Wall clock time and date at job start Wed Apr 1 2020 05:18:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34956 * 126.03406 * 2 1 4 4 C 1.35309 * 107.74493 * 180.02562 * 3 2 1 5 5 C 1.50698 * 126.04086 * 179.97438 * 4 3 2 6 6 H 1.08994 * 110.65603 * 356.81219 * 5 4 3 7 7 C 1.54598 * 110.99051 * 233.65242 * 5 4 3 8 8 N 1.48110 * 103.42389 * 204.37172 * 7 5 4 9 9 C 1.34782 * 127.03408 * 219.28778 * 8 7 5 10 10 O 1.21278 * 119.99918 * 359.71345 * 9 8 7 11 11 C 1.50701 * 119.99818 * 179.71064 * 9 8 7 12 12 H 1.09002 * 110.21677 * 40.70095 * 11 9 8 13 13 C 1.54480 * 110.24535 * 278.77063 * 11 9 8 14 14 C 1.54631 * 101.76472 * 215.49665 * 13 11 9 15 15 C 1.51284 * 104.19385 * 24.79861 * 14 13 11 16 16 O 1.21286 * 124.94229 * 163.74611 * 15 14 13 17 17 N 1.34621 * 110.15232 * 343.76674 * 15 14 13 18 18 C 1.47489 * 105.93517 * 39.02800 * 8 7 5 19 19 C 1.54009 * 107.07881 * 334.77532 * 18 8 7 20 20 H 1.09010 * 110.32252 * 120.19636 * 19 18 8 21 21 N 1.46500 * 110.32694 * 242.30712 * 19 18 8 22 22 C 1.36934 * 120.00317 * 273.54972 * 21 19 18 23 23 H 1.08000 * 119.99721 * 0.02562 * 22 21 19 24 24 C 1.38813 * 119.99821 * 180.02562 * 22 21 19 25 25 N 1.31613 * 119.99912 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 119.99758 * 180.02562 * 24 22 21 27 27 H 1.48492 * 109.47214 * 89.99852 * 26 24 22 28 28 H 1.48505 * 109.47068 * 210.00230 * 26 24 22 29 29 H 1.48505 * 109.47001 * 329.99778 * 26 24 22 30 30 C 1.39873 * 107.92323 * 0.26213 * 4 3 2 31 31 N 1.30842 * 108.19908 * 359.55838 * 30 4 3 32 32 H 1.08999 * 109.47063 * 90.00537 * 1 2 3 33 33 H 1.09006 * 109.47120 * 209.99875 * 1 2 3 34 34 H 1.08998 * 109.47394 * 329.99930 * 1 2 3 35 35 H 1.07995 * 126.12580 * 0.04113 * 3 2 1 36 36 H 1.09008 * 110.61345 * 85.86063 * 7 5 4 37 37 H 1.08996 * 110.54568 * 322.85611 * 7 5 4 38 38 H 1.08995 * 110.97082 * 333.61678 * 13 11 9 39 39 H 1.08996 * 110.96783 * 97.34281 * 13 11 9 40 40 H 1.09000 * 110.48694 * 143.47575 * 14 13 11 41 41 H 1.08994 * 110.49106 * 266.12244 * 14 13 11 42 42 H 0.96999 * 124.46827 * 179.53134 * 17 15 14 43 43 H 1.08997 * 109.91505 * 94.13408 * 18 8 7 44 44 H 1.08996 * 109.91359 * 215.42171 * 18 8 7 45 45 H 0.96999 * 119.99254 * 93.55090 * 21 19 18 46 46 H 0.97003 * 119.99599 * 180.02562 * 25 24 22 47 47 H 1.08001 * 125.90330 * 179.72862 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5437 0.6667 -0.0006 5 6 4.7679 1.5455 -0.0013 6 1 4.4865 2.5969 -0.0581 7 6 5.7161 1.1732 -1.1643 8 7 7.0394 1.6423 -0.6927 9 6 7.9990 2.2379 -1.4282 10 8 7.8214 2.4346 -2.6117 11 6 9.2925 2.6594 -0.7800 12 1 9.6266 1.8977 -0.0755 13 6 9.1123 4.0132 -0.0580 14 6 10.4868 4.6814 -0.2933 15 6 11.0109 4.0197 -1.5488 16 8 11.9210 4.4435 -2.2293 17 7 10.3203 2.8921 -1.8016 18 6 7.0898 1.3302 0.7479 19 6 5.6350 1.2776 1.2505 20 1 5.4119 0.2931 1.6620 21 7 5.4078 2.3139 2.2608 22 6 5.6925 2.0618 3.5763 23 1 6.0848 1.0991 3.8690 24 6 5.4767 3.0436 4.5336 25 7 4.9981 4.2166 4.1769 26 14 5.8657 2.6999 6.3280 27 1 7.2722 3.0823 6.6117 28 1 4.9536 3.4910 7.1926 29 1 5.6803 1.2530 6.6064 30 6 3.5347 -0.7320 -0.0070 31 7 2.2892 -1.1327 -0.0006 32 1 -0.3633 -0.0001 -1.0277 33 1 -0.3634 -0.8900 0.5138 34 1 -0.3634 0.8899 0.5138 35 1 1.9281 2.1194 0.0006 36 1 5.4264 1.6938 -2.0772 37 1 5.7238 0.0947 -1.3213 38 1 8.3122 4.5955 -0.5148 39 1 8.9265 3.8661 1.0059 40 1 10.3681 5.7538 -0.4484 41 1 11.1539 4.4881 0.5467 42 1 10.4801 2.3089 -2.5600 43 1 7.5709 0.3643 0.9019 44 1 7.6376 2.1095 1.2777 45 1 5.0558 3.1786 1.9978 46 1 4.8477 4.9027 4.8459 47 1 4.4055 -1.3709 -0.0132 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087006522.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:18:01 Heat of formation + Delta-G solvation = 12.237793 kcal Electronic energy + Delta-G solvation = -30978.846271 eV Core-core repulsion = 26776.989819 eV Total energy + Delta-G solvation = -4201.856453 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.20020 -41.78087 -40.40449 -38.79747 -37.20961 -35.71686 -34.44266 -33.23147 -32.34276 -32.17737 -30.39189 -29.04414 -28.74936 -27.01268 -25.84921 -24.39377 -23.18113 -22.31679 -21.71815 -21.58449 -20.68234 -20.44212 -19.04345 -18.52866 -18.32084 -17.60390 -17.08176 -16.76819 -16.62924 -16.27197 -16.19879 -15.67618 -15.30712 -15.27121 -15.01054 -14.71122 -14.66302 -14.56227 -14.12509 -13.78202 -13.75550 -13.64440 -13.53513 -13.39597 -13.19508 -13.03751 -12.86151 -12.75936 -12.48833 -12.27804 -12.14453 -12.08039 -11.79712 -11.64655 -11.33811 -11.18506 -11.01519 -10.89787 -10.26930 -10.19600 -9.71783 -9.24720 -8.79993 -7.83041 -5.09621 1.03329 1.42935 1.45785 1.55518 1.58284 1.63642 1.74851 1.84031 1.93911 2.41183 2.65292 3.26736 3.32684 3.49476 3.60337 3.64829 3.94202 3.97375 3.99046 4.02565 4.08780 4.13321 4.35766 4.45585 4.46219 4.47706 4.51029 4.64302 4.70871 4.72198 4.80516 4.84251 4.88315 4.94862 4.99761 5.06446 5.10550 5.25666 5.34738 5.55040 5.65073 5.69456 5.80420 5.90606 6.20071 6.37930 6.54024 6.81650 7.01646 7.15405 7.47133 8.20782 8.43741 9.39586 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.007439 B = 0.003969 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3762.924007 B = 7052.442813 C =10182.181179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.383 5.383 3 C 0.057 3.943 4 C -0.225 4.225 5 C -0.015 4.015 6 H 0.073 0.927 7 C 0.122 3.878 8 N -0.604 5.604 9 C 0.524 3.476 10 O -0.580 6.580 11 C 0.122 3.878 12 H 0.134 0.866 13 C -0.115 4.115 14 C -0.144 4.144 15 C 0.518 3.482 16 O -0.581 6.581 17 N -0.707 5.707 18 C 0.075 3.925 19 C 0.176 3.824 20 H 0.068 0.932 21 N -0.720 5.720 22 C -0.226 4.226 23 H 0.080 0.920 24 C -0.064 4.064 25 N -0.964 5.964 26 Si 0.955 3.045 27 H -0.287 1.287 28 H -0.307 1.307 29 H -0.274 1.274 30 C 0.052 3.948 31 N -0.332 5.332 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.104 0.896 35 H 0.188 0.812 36 H 0.071 0.929 37 H 0.091 0.909 38 H 0.074 0.926 39 H 0.119 0.881 40 H 0.113 0.887 41 H 0.135 0.865 42 H 0.413 0.587 43 H 0.088 0.912 44 H 0.083 0.917 45 H 0.374 0.626 46 H 0.247 0.753 47 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.468 -7.148 -7.565 10.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.165 5.165 3 C -0.089 4.089 4 C -0.237 4.237 5 C -0.036 4.036 6 H 0.092 0.908 7 C -0.001 4.001 8 N -0.336 5.336 9 C 0.312 3.688 10 O -0.460 6.460 11 C 0.013 3.987 12 H 0.152 0.848 13 C -0.153 4.153 14 C -0.184 4.184 15 C 0.306 3.694 16 O -0.461 6.461 17 N -0.361 5.361 18 C -0.050 4.050 19 C 0.066 3.934 20 H 0.086 0.914 21 N -0.359 5.359 22 C -0.358 4.358 23 H 0.097 0.903 24 C -0.257 4.257 25 N -0.615 5.615 26 Si 0.786 3.214 27 H -0.214 1.214 28 H -0.235 1.235 29 H -0.200 1.200 30 C -0.134 4.134 31 N -0.154 5.154 32 H 0.107 0.893 33 H 0.108 0.892 34 H 0.123 0.877 35 H 0.205 0.795 36 H 0.089 0.911 37 H 0.109 0.891 38 H 0.093 0.907 39 H 0.137 0.863 40 H 0.132 0.868 41 H 0.152 0.848 42 H 0.253 0.747 43 H 0.106 0.894 44 H 0.102 0.898 45 H 0.206 0.794 46 H 0.056 0.944 47 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -1.984 -7.841 -8.303 11.591 hybrid contribution 0.291 0.857 0.637 1.107 sum -1.693 -6.985 -7.665 10.508 Atomic orbital electron populations 1.22124 0.72401 1.05514 1.04477 1.48698 1.07745 1.03323 1.56781 1.22680 0.91062 0.94162 1.01011 1.19740 0.93812 0.93661 1.16493 1.20496 0.91039 0.97777 0.94284 0.90825 1.22407 0.80678 1.00232 0.96800 1.48759 1.16198 1.57493 1.11186 1.20615 0.85414 0.76716 0.86049 1.90702 1.81033 1.57211 1.17068 1.21698 0.85433 1.01411 0.90120 0.84817 1.22594 0.97367 0.92244 1.03100 1.22401 0.97274 1.02399 0.96305 1.21463 0.80588 0.80401 0.86911 1.90720 1.31992 1.67769 1.55668 1.46071 1.34837 1.26471 1.28692 1.23375 1.01024 1.02030 0.78543 1.21313 0.90942 0.93083 0.88098 0.91385 1.42550 1.76900 1.13510 1.02900 1.19545 1.33505 0.97930 0.84814 0.90261 1.25280 1.03191 0.96385 1.00849 1.69778 1.53099 1.05281 1.33348 0.85421 0.77017 0.77129 0.81847 1.21410 1.23479 1.19960 1.24000 0.95415 0.94716 0.99220 1.77229 1.02378 1.09657 1.26101 0.89314 0.89214 0.87735 0.79493 0.91062 0.89076 0.90725 0.86258 0.86831 0.84757 0.74732 0.89413 0.89849 0.79352 0.94415 0.78466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.42 11.47 127.77 1.47 2.89 16 2 N -0.38 -9.31 4.01 -369.56 -1.48 -10.80 16 3 C 0.06 1.44 11.40 83.54 0.95 2.39 16 4 C -0.23 -5.90 4.93 -20.14 -0.10 -6.00 16 5 C -0.01 -0.39 3.16 -10.44 -0.03 -0.42 16 6 H 0.07 2.18 7.74 -2.39 -0.02 2.16 16 7 C 0.12 2.92 6.50 86.61 0.56 3.48 16 8 N -0.60 -14.82 3.29 -810.07 -2.67 -17.49 16 9 C 0.52 13.91 7.08 87.66 0.62 14.53 16 10 O -0.58 -19.65 16.77 -3.02 -0.05 -19.70 16 11 C 0.12 2.55 3.15 44.70 0.14 2.69 16 12 H 0.13 2.10 7.81 -2.39 -0.02 2.08 16 13 C -0.11 -2.31 6.33 31.65 0.20 -2.11 16 14 C -0.14 -2.74 6.86 30.59 0.21 -2.53 16 15 C 0.52 13.64 8.44 87.87 0.74 14.38 16 16 O -0.58 -20.14 18.03 -3.05 -0.05 -20.19 16 17 N -0.71 -16.58 5.48 -442.68 -2.43 -19.01 16 18 C 0.08 1.83 6.34 86.53 0.55 2.38 16 19 C 0.18 5.25 3.18 45.88 0.15 5.40 16 20 H 0.07 2.09 7.44 -2.38 -0.02 2.07 16 21 N -0.72 -29.10 5.07 -318.71 -1.62 -30.72 16 22 C -0.23 -10.49 9.97 84.03 0.84 -9.65 16 23 H 0.08 3.52 7.83 -2.91 -0.02 3.49 16 24 C -0.06 -3.25 5.50 84.86 0.47 -2.78 16 25 N -0.96 -52.78 13.06 21.65 0.28 -52.49 16 26 Si 0.95 41.68 29.55 68.60 2.03 43.71 16 27 H -0.29 -12.28 7.11 99.48 0.71 -11.58 16 28 H -0.31 -14.07 7.11 99.48 0.71 -13.36 16 29 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 30 C 0.05 1.32 10.82 85.24 0.92 2.24 16 31 N -0.33 -9.28 12.58 -57.02 -0.72 -10.00 16 32 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 34 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.19 3.87 8.06 -2.91 -0.02 3.85 16 36 H 0.07 1.87 7.85 -2.38 -0.02 1.85 16 37 H 0.09 1.88 7.45 -2.39 -0.02 1.86 16 38 H 0.07 1.73 7.91 -2.39 -0.02 1.71 16 39 H 0.12 2.22 7.50 -2.39 -0.02 2.20 16 40 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 41 H 0.13 1.93 8.14 -2.39 -0.02 1.91 16 42 H 0.41 9.59 8.95 -92.71 -0.83 8.76 16 43 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 44 H 0.08 2.18 6.53 -2.39 -0.02 2.16 16 45 H 0.37 16.89 7.55 -92.71 -0.70 16.19 16 46 H 0.25 13.45 8.31 -92.71 -0.77 12.68 16 47 H 0.20 3.92 8.01 -2.91 -0.02 3.90 16 Total: -1.00 -71.93 392.07 0.46 -71.47 By element: Atomic # 1 Polarization: 38.84 SS G_CDS: -0.51 Total: 38.33 kcal Atomic # 6 Polarization: 19.21 SS G_CDS: 7.68 Total: 26.90 kcal Atomic # 7 Polarization: -131.88 SS G_CDS: -8.63 Total: -140.51 kcal Atomic # 8 Polarization: -39.79 SS G_CDS: -0.11 Total: -39.89 kcal Atomic # 14 Polarization: 41.68 SS G_CDS: 2.03 Total: 43.71 kcal Total: -71.93 0.46 -71.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087006522.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.706 kcal (2) G-P(sol) polarization free energy of solvation -71.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds