 -0.3633 -0.0001 -1.0276 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3634 0.8899 0.5139 34 1 1.9281 2.1194 -0.0006 35 1 5.4545 0.2342 -1.5981 36 1 5.4553 1.9729 -2.0221 37 1 8.9252 4.6193 -0.5863 38 1 9.0480 4.8887 1.0674 39 1 10.5671 1.7576 -2.5845 40 1 11.5377 2.5448 -1.2282 41 1 10.8836 0.6576 0.3365 42 1 9.9130 -0.1304 -1.0197 43 1 7.8383 1.1050 1.2078 44 1 7.0248 -0.3387 0.5319 45 1 5.7921 3.2964 1.6320 46 1 6.7810 4.1020 5.9607 47 1 4.4055 -1.3709 -0.0102 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086994427.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:17:51 Heat of formation + Delta-G solvation = 39.418789 kcal Electronic energy + Delta-G solvation = -32082.439915 eV Core-core repulsion = 27881.762119 eV Total energy + Delta-G solvation = -4200.677796 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.26126 -41.68100 -40.12018 -38.96909 -36.87843 -35.79980 -34.64956 -34.41076 -33.36801 -32.50048 -30.11200 -29.16270 -27.55858 -26.55322 -25.50280 -24.22235 -23.45234 -22.44075 -22.12664 -21.71075 -20.87069 -20.03687 -19.50259 -18.83476 -18.07532 -17.70044 -17.27169 -16.84328 -16.65041 -16.39365 -16.23936 -15.83611 -15.62896 -15.33851 -15.17951 -14.94025 -14.78220 -14.56458 -14.32086 -13.87978 -13.72640 -13.70181 -13.47216 -13.26625 -13.11031 -12.91899 -12.61216 -12.42639 -12.34541 -12.23200 -12.16982 -11.91743 -11.75659 -11.65370 -11.38569 -11.25022 -11.01011 -10.79254 -10.70373 -10.29678 -9.88277 -9.40566 -9.02335 -7.94814 -5.27037 1.00592 1.25061 1.33614 1.39446 1.47147 1.53806 1.73322 1.80933 1.90830 2.37759 2.52708 2.74774 3.31846 3.34911 3.48039 3.70866 3.74992 3.79175 3.84685 3.89932 3.96082 4.09196 4.29434 4.34885 4.43300 4.48309 4.55276 4.58696 4.63102 4.66261 4.72467 4.74460 4.83874 4.84903 4.92212 5.02282 5.11285 5.15644 5.29901 5.41953 5.74536 5.75071 5.83929 6.18661 6.27540 6.32806 6.45219 6.78905 6.99634 7.14092 7.24462 7.88624 8.06436 9.27127 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.008625 B = 0.004994 C = 0.003571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3245.654569 B = 5605.313763 C = 7839.469311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.381 5.381 3 C 0.064 3.936 4 C -0.231 4.231 5 C -0.015 4.015 6 H 0.084 0.916 7 C 0.121 3.879 8 N -0.605 5.605 9 C 0.580 3.420 10 O -0.562 6.562 11 C -0.211 4.211 12 C 0.561 3.439 13 N -0.838 5.838 14 O -0.559 6.559 15 C -0.106 4.106 16 C -0.124 4.124 17 C 0.076 3.924 18 C 0.177 3.823 19 H 0.068 0.932 20 N -0.733 5.733 21 C -0.213 4.213 22 H 0.054 0.946 23 C -0.062 4.062 24 N -0.985 5.985 25 Si 0.949 3.051 26 H -0.284 1.284 27 H -0.304 1.304 28 H -0.244 1.244 29 C 0.052 3.948 30 N -0.331 5.331 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.108 0.892 34 H 0.197 0.803 35 H 0.091 0.909 36 H 0.082 0.918 37 H 0.412 0.588 38 H 0.403 0.597 39 H 0.124 0.876 40 H 0.120 0.880 41 H 0.107 0.893 42 H 0.121 0.879 43 H 0.068 0.932 44 H 0.091 0.909 45 H 0.362 0.638 46 H 0.252 0.748 47 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.540 -3.260 -19.358 20.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.164 5.164 3 C -0.083 4.083 4 C -0.243 4.243 5 C -0.037 4.037 6 H 0.102 0.898 7 C -0.001 4.001 8 N -0.336 5.336 9 C 0.368 3.632 10 O -0.441 6.441 11 C -0.217 4.217 12 C 0.344 3.656 13 N -0.402 5.402 14 O -0.436 6.436 15 C -0.143 4.143 16 C -0.162 4.162 17 C -0.050 4.050 18 C 0.067 3.933 19 H 0.086 0.914 20 N -0.375 5.375 21 C -0.344 4.344 22 H 0.072 0.928 23 C -0.253 4.253 24 N -0.636 5.636 25 Si 0.777 3.223 26 H -0.210 1.210 27 H -0.231 1.231 28 H -0.169 1.169 29 C -0.133 4.133 30 N -0.153 5.153 31 H 0.108 0.892 32 H 0.106 0.894 33 H 0.126 0.874 34 H 0.214 0.786 35 H 0.109 0.891 36 H 0.100 0.900 37 H 0.243 0.757 38 H 0.234 0.766 39 H 0.142 0.858 40 H 0.138 0.862 41 H 0.126 0.874 42 H 0.140 0.860 43 H 0.086 0.914 44 H 0.109 0.891 45 H 0.195 0.805 46 H 0.061 0.939 47 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -5.259 -4.559 -19.182 20.406 hybrid contribution 0.389 2.290 0.586 2.395 sum -4.870 -2.269 -18.596 19.356 Atomic orbital electron populations 1.22152 0.72197 1.05618 1.04591 1.48735 1.07831 1.03321 1.56471 1.22742 0.90614 0.94429 1.00533 1.19723 0.93738 0.93547 1.17333 1.20458 0.91211 0.98549 0.93443 0.89810 1.22463 0.78551 1.03019 0.96038 1.48938 1.09110 1.57173 1.18401 1.18683 0.83111 0.76525 0.84876 1.90670 1.84115 1.51478 1.17871 1.21356 0.93714 1.05184 1.01494 1.19266 0.75620 0.82910 0.87792 1.43691 1.72269 1.10398 1.13809 1.90827 1.48423 1.77864 1.26520 1.23210 0.92349 1.00182 0.98562 1.23163 0.98825 0.91758 1.02428 1.23489 1.01351 0.98041 0.82091 1.21336 0.91939 0.89402 0.90621 0.91355 1.42676 1.85308 1.03440 1.06088 1.18897 1.37331 0.93232 0.84947 0.92795 1.25398 1.02627 1.01451 0.95849 1.69893 1.57539 1.29022 1.07188 0.85505 0.77166 0.80516 0.79087 1.21025 1.23105 1.16859 1.23966 0.95376 0.94833 0.99149 1.77267 1.02283 1.09728 1.26044 0.89212 0.89368 0.87387 0.78569 0.89065 0.89991 0.75734 0.76597 0.85760 0.86198 0.87415 0.86028 0.91372 0.89068 0.80489 0.93874 0.78975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.20 11.47 127.77 1.47 2.66 16 2 N -0.38 -8.43 4.01 -369.56 -1.48 -9.91 16 3 C 0.06 1.40 11.40 83.54 0.95 2.35 16 4 C -0.23 -5.75 4.72 -20.14 -0.10 -5.85 16 5 C -0.02 -0.41 3.24 -10.63 -0.03 -0.44 16 6 H 0.08 2.29 7.66 -2.39 -0.02 2.27 16 7 C 0.12 2.98 6.53 86.53 0.57 3.54 16 8 N -0.60 -17.29 3.33 -807.18 -2.69 -19.97 16 9 C 0.58 17.20 7.14 87.66 0.63 17.83 16 10 O -0.56 -18.26 17.02 -3.02 -0.05 -18.31 16 11 C -0.21 -5.86 1.51 -53.67 -0.08 -5.94 16 12 C 0.56 19.01 6.51 87.66 0.57 19.59 16 13 N -0.84 -24.14 8.86 -173.53 -1.54 -25.67 16 14 O -0.56 -24.51 16.65 -3.03 -0.05 -24.56 16 15 C -0.11 -2.15 9.76 30.62 0.30 -1.85 16 16 C -0.12 -2.87 9.75 30.62 0.30 -2.57 16 17 C 0.08 2.40 6.64 86.48 0.57 2.98 16 18 C 0.18 6.08 3.27 45.90 0.15 6.23 16 19 H 0.07 2.53 7.40 -2.39 -0.02 2.51 16 20 N -0.73 -32.00 4.92 -318.64 -1.57 -33.56 16 21 C -0.21 -11.83 10.44 84.03 0.88 -10.95 16 22 H 0.05 3.34 8.06 -2.91 -0.02 3.32 16 23 C -0.06 -3.66 5.50 84.86 0.47 -3.19 16 24 N -0.99 -63.94 13.97 21.65 0.30 -63.64 16 25 Si 0.95 44.83 27.73 68.60 1.90 46.73 16 26 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 27 H -0.30 -14.86 7.11 99.48 0.71 -14.16 16 28 H -0.24 -10.00 6.52 99.48 0.65 -9.35 16 29 C 0.05 1.31 10.91 85.24 0.93 2.24 16 30 N -0.33 -8.93 12.58 -57.02 -0.72 -9.65 16 31 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.20 3.12 8.06 -2.91 -0.02 3.09 16 35 H 0.09 1.95 7.39 -2.39 -0.02 1.93 16 36 H 0.08 2.00 7.92 -2.39 -0.02 1.98 16 37 H 0.41 9.47 8.83 -92.70 -0.82 8.65 16 38 H 0.40 12.08 8.93 -92.71 -0.83 11.25 16 39 H 0.12 2.27 8.01 -2.39 -0.02 2.25 16 40 H 0.12 2.11 8.14 -2.39 -0.02 2.09 16 41 H 0.11 2.70 7.87 -2.39 -0.02 2.68 16 42 H 0.12 2.38 8.14 -2.39 -0.02 2.36 16 43 H 0.07 2.70 5.84 -2.38 -0.01 2.68 16 44 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 45 H 0.36 15.43 5.42 -92.71 -0.50 14.93 16 46 H 0.25 15.77 8.31 -92.70 -0.77 15.00 16 47 H 0.19 4.03 8.06 -2.91 -0.02 4.00 16 Total: -1.00 -82.14 395.19 0.51 -81.63 By element: Atomic # 1 Polarization: 51.45 SS G_CDS: -1.17 Total: 50.28 kcal Atomic # 6 Polarization: 19.07 SS G_CDS: 7.56 Total: 26.64 kcal Atomic # 7 Polarization: -154.72 SS G_CDS: -7.69 Total: -162.41 kcal Atomic # 8 Polarization: -42.77 SS G_CDS: -0.10 Total: -42.87 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 1.90 Total: 46.73 kcal Total: -82.14 0.51 -81.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086994427.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.046 kcal (2) G-P(sol) polarization free energy of solvation -82.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.627 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds