Wall clock time and date at job start Wed Apr 1 2020 05:17:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34946 * 126.03987 * 2 1 4 4 C 1.35320 * 107.74394 * 179.75129 * 3 2 1 5 5 C 1.39865 * 107.91986 * 0.40057 * 4 3 2 6 6 C 1.50706 * 125.89502 * 179.86590 * 5 4 3 7 7 C 1.50701 * 109.47048 * 124.70994 * 6 5 4 8 8 O 1.21279 * 120.00273 * 0.02562 * 7 6 5 9 9 N 1.34775 * 120.00020 * 179.97438 * 7 6 5 10 10 C 1.46496 * 120.00161 * 180.02562 * 9 7 6 11 11 H 1.08997 * 110.88880 * 37.34981 * 10 9 7 12 12 C 1.54635 * 110.96771 * 273.54662 * 10 9 7 13 13 C 1.51286 * 104.30817 * 266.74458 * 12 10 9 14 14 O 1.21280 * 124.93963 * 163.64332 * 13 12 10 15 15 N 1.34419 * 110.11798 * 343.67918 * 13 12 10 16 16 C 1.46504 * 124.34933 * 179.61509 * 15 13 12 17 17 C 1.53946 * 113.73985 * 36.69846 * 16 15 13 18 18 N 1.47577 * 86.11516 * 222.04546 * 17 16 15 19 19 C 1.36938 * 134.49297 * 204.63638 * 18 17 16 20 20 H 1.08004 * 119.99752 * 173.48433 * 19 18 17 21 21 C 1.38806 * 120.00170 * 353.48869 * 19 18 17 22 22 N 1.31616 * 119.99865 * 5.06557 * 21 19 18 23 23 Si 1.86804 * 120.00190 * 185.06321 * 21 19 18 24 24 H 1.48497 * 109.47214 * 94.98873 * 23 21 19 25 25 H 1.48501 * 109.46741 * 214.98916 * 23 21 19 26 26 H 1.48497 * 109.46999 * 334.98629 * 23 21 19 27 27 C 1.47582 * 91.01814 * 24.64343 * 18 17 16 28 28 C 1.46757 * 111.29927 * 359.59534 * 15 13 12 29 29 N 1.30833 * 108.20635 * 359.59353 * 5 4 3 30 30 H 1.09002 * 109.46934 * 269.97433 * 1 2 3 31 31 H 1.09006 * 109.46847 * 29.97277 * 1 2 3 32 32 H 1.09003 * 109.47521 * 149.97333 * 1 2 3 33 33 H 1.07998 * 126.12661 * 0.02562 * 3 2 1 34 34 H 1.08002 * 126.03260 * 180.27253 * 4 3 2 35 35 H 1.08998 * 109.47279 * 4.71314 * 6 5 4 36 36 H 1.09001 * 109.46671 * 244.70661 * 6 5 4 37 37 H 0.96999 * 120.00095 * 359.97438 * 9 7 6 38 38 H 1.08994 * 110.48748 * 148.00095 * 12 10 9 39 39 H 1.08995 * 110.48875 * 25.48597 * 12 10 9 40 40 H 1.08995 * 112.94424 * 168.43593 * 16 15 13 41 41 H 1.09001 * 113.76963 * 336.35109 * 17 16 15 42 42 H 1.08996 * 113.76735 * 107.74926 * 17 16 15 43 43 H 0.97004 * 120.00380 * 179.97438 * 22 21 19 44 44 H 1.08991 * 113.77132 * 221.05743 * 27 18 17 45 45 H 1.09005 * 113.76992 * 89.65353 * 27 18 17 46 46 H 1.08998 * 110.24939 * 136.01859 * 28 15 13 47 47 H 1.09010 * 110.24395 * 257.92470 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2590 1.0912 0.0000 4 6 3.5437 0.6664 0.0056 5 6 3.5346 -0.7322 -0.0002 6 6 4.7496 -1.6238 0.0003 7 6 4.6721 -2.5780 1.1641 8 8 3.7234 -2.5384 1.9186 9 7 5.6565 -3.4761 1.3659 10 6 5.5808 -4.4041 2.4969 11 1 4.5545 -4.7313 2.6632 12 6 6.1726 -3.7673 3.7757 13 6 7.6183 -4.2129 3.7808 14 8 8.4971 -3.7124 4.4502 15 7 7.7873 -5.2438 2.9348 16 6 9.0681 -5.9122 2.6917 17 6 9.9499 -6.0377 3.9473 18 7 11.0769 -5.6647 3.0705 19 6 12.4300 -5.8726 3.1059 20 1 13.0438 -5.5771 2.2679 21 6 13.0125 -6.4632 4.2188 22 7 12.2556 -6.9140 5.1966 23 14 14.8709 -6.6185 4.3286 24 1 15.4194 -5.4688 5.0919 25 1 15.2217 -7.8847 5.0206 26 1 15.4487 -6.6254 2.9607 27 6 10.1601 -4.9776 2.1402 28 6 6.5238 -5.6140 2.2865 29 7 2.2891 -1.1329 -0.0001 30 1 -0.3633 -0.0005 1.0277 31 1 -0.3633 0.8903 -0.5134 32 1 -0.3634 -0.8897 -0.5142 33 1 1.9282 2.1193 0.0004 34 1 4.4211 1.2962 0.0112 35 1 5.6482 -1.0134 0.0902 36 1 4.7859 -2.1889 -0.9311 37 1 6.4147 -3.5086 0.7618 38 1 5.6560 -4.1383 4.6609 39 1 6.1087 -2.6804 3.7254 40 1 8.9628 -6.8419 2.1325 41 1 9.7277 -5.2975 4.7160 42 1 10.0151 -7.0528 4.3387 43 1 12.6626 -7.3271 5.9742 44 1 10.3931 -5.1464 1.0890 45 1 9.9996 -3.9260 2.3782 46 1 6.6826 -5.7872 1.2221 47 1 6.1065 -6.5054 2.7549 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001094735579.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:17:03 Heat of formation + Delta-G solvation = 86.870821 kcal Electronic energy + Delta-G solvation = -29928.070089 eV Core-core repulsion = 25729.449967 eV Total energy + Delta-G solvation = -4198.620122 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.47298 -40.67425 -39.34655 -37.23390 -36.32410 -34.13505 -33.89777 -32.20081 -31.08267 -30.33322 -29.61889 -27.53079 -27.09738 -25.99029 -24.72197 -23.41902 -22.27511 -21.43567 -20.89500 -20.41710 -19.76804 -18.26897 -17.32308 -17.31165 -16.88931 -16.61115 -16.25668 -15.73040 -15.44212 -15.18240 -14.85648 -14.55706 -14.25883 -14.04194 -13.86209 -13.75501 -13.53918 -13.39821 -13.11303 -12.99670 -12.82782 -12.68674 -12.51100 -12.23341 -11.86335 -11.71271 -11.68776 -11.40327 -11.32369 -10.83370 -10.82347 -10.69859 -10.18495 -10.02729 -9.95634 -9.54525 -9.49012 -9.46138 -9.10007 -8.81124 -8.62019 -8.15288 -6.78550 -5.72549 -3.03616 1.64905 2.23487 2.42158 2.50323 2.96550 3.05132 3.29004 3.43288 3.48917 3.50031 4.11189 4.27850 4.44673 4.49626 4.52768 4.53137 4.73117 4.78698 4.81557 4.92199 5.03612 5.10073 5.10738 5.26027 5.39630 5.39872 5.45046 5.52857 5.56099 5.64884 5.69303 5.74937 5.76153 5.88710 6.27651 6.29646 6.35396 6.52564 6.60774 6.73770 6.90411 7.28259 7.29632 7.49299 7.53286 7.61118 7.68622 8.02397 8.06098 8.61409 9.09387 9.75653 10.65717 11.45235 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.028769 B = 0.001869 C = 0.001826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.026893 B =14980.798509 C =15326.538484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.377 5.377 3 C 0.049 3.951 4 C -0.265 4.265 5 C 0.082 3.918 6 C -0.060 4.060 7 C 0.519 3.481 8 O -0.521 6.521 9 N -0.723 5.723 10 C 0.137 3.863 11 H 0.113 0.887 12 C -0.166 4.166 13 C 0.512 3.488 14 O -0.509 6.509 15 N -0.609 5.609 16 C 0.098 3.902 17 C 0.154 3.846 18 N -0.604 5.604 19 C -0.223 4.223 20 H 0.081 0.919 21 C -0.006 4.006 22 N -0.916 5.916 23 Si 0.911 3.089 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.280 1.280 27 C 0.112 3.888 28 C 0.096 3.904 29 N -0.264 5.264 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.173 0.827 34 H 0.148 0.852 35 H 0.115 0.885 36 H 0.111 0.889 37 H 0.404 0.596 38 H 0.109 0.891 39 H 0.100 0.900 40 H 0.105 0.895 41 H 0.061 0.939 42 H 0.065 0.935 43 H 0.254 0.746 44 H 0.041 0.959 45 H 0.038 0.962 46 H 0.083 0.917 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.019 11.845 -14.144 31.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.160 5.160 3 C -0.096 4.096 4 C -0.294 4.294 5 C -0.085 4.085 6 C -0.101 4.101 7 C 0.304 3.696 8 O -0.395 6.395 9 N -0.376 5.376 10 C 0.031 3.969 11 H 0.131 0.869 12 C -0.208 4.208 13 C 0.299 3.701 14 O -0.384 6.384 15 N -0.345 5.345 16 C -0.005 4.005 17 C 0.028 3.972 18 N -0.331 5.331 19 C -0.351 4.351 20 H 0.098 0.902 21 C -0.203 4.203 22 N -0.562 5.562 23 Si 0.741 3.259 24 H -0.216 1.216 25 H -0.217 1.217 26 H -0.206 1.206 27 C -0.016 4.016 28 C -0.028 4.028 29 N -0.086 5.086 30 H 0.093 0.907 31 H 0.104 0.896 32 H 0.107 0.893 33 H 0.190 0.810 34 H 0.166 0.834 35 H 0.133 0.867 36 H 0.129 0.871 37 H 0.239 0.761 38 H 0.127 0.873 39 H 0.118 0.882 40 H 0.123 0.877 41 H 0.079 0.921 42 H 0.083 0.917 43 H 0.064 0.936 44 H 0.059 0.941 45 H 0.056 0.944 46 H 0.101 0.899 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -25.827 10.987 -13.106 30.976 hybrid contribution 1.847 0.767 -0.097 2.002 sum -23.980 11.754 -13.203 29.791 Atomic orbital electron populations 1.21838 0.74314 1.04295 1.03446 1.48529 1.06640 1.03874 1.56952 1.22496 0.91146 0.93467 1.02531 1.21366 0.97208 0.94077 1.16784 1.21496 0.92679 0.93388 1.00974 1.20029 0.95348 0.96141 0.98624 1.20376 0.82091 0.80877 0.86240 1.90755 1.32337 1.69681 1.46741 1.45990 1.24834 1.36306 1.30521 1.21861 1.00565 0.88838 0.85599 0.86908 1.22816 0.94945 1.03574 0.99477 1.20700 0.90134 0.79944 0.79316 1.90783 1.47296 1.57694 1.42631 1.48522 1.08570 1.33942 1.43446 1.24073 0.78648 0.95608 1.02161 1.22736 0.82187 1.00740 0.91540 1.45640 1.02214 1.60709 1.24520 1.18973 0.80556 1.34570 1.00965 0.90171 1.24841 0.97940 1.01310 0.96210 1.69846 1.33441 1.43800 1.09140 0.86124 0.85099 0.77160 0.77532 1.21608 1.21719 1.20550 1.22919 0.88661 0.95544 0.94452 1.22382 0.84509 0.96671 0.99285 1.77407 1.01155 1.07258 1.22792 0.90742 0.89570 0.89334 0.81016 0.83419 0.86692 0.87096 0.76090 0.87275 0.88194 0.87741 0.92143 0.91680 0.93624 0.94069 0.94440 0.89858 0.89701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.51 11.47 59.85 0.69 1.20 16 2 N -0.38 -3.52 4.01 -68.16 -0.27 -3.79 16 3 C 0.05 0.38 11.49 -17.22 -0.20 0.19 16 4 C -0.26 -2.37 10.72 -40.01 -0.43 -2.80 16 5 C 0.08 0.87 6.02 -82.41 -0.50 0.38 16 6 C -0.06 -0.47 6.28 -29.03 -0.18 -0.65 16 7 C 0.52 5.46 7.82 -10.99 -0.09 5.37 16 8 O -0.52 -7.65 15.30 5.56 0.09 -7.57 16 9 N -0.72 -6.33 5.16 -52.04 -0.27 -6.60 16 10 C 0.14 1.33 3.45 -66.11 -0.23 1.10 16 11 H 0.11 1.06 7.73 -51.93 -0.40 0.66 16 12 C -0.17 -2.07 6.57 -26.74 -0.18 -2.24 16 13 C 0.51 8.68 7.44 -10.86 -0.08 8.60 16 14 O -0.51 -11.46 14.64 5.56 0.08 -11.38 16 15 N -0.61 -9.10 3.15 -166.42 -0.52 -9.63 16 16 C 0.10 1.82 4.82 -70.15 -0.34 1.48 16 17 C 0.15 3.85 6.79 -2.98 -0.02 3.83 16 18 N -0.60 -16.21 3.70 -178.11 -0.66 -16.87 16 19 C -0.22 -6.48 10.69 -15.06 -0.16 -6.64 16 20 H 0.08 2.23 7.83 -52.48 -0.41 1.82 16 21 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 16 22 N -0.92 -28.24 11.51 55.49 0.64 -27.61 16 23 Si 0.91 22.74 29.56 -169.99 -5.02 17.71 16 24 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 25 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 26 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 27 C 0.11 2.37 8.45 -2.97 -0.03 2.34 16 28 C 0.10 0.93 6.97 -2.94 -0.02 0.91 16 29 N -0.26 -3.26 11.92 33.67 0.40 -2.86 16 30 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 32 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.17 0.67 8.06 -52.49 -0.42 0.24 16 34 H 0.15 0.99 8.06 -52.49 -0.42 0.57 16 35 H 0.11 0.63 8.12 -51.93 -0.42 0.21 16 36 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.40 2.77 8.58 -40.82 -0.35 2.42 16 38 H 0.11 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.10 1.31 8.09 -51.93 -0.42 0.89 16 40 H 0.10 1.75 8.14 -51.93 -0.42 1.33 16 41 H 0.06 1.68 5.58 -51.93 -0.29 1.39 16 42 H 0.06 1.76 7.35 -51.93 -0.38 1.38 16 43 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 44 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.04 0.85 7.41 -51.93 -0.38 0.46 16 46 H 0.08 0.65 8.04 -51.93 -0.42 0.24 16 47 H 0.08 0.72 8.14 -51.92 -0.42 0.30 16 LS Contribution 393.05 15.07 5.92 5.92 Total: -1.00 -41.43 393.05 -8.31 -49.74 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -6.84 Total: 0.14 kcal Atomic # 6 Polarization: 14.64 SS G_CDS: -1.85 Total: 12.79 kcal Atomic # 7 Polarization: -66.67 SS G_CDS: -0.69 Total: -67.36 kcal Atomic # 8 Polarization: -19.12 SS G_CDS: 0.17 Total: -18.95 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -5.02 Total: 17.71 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -41.43 -8.31 -49.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094735579.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.615 kcal (2) G-P(sol) polarization free energy of solvation -41.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.744 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds