Wall clock time and date at job start Wed Apr 1 2020 05:17:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34946 * 126.03987 * 2 1 4 4 C 1.35320 * 107.74394 * 179.75129 * 3 2 1 5 5 C 1.39865 * 107.91986 * 0.40057 * 4 3 2 6 6 C 1.50706 * 125.89502 * 179.86590 * 5 4 3 7 7 C 1.50701 * 109.47048 * 124.70994 * 6 5 4 8 8 O 1.21279 * 120.00273 * 0.02562 * 7 6 5 9 9 N 1.34775 * 120.00020 * 179.97438 * 7 6 5 10 10 C 1.46496 * 120.00161 * 180.02562 * 9 7 6 11 11 H 1.08997 * 110.88880 * 37.34981 * 10 9 7 12 12 C 1.54635 * 110.96771 * 273.54662 * 10 9 7 13 13 C 1.51286 * 104.30817 * 266.74458 * 12 10 9 14 14 O 1.21280 * 124.93963 * 163.64332 * 13 12 10 15 15 N 1.34419 * 110.11798 * 343.67918 * 13 12 10 16 16 C 1.46504 * 124.34933 * 179.61509 * 15 13 12 17 17 C 1.53946 * 113.73985 * 36.69846 * 16 15 13 18 18 N 1.47577 * 86.11516 * 222.04546 * 17 16 15 19 19 C 1.36938 * 134.49297 * 204.63638 * 18 17 16 20 20 H 1.08004 * 119.99752 * 173.48433 * 19 18 17 21 21 C 1.38806 * 120.00170 * 353.48869 * 19 18 17 22 22 N 1.31616 * 119.99865 * 5.06557 * 21 19 18 23 23 Si 1.86804 * 120.00190 * 185.06321 * 21 19 18 24 24 H 1.48497 * 109.47214 * 94.98873 * 23 21 19 25 25 H 1.48501 * 109.46741 * 214.98916 * 23 21 19 26 26 H 1.48497 * 109.46999 * 334.98629 * 23 21 19 27 27 C 1.47582 * 91.01814 * 24.64343 * 18 17 16 28 28 C 1.46757 * 111.29927 * 359.59534 * 15 13 12 29 29 N 1.30833 * 108.20635 * 359.59353 * 5 4 3 30 30 H 1.09002 * 109.46934 * 269.97433 * 1 2 3 31 31 H 1.09006 * 109.46847 * 29.97277 * 1 2 3 32 32 H 1.09003 * 109.47521 * 149.97333 * 1 2 3 33 33 H 1.07998 * 126.12661 * 0.02562 * 3 2 1 34 34 H 1.08002 * 126.03260 * 180.27253 * 4 3 2 35 35 H 1.08998 * 109.47279 * 4.71314 * 6 5 4 36 36 H 1.09001 * 109.46671 * 244.70661 * 6 5 4 37 37 H 0.96999 * 120.00095 * 359.97438 * 9 7 6 38 38 H 1.08994 * 110.48748 * 148.00095 * 12 10 9 39 39 H 1.08995 * 110.48875 * 25.48597 * 12 10 9 40 40 H 1.08995 * 112.94424 * 168.43593 * 16 15 13 41 41 H 1.09001 * 113.76963 * 336.35109 * 17 16 15 42 42 H 1.08996 * 113.76735 * 107.74926 * 17 16 15 43 43 H 0.97004 * 120.00380 * 179.97438 * 22 21 19 44 44 H 1.08991 * 113.77132 * 221.05743 * 27 18 17 45 45 H 1.09005 * 113.76992 * 89.65353 * 27 18 17 46 46 H 1.08998 * 110.24939 * 136.01859 * 28 15 13 47 47 H 1.09010 * 110.24395 * 257.92470 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2590 1.0912 0.0000 4 6 3.5437 0.6664 0.0056 5 6 3.5346 -0.7322 -0.0002 6 6 4.7496 -1.6238 0.0003 7 6 4.6721 -2.5780 1.1641 8 8 3.7234 -2.5384 1.9186 9 7 5.6565 -3.4761 1.3659 10 6 5.5808 -4.4041 2.4969 11 1 4.5545 -4.7313 2.6632 12 6 6.1726 -3.7673 3.7757 13 6 7.6183 -4.2129 3.7808 14 8 8.4971 -3.7124 4.4502 15 7 7.7873 -5.2438 2.9348 16 6 9.0681 -5.9122 2.6917 17 6 9.9499 -6.0377 3.9473 18 7 11.0769 -5.6647 3.0705 19 6 12.4300 -5.8726 3.1059 20 1 13.0438 -5.5771 2.2679 21 6 13.0125 -6.4632 4.2188 22 7 12.2556 -6.9140 5.1966 23 14 14.8709 -6.6185 4.3286 24 1 15.4194 -5.4688 5.0919 25 1 15.2217 -7.8847 5.0206 26 1 15.4487 -6.6254 2.9607 27 6 10.1601 -4.9776 2.1402 28 6 6.5238 -5.6140 2.2865 29 7 2.2891 -1.1329 -0.0001 30 1 -0.3633 -0.0005 1.0277 31 1 -0.3633 0.8903 -0.5134 32 1 -0.3634 -0.8897 -0.5142 33 1 1.9282 2.1193 0.0004 34 1 4.4211 1.2962 0.0112 35 1 5.6482 -1.0134 0.0902 36 1 4.7859 -2.1889 -0.9311 37 1 6.4147 -3.5086 0.7618 38 1 5.6560 -4.1383 4.6609 39 1 6.1087 -2.6804 3.7254 40 1 8.9628 -6.8419 2.1325 41 1 9.7277 -5.2975 4.7160 42 1 10.0151 -7.0528 4.3387 43 1 12.6626 -7.3271 5.9742 44 1 10.3931 -5.1464 1.0890 45 1 9.9996 -3.9260 2.3782 46 1 6.6826 -5.7872 1.2221 47 1 6.1065 -6.5054 2.7549 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001094735579.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:17:01 Heat of formation + Delta-G solvation = 54.539054 kcal Electronic energy + Delta-G solvation = -29929.472100 eV Core-core repulsion = 25729.449967 eV Total energy + Delta-G solvation = -4200.022133 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -42.12004 -41.83279 -40.35714 -38.90506 -37.58136 -35.07022 -34.72996 -34.10550 -32.06584 -31.11980 -30.42563 -29.15260 -28.31436 -26.59715 -26.56255 -25.21878 -23.14309 -22.11181 -22.01460 -21.71420 -20.48850 -19.71124 -18.77510 -18.10899 -17.96657 -17.68778 -17.58155 -16.88231 -16.43281 -16.35261 -16.08253 -15.84607 -15.52809 -15.14712 -14.95612 -14.66645 -14.55997 -14.46948 -14.23608 -14.09884 -13.68520 -13.47530 -13.43827 -13.30286 -13.17023 -13.10437 -12.85170 -12.78200 -12.74089 -12.64541 -12.42636 -11.99985 -11.84496 -11.50514 -11.48369 -11.05960 -10.88350 -10.59840 -10.14955 -10.05161 -9.54050 -9.41172 -8.91155 -7.93496 -5.26721 1.04227 1.42849 1.46819 1.55308 1.62839 1.69718 1.75373 1.80664 2.01229 2.33142 2.49089 3.25283 3.37322 3.48746 3.50470 3.57864 3.82100 3.87746 3.94616 4.02116 4.22565 4.26344 4.28909 4.44267 4.46999 4.55313 4.60644 4.64316 4.70677 4.71174 4.80782 4.83763 4.87525 4.90704 4.96257 4.97136 5.18170 5.20936 5.28231 5.49018 5.50762 5.75146 5.88000 5.91712 6.24672 6.28983 6.58790 6.85656 6.88777 7.27744 7.32024 7.58482 8.54782 9.24666 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.028769 B = 0.001869 C = 0.001826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.026893 B =14980.798509 C =15326.538484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.387 5.387 3 C 0.053 3.947 4 C -0.288 4.288 5 C 0.064 3.936 6 C -0.057 4.057 7 C 0.520 3.480 8 O -0.566 6.566 9 N -0.713 5.713 10 C 0.149 3.851 11 H 0.125 0.875 12 C -0.155 4.155 13 C 0.503 3.497 14 O -0.576 6.576 15 N -0.605 5.605 16 C 0.137 3.863 17 C 0.147 3.853 18 N -0.635 5.635 19 C -0.236 4.236 20 H 0.089 0.911 21 C -0.070 4.070 22 N -0.954 5.954 23 Si 0.981 3.019 24 H -0.293 1.293 25 H -0.292 1.292 26 H -0.259 1.259 27 C 0.115 3.885 28 C 0.098 3.902 29 N -0.315 5.315 30 H 0.076 0.924 31 H 0.120 0.880 32 H 0.085 0.915 33 H 0.210 0.790 34 H 0.165 0.835 35 H 0.139 0.861 36 H 0.135 0.865 37 H 0.416 0.584 38 H 0.121 0.879 39 H 0.092 0.908 40 H 0.138 0.862 41 H 0.024 0.976 42 H 0.034 0.966 43 H 0.248 0.752 44 H 0.073 0.927 45 H 0.023 0.977 46 H 0.117 0.883 47 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.120 12.219 -17.006 33.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.170 5.170 3 C -0.093 4.093 4 C -0.317 4.317 5 C -0.102 4.102 6 C -0.098 4.098 7 C 0.307 3.693 8 O -0.444 6.444 9 N -0.366 5.366 10 C 0.043 3.957 11 H 0.143 0.857 12 C -0.197 4.197 13 C 0.292 3.708 14 O -0.455 6.455 15 N -0.338 5.338 16 C 0.033 3.967 17 C 0.020 3.980 18 N -0.362 5.362 19 C -0.364 4.364 20 H 0.107 0.893 21 C -0.263 4.263 22 N -0.602 5.602 23 Si 0.809 3.191 24 H -0.221 1.221 25 H -0.218 1.218 26 H -0.183 1.183 27 C -0.011 4.011 28 C -0.024 4.024 29 N -0.139 5.139 30 H 0.095 0.905 31 H 0.138 0.862 32 H 0.104 0.896 33 H 0.227 0.773 34 H 0.182 0.818 35 H 0.157 0.843 36 H 0.152 0.848 37 H 0.254 0.746 38 H 0.139 0.861 39 H 0.110 0.890 40 H 0.156 0.844 41 H 0.042 0.958 42 H 0.053 0.947 43 H 0.057 0.943 44 H 0.091 0.909 45 H 0.040 0.960 46 H 0.135 0.865 47 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -26.970 11.349 -16.056 33.376 hybrid contribution 2.086 0.743 0.786 2.350 sum -24.884 12.092 -15.269 31.600 Atomic orbital electron populations 1.22126 0.72513 1.05854 1.04075 1.48884 1.07879 1.03658 1.56552 1.23155 0.90840 0.94711 1.00612 1.21738 0.98522 0.93815 1.17607 1.21994 0.92977 0.94621 1.00632 1.20165 0.95400 0.95892 0.98373 1.20817 0.81405 0.80875 0.86249 1.90739 1.34194 1.70977 1.48499 1.45921 1.24866 1.35649 1.30163 1.21790 1.00876 0.88539 0.84460 0.85727 1.22759 0.91858 1.03231 1.01835 1.21481 0.91246 0.79695 0.78362 1.90753 1.49700 1.59830 1.45217 1.48456 1.09240 1.32902 1.43187 1.23397 0.79466 0.96243 0.97589 1.22538 0.84423 0.97715 0.93287 1.46072 1.02316 1.61785 1.26028 1.19455 0.82253 1.33498 1.01217 0.89307 1.25768 1.02749 1.01699 0.96108 1.70060 1.35236 1.45228 1.09699 0.85017 0.79356 0.76503 0.78218 1.22064 1.21818 1.18345 1.23007 0.88227 0.94755 0.95081 1.22727 0.81513 0.97145 1.01013 1.77305 1.02306 1.09404 1.24847 0.90540 0.86207 0.89642 0.77313 0.81780 0.84306 0.84753 0.74637 0.86067 0.88990 0.84402 0.95805 0.94731 0.94325 0.90873 0.95963 0.86474 0.87313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.83 11.47 127.77 1.47 2.29 16 2 N -0.39 -6.82 4.01 -369.55 -1.48 -8.30 16 3 C 0.05 0.73 11.49 83.54 0.96 1.69 16 4 C -0.29 -4.73 10.72 21.99 0.24 -4.50 16 5 C 0.06 1.31 6.02 43.10 0.26 1.57 16 6 C -0.06 -0.79 6.28 29.10 0.18 -0.61 16 7 C 0.52 10.01 7.82 87.66 0.69 10.70 16 8 O -0.57 -16.23 15.30 -3.03 -0.05 -16.28 16 9 N -0.71 -10.47 5.16 -436.96 -2.26 -12.73 16 10 C 0.15 2.47 3.45 46.17 0.16 2.63 16 11 H 0.13 1.96 7.73 -2.39 -0.02 1.94 16 12 C -0.16 -3.69 6.57 30.59 0.20 -3.49 16 13 C 0.50 17.01 7.44 87.90 0.65 17.66 16 14 O -0.58 -27.16 14.64 -3.03 -0.04 -27.20 16 15 N -0.60 -16.90 3.15 -799.03 -2.52 -19.42 16 16 C 0.14 4.89 4.82 46.75 0.23 5.11 16 17 C 0.15 7.57 6.79 86.48 0.59 8.16 16 18 N -0.64 -34.49 3.70 -717.42 -2.65 -37.14 16 19 C -0.24 -13.83 10.69 84.03 0.90 -12.93 16 20 H 0.09 4.89 7.83 -2.91 -0.02 4.86 16 21 C -0.07 -4.21 5.50 84.86 0.47 -3.74 16 22 N -0.95 -61.03 11.51 21.65 0.25 -60.78 16 23 Si 0.98 47.48 29.56 68.60 2.03 49.51 16 24 H -0.29 -14.27 7.11 99.48 0.71 -13.56 16 25 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 26 H -0.26 -11.53 7.11 99.48 0.71 -10.83 16 27 C 0.12 4.76 8.45 86.48 0.73 5.50 16 28 C 0.10 1.51 6.97 86.96 0.61 2.11 16 29 N -0.32 -7.66 11.92 -47.38 -0.56 -8.23 16 30 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.12 0.18 8.14 -2.38 -0.02 0.16 16 32 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.21 0.98 8.06 -2.91 -0.02 0.95 16 34 H 0.16 1.92 8.06 -2.91 -0.02 1.89 16 35 H 0.14 1.17 8.12 -2.39 -0.02 1.16 16 36 H 0.13 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.42 4.20 8.58 -92.71 -0.80 3.40 16 38 H 0.12 2.61 8.14 -2.39 -0.02 2.59 16 39 H 0.09 2.38 8.09 -2.39 -0.02 2.36 16 40 H 0.14 4.11 8.14 -2.39 -0.02 4.09 16 41 H 0.02 1.42 5.58 -2.39 -0.01 1.41 16 42 H 0.03 1.95 7.35 -2.39 -0.02 1.94 16 43 H 0.25 15.35 8.31 -92.71 -0.77 14.58 16 44 H 0.07 2.57 8.14 -2.39 -0.02 2.56 16 45 H 0.02 1.01 7.41 -2.38 -0.02 0.99 16 46 H 0.12 1.15 8.04 -2.39 -0.02 1.13 16 47 H 0.11 1.33 8.14 -2.38 -0.02 1.31 16 Total: -1.00 -97.49 393.05 1.23 -96.26 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: 0.20 Total: 12.15 kcal Atomic # 6 Polarization: 23.83 SS G_CDS: 8.32 Total: 32.15 kcal Atomic # 7 Polarization: -137.36 SS G_CDS: -9.23 Total: -146.59 kcal Atomic # 8 Polarization: -43.39 SS G_CDS: -0.09 Total: -43.48 kcal Atomic # 14 Polarization: 47.48 SS G_CDS: 2.03 Total: 49.51 kcal Total: -97.49 1.23 -96.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094735579.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.796 kcal (2) G-P(sol) polarization free energy of solvation -97.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.257 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds