Wall clock time and date at job start Wed Apr 1 2020 05:17:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34947 * 126.03856 * 2 1 4 4 C 1.35320 * 107.74619 * 179.97438 * 3 2 1 5 5 C 1.39873 * 107.92054 * 359.97438 * 4 3 2 6 6 C 1.50697 * 125.89870 * 180.02562 * 5 4 3 7 7 C 1.50703 * 109.47086 * 124.99758 * 6 5 4 8 8 O 1.21276 * 119.99839 * 359.97438 * 7 6 5 9 9 N 1.34778 * 119.99670 * 179.97438 * 7 6 5 10 10 C 1.46495 * 119.99687 * 180.02562 * 9 7 6 11 11 H 1.09002 * 110.85631 * 328.78340 * 10 9 7 12 12 C 1.54619 * 110.97287 * 92.61840 * 10 9 7 13 13 C 1.51294 * 104.25793 * 142.69582 * 12 10 9 14 14 O 1.21284 * 124.94042 * 164.00880 * 13 12 10 15 15 N 1.34417 * 110.10966 * 344.15017 * 13 12 10 16 16 C 1.46503 * 124.34549 * 179.43693 * 15 13 12 17 17 C 1.53950 * 113.74146 * 320.95854 * 16 15 13 18 18 N 1.47805 * 86.03824 * 90.88395 * 17 16 15 19 19 C 1.36942 * 134.45487 * 204.64668 * 18 17 16 20 20 H 1.08002 * 119.99602 * 179.86453 * 19 18 17 21 21 C 1.38807 * 120.00184 * 359.86555 * 19 18 17 22 22 N 1.31617 * 119.99858 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00250 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47017 * 89.99413 * 23 21 19 25 25 H 1.48498 * 109.47093 * 210.00245 * 23 21 19 26 26 H 1.48508 * 109.46865 * 329.99904 * 23 21 19 27 27 C 1.47582 * 91.05413 * 24.54887 * 18 17 16 28 28 C 1.46755 * 111.30287 * 359.16618 * 15 13 12 29 29 N 1.30840 * 108.20065 * 0.26400 * 5 4 3 30 30 H 1.08999 * 109.46919 * 89.99849 * 1 2 3 31 31 H 1.08997 * 109.46785 * 210.00341 * 1 2 3 32 32 H 1.09003 * 109.46928 * 330.00111 * 1 2 3 33 33 H 1.07997 * 126.12512 * 359.95921 * 3 2 1 34 34 H 1.07994 * 126.04022 * 180.02562 * 4 3 2 35 35 H 1.09002 * 109.47226 * 4.99679 * 6 5 4 36 36 H 1.09000 * 109.47175 * 244.99823 * 6 5 4 37 37 H 0.97001 * 119.99888 * 359.97438 * 9 7 6 38 38 H 1.08997 * 110.49280 * 261.59376 * 12 10 9 39 39 H 1.09001 * 110.48540 * 24.11007 * 12 10 9 40 40 H 1.09002 * 112.94232 * 189.36528 * 16 15 13 41 41 H 1.08999 * 113.76704 * 205.15172 * 17 16 15 42 42 H 1.09002 * 113.76463 * 336.53966 * 17 16 15 43 43 H 0.97002 * 120.00155 * 180.02562 * 22 21 19 44 44 H 1.08999 * 113.77186 * 221.15323 * 27 18 17 45 45 H 1.09004 * 113.76624 * 89.74800 * 27 18 17 46 46 H 1.09005 * 110.24528 * 136.28714 * 28 15 13 47 47 H 1.08998 * 110.25010 * 258.19324 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2590 1.0912 0.0000 4 6 3.5438 0.6665 0.0006 5 6 3.5347 -0.7322 0.0015 6 6 4.7497 -1.6237 0.0030 7 6 4.6718 -2.5771 1.1675 8 8 3.7233 -2.5363 1.9222 9 7 5.6562 -3.4751 1.3702 10 6 5.5802 -4.4022 2.5019 11 1 5.0551 -3.9473 3.3417 12 6 4.9105 -5.7318 2.0841 13 6 5.6729 -6.7901 2.8507 14 8 5.2968 -7.9305 3.0212 15 7 6.8261 -6.2816 3.3178 16 6 7.7989 -7.0341 4.1139 17 6 7.1568 -7.9851 5.1402 18 7 7.2091 -9.0066 4.0732 19 6 6.5032 -10.1487 3.8034 20 1 6.7429 -10.7381 2.9307 21 6 5.4799 -10.5488 4.6516 22 7 5.1876 -9.8302 5.7148 23 14 4.5175 -12.1071 4.2840 24 1 5.1784 -13.2635 4.9407 25 1 3.1331 -11.9678 4.8027 26 1 4.4762 -12.3287 2.8161 27 6 8.3251 -8.3006 3.4143 28 6 6.9886 -4.8776 2.9226 29 7 2.2891 -1.1328 -0.0042 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8899 0.5139 32 1 -0.3633 0.8900 0.5138 33 1 1.9282 2.1193 -0.0006 34 1 4.4211 1.2962 0.0011 35 1 5.6482 -1.0132 0.0927 36 1 4.7863 -2.1895 -0.9280 37 1 6.4146 -3.5079 0.7663 38 1 3.8582 -5.7347 2.3682 39 1 5.0154 -5.8910 1.0109 40 1 8.5848 -6.4044 4.5308 41 1 7.7974 -8.2079 5.9935 42 1 6.1448 -7.7012 5.4291 43 1 4.4727 -10.1100 6.3078 44 1 8.2441 -8.2681 2.3278 45 1 9.3096 -8.6163 3.7597 46 1 7.3497 -4.2879 3.7653 47 1 7.6807 -4.7994 2.0842 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001094735580.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:17:07 Heat of formation + Delta-G solvation = 107.613327 kcal Electronic energy + Delta-G solvation = -30346.785909 eV Core-core repulsion = 26149.065250 eV Total energy + Delta-G solvation = -4197.720659 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.43957 -40.35123 -39.25689 -37.01514 -35.82279 -34.09637 -33.79145 -31.88602 -30.95279 -30.19019 -29.39251 -27.29291 -26.89550 -25.88213 -24.66178 -23.21751 -22.06424 -21.40245 -20.89957 -20.27463 -19.76973 -17.69065 -17.28296 -17.25172 -16.65291 -16.40013 -15.78979 -15.67325 -15.37865 -15.09242 -14.61406 -14.40147 -14.11278 -13.77742 -13.74814 -13.51090 -13.29320 -13.25335 -13.14261 -12.86375 -12.78380 -12.58030 -12.37977 -12.26135 -12.14540 -11.61201 -11.21663 -11.05955 -10.85179 -10.77419 -10.63144 -10.43319 -10.03283 -9.95678 -9.65045 -9.45589 -9.31511 -9.26764 -8.79457 -8.65642 -8.31589 -7.84791 -6.50595 -5.41561 -2.68726 1.68253 2.27201 2.45275 2.55761 3.03880 3.55342 3.59243 3.63414 3.65256 3.66496 4.14972 4.44958 4.51100 4.59474 4.71631 4.75871 4.82719 4.83197 4.92932 5.07324 5.10594 5.12387 5.23583 5.38761 5.39344 5.52476 5.53541 5.58568 5.75573 5.76226 5.81707 5.96355 6.02648 6.12601 6.36280 6.37948 6.41318 6.59773 6.63786 6.76790 7.00818 7.34195 7.39625 7.53116 7.61741 7.84571 7.97033 8.13997 8.29661 9.22738 9.35541 10.07448 10.90595 11.77686 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.017906 B = 0.002211 C = 0.002037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.341652 B =12658.961360 C =13743.706246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.376 5.376 3 C 0.049 3.951 4 C -0.267 4.267 5 C 0.080 3.920 6 C -0.058 4.058 7 C 0.516 3.484 8 O -0.517 6.517 9 N -0.722 5.722 10 C 0.136 3.864 11 H 0.109 0.891 12 C -0.167 4.167 13 C 0.491 3.509 14 O -0.421 6.421 15 N -0.607 5.607 16 C 0.104 3.896 17 C 0.156 3.844 18 N -0.588 5.588 19 C -0.183 4.183 20 H 0.069 0.931 21 C -0.001 4.001 22 N -0.923 5.923 23 Si 0.902 3.098 24 H -0.295 1.295 25 H -0.294 1.294 26 H -0.285 1.285 27 C 0.104 3.896 28 C 0.108 3.892 29 N -0.261 5.261 30 H 0.073 0.927 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.172 0.828 34 H 0.147 0.853 35 H 0.114 0.886 36 H 0.110 0.890 37 H 0.401 0.599 38 H 0.097 0.903 39 H 0.095 0.905 40 H 0.080 0.920 41 H 0.032 0.968 42 H 0.078 0.922 43 H 0.245 0.755 44 H 0.038 0.962 45 H 0.038 0.962 46 H 0.077 0.923 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.657 27.503 -13.447 30.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.159 5.159 3 C -0.097 4.097 4 C -0.296 4.296 5 C -0.087 4.087 6 C -0.100 4.100 7 C 0.301 3.699 8 O -0.391 6.391 9 N -0.375 5.375 10 C 0.031 3.969 11 H 0.127 0.873 12 C -0.209 4.209 13 C 0.273 3.727 14 O -0.286 6.286 15 N -0.345 5.345 16 C 0.000 4.000 17 C 0.030 3.970 18 N -0.314 5.314 19 C -0.311 4.311 20 H 0.087 0.913 21 C -0.196 4.196 22 N -0.572 5.572 23 Si 0.734 3.266 24 H -0.223 1.223 25 H -0.220 1.220 26 H -0.211 1.211 27 C -0.024 4.024 28 C -0.016 4.016 29 N -0.083 5.083 30 H 0.092 0.908 31 H 0.109 0.891 32 H 0.105 0.895 33 H 0.190 0.810 34 H 0.165 0.835 35 H 0.132 0.868 36 H 0.128 0.872 37 H 0.236 0.764 38 H 0.115 0.885 39 H 0.113 0.887 40 H 0.097 0.903 41 H 0.049 0.951 42 H 0.096 0.904 43 H 0.056 0.944 44 H 0.057 0.943 45 H 0.056 0.944 46 H 0.096 0.904 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.484 25.584 -12.716 28.608 hybrid contribution 0.347 0.027 -0.494 0.604 sum -1.137 25.611 -13.210 28.839 Atomic orbital electron populations 1.21856 0.74241 1.04662 1.03235 1.48553 1.06713 1.03851 1.56751 1.22496 0.91174 0.93470 1.02543 1.21326 0.97122 0.93990 1.17177 1.21507 0.92750 0.93354 1.01126 1.20014 0.95214 0.96066 0.98663 1.20381 0.82339 0.80807 0.86343 1.90778 1.31806 1.70082 1.46445 1.45907 1.24882 1.36131 1.30625 1.21757 0.96275 0.89129 0.89754 0.87282 1.22828 1.01900 0.94227 1.01908 1.20645 0.82035 0.89035 0.80960 1.91182 1.67905 1.16339 1.53208 1.47812 1.21401 1.10385 1.54908 1.22934 0.90557 0.92090 0.94455 1.22569 0.99661 0.84555 0.90208 1.45588 1.33700 1.26722 1.25406 1.18629 1.09702 0.96852 1.05924 0.91326 1.24510 0.98944 0.98596 0.97597 1.69771 1.32843 1.39077 1.15467 0.86259 0.79704 0.83323 0.77282 1.22332 1.22047 1.21086 1.22976 0.92462 0.90162 0.96765 1.22020 0.95584 0.83816 1.00222 1.77469 1.01196 1.07217 1.22447 0.90806 0.89113 0.89539 0.81050 0.83495 0.86811 0.87168 0.76404 0.88491 0.88669 0.90257 0.95064 0.90424 0.94445 0.94335 0.94442 0.90449 0.91731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.61 11.47 59.85 0.69 1.30 16 2 N -0.38 -3.79 4.01 -68.16 -0.27 -4.06 16 3 C 0.05 0.39 11.49 -17.22 -0.20 0.19 16 4 C -0.27 -2.33 10.72 -40.01 -0.43 -2.76 16 5 C 0.08 0.87 6.01 -82.40 -0.50 0.38 16 6 C -0.06 -0.45 6.28 -29.03 -0.18 -0.63 16 7 C 0.52 5.76 7.82 -10.98 -0.09 5.68 16 8 O -0.52 -8.44 15.21 5.56 0.08 -8.36 16 9 N -0.72 -6.50 5.15 -52.23 -0.27 -6.77 16 10 C 0.14 1.65 3.53 -66.30 -0.23 1.42 16 11 H 0.11 1.51 7.54 -51.93 -0.39 1.12 16 12 C -0.17 -2.61 6.59 -26.74 -0.18 -2.78 16 13 C 0.49 10.07 7.49 -10.86 -0.08 9.99 16 14 O -0.42 -11.36 13.05 5.55 0.07 -11.28 16 15 N -0.61 -10.46 3.16 -166.63 -0.53 -10.98 16 16 C 0.10 1.94 4.93 -70.14 -0.35 1.59 16 17 C 0.16 3.82 6.57 -2.84 -0.02 3.80 16 18 N -0.59 -15.78 2.18 -177.87 -0.39 -16.17 16 19 C -0.18 -5.52 8.88 -15.06 -0.13 -5.66 16 20 H 0.07 2.06 7.83 -52.49 -0.41 1.64 16 21 C 0.00 -0.04 5.36 -17.43 -0.09 -0.13 16 22 N -0.92 -29.41 11.39 55.49 0.63 -28.78 16 23 Si 0.90 24.42 29.55 -169.99 -5.02 19.39 16 24 H -0.30 -7.84 7.11 56.52 0.40 -7.44 16 25 H -0.29 -8.05 7.11 56.52 0.40 -7.65 16 26 H -0.28 -7.60 7.11 56.52 0.40 -7.20 16 27 C 0.10 2.19 8.51 -2.96 -0.03 2.16 16 28 C 0.11 1.24 7.07 -3.13 -0.02 1.22 16 29 N -0.26 -3.48 11.94 33.67 0.40 -3.07 16 30 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.17 0.67 8.06 -52.49 -0.42 0.25 16 34 H 0.15 0.88 8.06 -52.49 -0.42 0.45 16 35 H 0.11 0.48 8.12 -51.93 -0.42 0.05 16 36 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.40 2.19 8.43 -40.82 -0.34 1.85 16 38 H 0.10 1.66 8.14 -51.93 -0.42 1.24 16 39 H 0.10 1.35 8.08 -51.93 -0.42 0.93 16 40 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.08 2.19 6.78 -51.93 -0.35 1.83 16 43 H 0.25 7.69 8.31 -40.82 -0.34 7.35 16 44 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 46 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 47 H 0.06 0.58 7.80 -51.93 -0.41 0.17 16 LS Contribution 390.11 15.07 5.88 5.88 Total: -1.00 -43.29 390.11 -8.20 -51.49 By element: Atomic # 1 Polarization: 3.90 SS G_CDS: -6.95 Total: -3.05 kcal Atomic # 6 Polarization: 17.61 SS G_CDS: -1.83 Total: 15.77 kcal Atomic # 7 Polarization: -69.42 SS G_CDS: -0.42 Total: -69.84 kcal Atomic # 8 Polarization: -19.80 SS G_CDS: 0.16 Total: -19.64 kcal Atomic # 14 Polarization: 24.42 SS G_CDS: -5.02 Total: 19.39 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -43.29 -8.20 -51.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094735580.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.101 kcal (2) G-P(sol) polarization free energy of solvation -43.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds