Wall clock time and date at job start Wed Apr 1 2020 05:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34956 * 126.03406 * 2 1 4 4 C 1.35309 * 107.74493 * 180.02562 * 3 2 1 5 5 C 1.50698 * 126.04086 * 179.97438 * 4 3 2 6 6 H 1.08994 * 110.65603 * 356.81219 * 5 4 3 7 7 C 1.54598 * 110.99051 * 233.65242 * 5 4 3 8 8 N 1.48110 * 103.42389 * 204.37172 * 7 5 4 9 9 C 1.34782 * 127.03408 * 219.28778 * 8 7 5 10 10 O 1.21278 * 119.99918 * 359.71345 * 9 8 7 11 11 C 1.50701 * 119.99818 * 179.71064 * 9 8 7 12 12 H 1.09002 * 110.21677 * 40.70095 * 11 9 8 13 13 C 1.54480 * 110.24535 * 278.77063 * 11 9 8 14 14 C 1.54631 * 101.76472 * 215.49665 * 13 11 9 15 15 C 1.51284 * 104.19385 * 24.79861 * 14 13 11 16 16 O 1.21286 * 124.94229 * 163.74611 * 15 14 13 17 17 N 1.34621 * 110.15232 * 343.76674 * 15 14 13 18 18 C 1.47489 * 105.93517 * 39.02800 * 8 7 5 19 19 C 1.54009 * 107.07881 * 334.77532 * 18 8 7 20 20 H 1.09010 * 110.32252 * 120.19636 * 19 18 8 21 21 N 1.46500 * 110.32694 * 242.30712 * 19 18 8 22 22 C 1.36934 * 120.00317 * 273.54972 * 21 19 18 23 23 H 1.08000 * 119.99721 * 0.02562 * 22 21 19 24 24 C 1.38813 * 119.99821 * 180.02562 * 22 21 19 25 25 N 1.31613 * 119.99912 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 119.99758 * 180.02562 * 24 22 21 27 27 H 1.48492 * 109.47214 * 89.99852 * 26 24 22 28 28 H 1.48505 * 109.47068 * 210.00230 * 26 24 22 29 29 H 1.48505 * 109.47001 * 329.99778 * 26 24 22 30 30 C 1.39873 * 107.92323 * 0.26213 * 4 3 2 31 31 N 1.30842 * 108.19908 * 359.55838 * 30 4 3 32 32 H 1.08999 * 109.47063 * 90.00537 * 1 2 3 33 33 H 1.09006 * 109.47120 * 209.99875 * 1 2 3 34 34 H 1.08998 * 109.47394 * 329.99930 * 1 2 3 35 35 H 1.07995 * 126.12580 * 0.04113 * 3 2 1 36 36 H 1.09008 * 110.61345 * 85.86063 * 7 5 4 37 37 H 1.08996 * 110.54568 * 322.85611 * 7 5 4 38 38 H 1.08995 * 110.97082 * 333.61678 * 13 11 9 39 39 H 1.08996 * 110.96783 * 97.34281 * 13 11 9 40 40 H 1.09000 * 110.48694 * 143.47575 * 14 13 11 41 41 H 1.08994 * 110.49106 * 266.12244 * 14 13 11 42 42 H 0.96999 * 124.46827 * 179.53134 * 17 15 14 43 43 H 1.08997 * 109.91505 * 94.13408 * 18 8 7 44 44 H 1.08996 * 109.91359 * 215.42171 * 18 8 7 45 45 H 0.96999 * 119.99254 * 93.55090 * 21 19 18 46 46 H 0.97003 * 119.99599 * 180.02562 * 25 24 22 47 47 H 1.08001 * 125.90330 * 179.72862 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5437 0.6667 -0.0006 5 6 4.7679 1.5455 -0.0013 6 1 4.4865 2.5969 -0.0581 7 6 5.7161 1.1732 -1.1643 8 7 7.0394 1.6423 -0.6927 9 6 7.9990 2.2379 -1.4282 10 8 7.8214 2.4346 -2.6117 11 6 9.2925 2.6594 -0.7800 12 1 9.6266 1.8977 -0.0755 13 6 9.1123 4.0132 -0.0580 14 6 10.4868 4.6814 -0.2933 15 6 11.0109 4.0197 -1.5488 16 8 11.9210 4.4435 -2.2293 17 7 10.3203 2.8921 -1.8016 18 6 7.0898 1.3302 0.7479 19 6 5.6350 1.2776 1.2505 20 1 5.4119 0.2931 1.6620 21 7 5.4078 2.3139 2.2608 22 6 5.6925 2.0618 3.5763 23 1 6.0848 1.0991 3.8690 24 6 5.4767 3.0436 4.5336 25 7 4.9981 4.2166 4.1769 26 14 5.8657 2.6999 6.3280 27 1 7.2722 3.0823 6.6117 28 1 4.9536 3.4910 7.1926 29 1 5.6803 1.2530 6.6064 30 6 3.5347 -0.7320 -0.0070 31 7 2.2892 -1.1327 -0.0006 32 1 -0.3633 -0.0001 -1.0277 33 1 -0.3634 -0.8900 0.5138 34 1 -0.3634 0.8899 0.5138 35 1 1.9281 2.1194 0.0006 36 1 5.4264 1.6938 -2.0772 37 1 5.7238 0.0947 -1.3213 38 1 8.3122 4.5955 -0.5148 39 1 8.9265 3.8661 1.0059 40 1 10.3681 5.7538 -0.4484 41 1 11.1539 4.4881 0.5467 42 1 10.4801 2.3089 -2.5600 43 1 7.5709 0.3643 0.9019 44 1 7.6376 2.1095 1.2777 45 1 5.0558 3.1786 1.9978 46 1 4.8477 4.9027 4.8459 47 1 4.4055 -1.3709 -0.0132 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087006522.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:18:03 Heat of formation + Delta-G solvation = 36.493543 kcal Electronic energy + Delta-G solvation = -30977.794463 eV Core-core repulsion = 26776.989819 eV Total energy + Delta-G solvation = -4200.804645 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.17376 -40.73843 -39.27207 -37.57451 -36.08135 -34.11215 -33.45360 -31.97713 -31.32852 -30.77870 -29.34457 -27.94928 -27.49821 -26.10604 -24.31103 -23.12883 -22.18867 -21.20739 -20.62030 -20.58217 -19.54537 -19.35444 -17.62985 -17.26414 -17.18391 -16.53565 -15.91757 -15.65654 -15.47409 -15.30288 -14.76612 -14.54408 -14.28210 -13.89289 -13.68053 -13.54391 -13.47678 -13.32234 -13.14084 -12.88500 -12.82023 -12.64275 -12.54290 -12.34996 -12.04245 -11.80636 -11.74833 -11.21801 -11.18075 -10.91171 -10.90488 -10.72057 -10.25892 -10.20472 -10.02894 -9.88922 -9.84070 -9.27990 -9.20282 -9.07920 -8.56790 -8.12909 -7.11899 -5.91604 -3.21659 2.03586 2.49001 2.56466 2.62455 2.87966 2.98375 3.33576 3.40380 3.41564 3.42409 4.25703 4.29443 4.45237 4.54428 4.58277 4.85388 4.92735 4.96919 5.03751 5.06979 5.13393 5.18277 5.31009 5.31308 5.35787 5.49301 5.54432 5.61836 5.68951 5.73094 5.81059 5.82874 5.88284 5.92639 6.06854 6.19900 6.24459 6.40352 6.43702 6.63839 6.79706 6.81373 6.92406 7.12321 7.57184 7.66197 7.82425 8.11178 8.22367 8.25921 9.38375 9.92198 10.26868 11.30095 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.007439 B = 0.003969 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3762.924007 B = 7052.442813 C =10182.181179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.381 5.381 3 C 0.064 3.936 4 C -0.208 4.208 5 C -0.030 4.030 6 H 0.088 0.912 7 C 0.117 3.883 8 N -0.609 5.609 9 C 0.525 3.475 10 O -0.544 6.544 11 C 0.118 3.882 12 H 0.106 0.894 13 C -0.120 4.120 14 C -0.154 4.154 15 C 0.524 3.476 16 O -0.538 6.538 17 N -0.710 5.710 18 C 0.065 3.935 19 C 0.179 3.821 20 H 0.069 0.931 21 N -0.711 5.711 22 C -0.245 4.245 23 H 0.072 0.928 24 C -0.006 4.006 25 N -0.929 5.929 26 Si 0.903 3.097 27 H -0.289 1.289 28 H -0.292 1.292 29 H -0.282 1.282 30 C 0.056 3.944 31 N -0.303 5.303 32 H 0.070 0.930 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.172 0.828 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.088 0.912 39 H 0.109 0.891 40 H 0.106 0.894 41 H 0.109 0.891 42 H 0.413 0.587 43 H 0.060 0.940 44 H 0.088 0.912 45 H 0.385 0.615 46 H 0.256 0.744 47 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.676 -5.780 -7.996 10.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.163 5.163 3 C -0.081 4.081 4 C -0.220 4.220 5 C -0.051 4.051 6 H 0.106 0.894 7 C -0.006 4.006 8 N -0.342 5.342 9 C 0.312 3.688 10 O -0.422 6.422 11 C 0.009 3.991 12 H 0.123 0.877 13 C -0.158 4.158 14 C -0.194 4.194 15 C 0.311 3.689 16 O -0.414 6.414 17 N -0.366 5.366 18 C -0.061 4.061 19 C 0.067 3.933 20 H 0.087 0.913 21 N -0.351 5.351 22 C -0.376 4.376 23 H 0.090 0.910 24 C -0.203 4.203 25 N -0.576 5.576 26 Si 0.734 3.266 27 H -0.216 1.216 28 H -0.218 1.218 29 H -0.207 1.207 30 C -0.131 4.131 31 N -0.125 5.125 32 H 0.089 0.911 33 H 0.104 0.896 34 H 0.104 0.896 35 H 0.189 0.811 36 H 0.098 0.902 37 H 0.090 0.910 38 H 0.107 0.893 39 H 0.128 0.872 40 H 0.124 0.876 41 H 0.128 0.872 42 H 0.253 0.747 43 H 0.078 0.922 44 H 0.106 0.894 45 H 0.220 0.780 46 H 0.066 0.934 47 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -2.173 -6.390 -8.729 11.034 hybrid contribution 0.470 0.519 0.857 1.106 sum -1.702 -5.871 -7.873 9.967 Atomic orbital electron populations 1.21786 0.74619 1.04393 1.02897 1.48342 1.06381 1.03915 1.57705 1.22309 0.90852 0.93249 1.01725 1.19676 0.93657 0.93425 1.15206 1.20724 0.90912 0.98495 0.94983 0.89410 1.22396 0.81207 0.99265 0.97683 1.48771 1.16168 1.57913 1.11337 1.20214 0.84713 0.77429 0.86472 1.90711 1.80229 1.55808 1.15437 1.21560 0.86922 1.00390 0.90271 0.87685 1.22619 0.97531 0.92778 1.02869 1.22374 0.97506 1.02345 0.97180 1.20947 0.81206 0.80359 0.86408 1.90745 1.29961 1.66676 1.54058 1.46003 1.35146 1.26827 1.28577 1.23621 1.02963 1.00686 0.78787 1.21154 0.89134 0.94655 0.88383 0.91298 1.42438 1.76864 1.12975 1.02871 1.19209 1.36436 0.98358 0.83617 0.91038 1.24711 1.01537 0.96091 0.97931 1.69647 1.50436 1.04460 1.33060 0.86260 0.77681 0.77392 0.85243 1.21596 1.21837 1.20735 1.23669 0.94997 0.94599 0.99786 1.77284 1.01698 1.08432 1.25050 0.91129 0.89579 0.89562 0.81086 0.90237 0.90960 0.89299 0.87223 0.87556 0.87247 0.74732 0.92202 0.89403 0.78030 0.93402 0.80381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.88 11.47 59.85 0.69 1.56 16 2 N -0.38 -4.90 4.01 -68.16 -0.27 -5.17 16 3 C 0.06 0.84 11.40 -17.22 -0.20 0.64 16 4 C -0.21 -2.86 4.93 -105.06 -0.52 -3.38 16 5 C -0.03 -0.41 3.16 -90.08 -0.28 -0.70 16 6 H 0.09 1.31 7.74 -51.93 -0.40 0.91 16 7 C 0.12 1.51 6.50 -2.32 -0.02 1.49 16 8 N -0.61 -8.10 3.29 -169.98 -0.56 -8.66 16 9 C 0.52 7.40 7.08 -10.98 -0.08 7.32 16 10 O -0.54 -9.42 16.77 5.56 0.09 -9.33 16 11 C 0.12 1.36 3.15 -68.16 -0.21 1.15 16 12 H 0.11 1.02 7.81 -51.93 -0.41 0.61 16 13 C -0.12 -1.32 6.33 -25.10 -0.16 -1.48 16 14 C -0.15 -1.62 6.86 -26.74 -0.18 -1.80 16 15 C 0.52 7.16 8.44 -10.77 -0.09 7.07 16 16 O -0.54 -9.34 18.03 5.55 0.10 -9.24 16 17 N -0.71 -8.78 5.48 -53.83 -0.29 -9.08 16 18 C 0.07 0.89 6.34 -2.97 -0.02 0.87 16 19 C 0.18 2.85 3.18 -66.55 -0.21 2.64 16 20 H 0.07 1.14 7.44 -51.92 -0.39 0.76 16 21 N -0.71 -14.79 5.07 -52.09 -0.26 -15.06 16 22 C -0.25 -5.87 9.97 -15.06 -0.15 -6.02 16 23 H 0.07 1.67 7.83 -52.49 -0.41 1.26 16 24 C -0.01 -0.15 5.50 -17.43 -0.10 -0.25 16 25 N -0.93 -25.24 13.06 55.49 0.72 -24.52 16 26 Si 0.90 20.48 29.55 -169.99 -5.02 15.45 16 27 H -0.29 -6.52 7.11 56.52 0.40 -6.11 16 28 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 29 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 30 C 0.06 0.75 10.82 -17.36 -0.19 0.57 16 31 N -0.30 -4.44 12.58 30.63 0.39 -4.06 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.17 1.87 8.06 -52.49 -0.42 1.44 16 36 H 0.08 1.08 7.85 -51.92 -0.41 0.68 16 37 H 0.07 0.84 7.45 -51.93 -0.39 0.45 16 38 H 0.09 1.08 7.91 -51.93 -0.41 0.67 16 39 H 0.11 1.17 7.50 -51.93 -0.39 0.78 16 40 H 0.11 1.05 8.14 -51.93 -0.42 0.62 16 41 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.41 4.95 8.95 -40.82 -0.37 4.59 16 43 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.09 1.28 6.53 -51.93 -0.34 0.94 16 45 H 0.39 8.74 7.55 -40.82 -0.31 8.44 16 46 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 47 H 0.18 1.97 8.01 -52.49 -0.42 1.55 16 LS Contribution 392.07 15.07 5.91 5.91 Total: -1.00 -33.35 392.07 -7.65 -41.00 By element: Atomic # 1 Polarization: 19.80 SS G_CDS: -6.73 Total: 13.08 kcal Atomic # 6 Polarization: 11.39 SS G_CDS: -1.72 Total: 9.67 kcal Atomic # 7 Polarization: -66.27 SS G_CDS: -0.28 Total: -66.55 kcal Atomic # 8 Polarization: -18.76 SS G_CDS: 0.19 Total: -18.56 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.35 -7.65 -41.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087006522.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.494 kcal (2) G-P(sol) polarization free energy of solvation -33.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.001 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds