Wall clock time and date at job start Wed Apr 1 2020 05:17:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34947 * 126.03856 * 2 1 4 4 C 1.35320 * 107.74619 * 179.97438 * 3 2 1 5 5 C 1.39873 * 107.92054 * 359.97438 * 4 3 2 6 6 C 1.50697 * 125.89870 * 180.02562 * 5 4 3 7 7 C 1.50703 * 109.47086 * 124.99758 * 6 5 4 8 8 O 1.21276 * 119.99839 * 359.97438 * 7 6 5 9 9 N 1.34778 * 119.99670 * 179.97438 * 7 6 5 10 10 C 1.46495 * 119.99687 * 180.02562 * 9 7 6 11 11 H 1.09002 * 110.85631 * 328.78340 * 10 9 7 12 12 C 1.54619 * 110.97287 * 92.61840 * 10 9 7 13 13 C 1.51294 * 104.25793 * 142.69582 * 12 10 9 14 14 O 1.21284 * 124.94042 * 164.00880 * 13 12 10 15 15 N 1.34417 * 110.10966 * 344.15017 * 13 12 10 16 16 C 1.46503 * 124.34549 * 179.43693 * 15 13 12 17 17 C 1.53950 * 113.74146 * 320.95854 * 16 15 13 18 18 N 1.47805 * 86.03824 * 90.88395 * 17 16 15 19 19 C 1.36942 * 134.45487 * 204.64668 * 18 17 16 20 20 H 1.08002 * 119.99602 * 179.86453 * 19 18 17 21 21 C 1.38807 * 120.00184 * 359.86555 * 19 18 17 22 22 N 1.31617 * 119.99858 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00250 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47017 * 89.99413 * 23 21 19 25 25 H 1.48498 * 109.47093 * 210.00245 * 23 21 19 26 26 H 1.48508 * 109.46865 * 329.99904 * 23 21 19 27 27 C 1.47582 * 91.05413 * 24.54887 * 18 17 16 28 28 C 1.46755 * 111.30287 * 359.16618 * 15 13 12 29 29 N 1.30840 * 108.20065 * 0.26400 * 5 4 3 30 30 H 1.08999 * 109.46919 * 89.99849 * 1 2 3 31 31 H 1.08997 * 109.46785 * 210.00341 * 1 2 3 32 32 H 1.09003 * 109.46928 * 330.00111 * 1 2 3 33 33 H 1.07997 * 126.12512 * 359.95921 * 3 2 1 34 34 H 1.07994 * 126.04022 * 180.02562 * 4 3 2 35 35 H 1.09002 * 109.47226 * 4.99679 * 6 5 4 36 36 H 1.09000 * 109.47175 * 244.99823 * 6 5 4 37 37 H 0.97001 * 119.99888 * 359.97438 * 9 7 6 38 38 H 1.08997 * 110.49280 * 261.59376 * 12 10 9 39 39 H 1.09001 * 110.48540 * 24.11007 * 12 10 9 40 40 H 1.09002 * 112.94232 * 189.36528 * 16 15 13 41 41 H 1.08999 * 113.76704 * 205.15172 * 17 16 15 42 42 H 1.09002 * 113.76463 * 336.53966 * 17 16 15 43 43 H 0.97002 * 120.00155 * 180.02562 * 22 21 19 44 44 H 1.08999 * 113.77186 * 221.15323 * 27 18 17 45 45 H 1.09004 * 113.76624 * 89.74800 * 27 18 17 46 46 H 1.09005 * 110.24528 * 136.28714 * 28 15 13 47 47 H 1.08998 * 110.25010 * 258.19324 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2590 1.0912 0.0000 4 6 3.5438 0.6665 0.0006 5 6 3.5347 -0.7322 0.0015 6 6 4.7497 -1.6237 0.0030 7 6 4.6718 -2.5771 1.1675 8 8 3.7233 -2.5363 1.9222 9 7 5.6562 -3.4751 1.3702 10 6 5.5802 -4.4022 2.5019 11 1 5.0551 -3.9473 3.3417 12 6 4.9105 -5.7318 2.0841 13 6 5.6729 -6.7901 2.8507 14 8 5.2968 -7.9305 3.0212 15 7 6.8261 -6.2816 3.3178 16 6 7.7989 -7.0341 4.1139 17 6 7.1568 -7.9851 5.1402 18 7 7.2091 -9.0066 4.0732 19 6 6.5032 -10.1487 3.8034 20 1 6.7429 -10.7381 2.9307 21 6 5.4799 -10.5488 4.6516 22 7 5.1876 -9.8302 5.7148 23 14 4.5175 -12.1071 4.2840 24 1 5.1784 -13.2635 4.9407 25 1 3.1331 -11.9678 4.8027 26 1 4.4762 -12.3287 2.8161 27 6 8.3251 -8.3006 3.4143 28 6 6.9886 -4.8776 2.9226 29 7 2.2891 -1.1328 -0.0042 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8899 0.5139 32 1 -0.3633 0.8900 0.5138 33 1 1.9282 2.1193 -0.0006 34 1 4.4211 1.2962 0.0011 35 1 5.6482 -1.0132 0.0927 36 1 4.7863 -2.1895 -0.9280 37 1 6.4146 -3.5079 0.7663 38 1 3.8582 -5.7347 2.3682 39 1 5.0154 -5.8910 1.0109 40 1 8.5848 -6.4044 4.5308 41 1 7.7974 -8.2079 5.9935 42 1 6.1448 -7.7012 5.4291 43 1 4.4727 -10.1100 6.3078 44 1 8.2441 -8.2681 2.3278 45 1 9.3096 -8.6163 3.7597 46 1 7.3497 -4.2879 3.7653 47 1 7.6807 -4.7994 2.0842 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001094735580.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:17:06 Heat of formation + Delta-G solvation = 73.437497 kcal Electronic energy + Delta-G solvation = -30348.267884 eV Core-core repulsion = 26149.065250 eV Total energy + Delta-G solvation = -4199.202635 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.09009 -41.64730 -40.36929 -38.65181 -37.30304 -35.04312 -34.73248 -33.92009 -31.88573 -31.04059 -30.36803 -29.11817 -28.12884 -26.54629 -26.46958 -25.11928 -23.04597 -22.09709 -22.00437 -21.75644 -20.50431 -19.25182 -18.68142 -18.15419 -17.87895 -17.47631 -17.11780 -16.82809 -16.56662 -16.29936 -16.03544 -15.65897 -15.42597 -15.16755 -14.82590 -14.59881 -14.50763 -14.47903 -14.24386 -14.05204 -13.77459 -13.60994 -13.40542 -13.20572 -13.10935 -12.93220 -12.88817 -12.75439 -12.64767 -12.46563 -12.20078 -11.89410 -11.58688 -11.45077 -11.35605 -10.93037 -10.78429 -10.43356 -10.15957 -9.91422 -9.40168 -9.34082 -8.62470 -7.71741 -4.95978 1.05918 1.37929 1.42371 1.48531 1.70740 1.72917 1.80382 1.99935 2.13126 2.43871 2.56364 3.44980 3.46618 3.55112 3.59729 3.66398 3.92033 3.93670 3.96505 4.07892 4.11518 4.25119 4.42503 4.47416 4.48383 4.61498 4.63025 4.67441 4.68697 4.72528 4.84356 4.88397 4.89787 4.94371 4.96896 4.99294 5.21067 5.26618 5.36500 5.49646 5.63009 5.77708 6.06638 6.16455 6.25780 6.50935 6.64438 6.88200 7.08075 7.37410 7.68676 7.83088 8.74920 9.47138 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.017906 B = 0.002211 C = 0.002037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.341652 B =12658.961360 C =13743.706246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.390 5.390 3 C 0.050 3.950 4 C -0.280 4.280 5 C 0.062 3.938 6 C -0.051 4.051 7 C 0.515 3.485 8 O -0.576 6.576 9 N -0.700 5.700 10 C 0.152 3.848 11 H 0.090 0.910 12 C -0.157 4.157 13 C 0.478 3.522 14 O -0.501 6.501 15 N -0.605 5.605 16 C 0.134 3.866 17 C 0.147 3.853 18 N -0.619 5.619 19 C -0.176 4.176 20 H 0.061 0.939 21 C -0.065 4.065 22 N -0.952 5.952 23 Si 0.957 3.043 24 H -0.285 1.285 25 H -0.304 1.304 26 H -0.280 1.280 27 C 0.105 3.895 28 C 0.112 3.888 29 N -0.327 5.327 30 H 0.087 0.913 31 H 0.072 0.928 32 H 0.116 0.884 33 H 0.211 0.789 34 H 0.175 0.825 35 H 0.158 0.842 36 H 0.131 0.869 37 H 0.424 0.576 38 H 0.070 0.930 39 H 0.112 0.888 40 H 0.141 0.859 41 H 0.029 0.971 42 H 0.030 0.970 43 H 0.234 0.766 44 H 0.039 0.961 45 H 0.066 0.934 46 H 0.107 0.893 47 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.632 30.966 -15.428 34.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.173 5.173 3 C -0.095 4.095 4 C -0.309 4.309 5 C -0.104 4.104 6 C -0.092 4.092 7 C 0.302 3.698 8 O -0.454 6.454 9 N -0.355 5.355 10 C 0.045 3.955 11 H 0.108 0.892 12 C -0.199 4.199 13 C 0.263 3.737 14 O -0.372 6.372 15 N -0.342 5.342 16 C 0.030 3.970 17 C 0.021 3.979 18 N -0.345 5.345 19 C -0.305 4.305 20 H 0.079 0.921 21 C -0.256 4.256 22 N -0.604 5.604 23 Si 0.788 3.212 24 H -0.212 1.212 25 H -0.231 1.231 26 H -0.206 1.206 27 C -0.020 4.020 28 C -0.010 4.010 29 N -0.150 5.150 30 H 0.106 0.894 31 H 0.091 0.909 32 H 0.135 0.865 33 H 0.228 0.772 34 H 0.192 0.808 35 H 0.175 0.825 36 H 0.149 0.851 37 H 0.264 0.736 38 H 0.088 0.912 39 H 0.130 0.870 40 H 0.158 0.842 41 H 0.047 0.953 42 H 0.048 0.952 43 H 0.043 0.957 44 H 0.057 0.943 45 H 0.084 0.916 46 H 0.126 0.874 47 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 1.594 29.112 -14.763 32.680 hybrid contribution -0.563 -0.925 0.049 1.084 sum 1.031 28.187 -14.714 31.813 Atomic orbital electron populations 1.22092 0.72868 1.05280 1.04351 1.48873 1.07799 1.03815 1.56783 1.23226 0.91021 0.94601 1.00697 1.21759 0.98499 0.93427 1.17252 1.22124 0.92904 0.94966 1.00441 1.20190 0.95812 0.95679 0.97545 1.21063 0.81391 0.80927 0.86427 1.90770 1.34157 1.71734 1.48720 1.45642 1.25295 1.34595 1.29927 1.21414 0.96374 0.87634 0.90114 0.89237 1.22704 1.00062 0.95046 1.02085 1.21413 0.82999 0.88774 0.80528 1.91134 1.69959 1.19797 1.56309 1.47937 1.20087 1.12664 1.53477 1.22623 0.90643 0.92122 0.91648 1.22525 0.97659 0.86450 0.91256 1.45901 1.35391 1.26240 1.26990 1.18827 1.09484 0.97405 1.04805 0.92124 1.25186 1.00540 1.01628 0.98252 1.69974 1.33348 1.40584 1.16504 0.85372 0.77944 0.80705 0.77160 1.21249 1.23093 1.20590 1.23207 0.91848 0.90319 0.96671 1.22373 0.95432 0.80192 1.03004 1.77373 1.02863 1.09732 1.25057 0.89444 0.90883 0.86526 0.77205 0.80801 0.82484 0.85119 0.73642 0.91169 0.87028 0.84179 0.95296 0.95194 0.95690 0.94301 0.91641 0.87448 0.87258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.10 11.47 127.77 1.47 2.57 16 2 N -0.39 -7.63 4.01 -369.56 -1.48 -9.12 16 3 C 0.05 0.70 11.49 83.54 0.96 1.66 16 4 C -0.28 -4.22 10.72 21.99 0.24 -3.98 16 5 C 0.06 1.27 6.01 43.10 0.26 1.53 16 6 C -0.05 -0.64 6.28 29.10 0.18 -0.46 16 7 C 0.51 10.51 7.82 87.66 0.69 11.19 16 8 O -0.58 -18.96 15.21 -3.02 -0.05 -19.01 16 9 N -0.70 -10.24 5.15 -437.55 -2.25 -12.49 16 10 C 0.15 3.35 3.53 46.05 0.16 3.51 16 11 H 0.09 2.42 7.54 -2.39 -0.02 2.40 16 12 C -0.16 -4.92 6.59 30.59 0.20 -4.72 16 13 C 0.48 19.84 7.49 87.90 0.66 20.50 16 14 O -0.50 -28.30 13.05 -3.04 -0.04 -28.34 16 15 N -0.61 -19.42 3.16 -799.68 -2.52 -21.94 16 16 C 0.13 4.61 4.93 46.75 0.23 4.84 16 17 C 0.15 7.28 6.57 86.44 0.57 7.85 16 18 N -0.62 -33.59 2.18 -716.67 -1.57 -35.16 16 19 C -0.18 -10.91 8.88 84.03 0.75 -10.16 16 20 H 0.06 3.73 7.83 -2.91 -0.02 3.71 16 21 C -0.06 -4.13 5.36 84.86 0.45 -3.68 16 22 N -0.95 -63.86 11.39 21.65 0.25 -63.61 16 23 Si 0.96 52.30 29.55 68.60 2.03 54.33 16 24 H -0.29 -14.90 7.11 99.48 0.71 -14.19 16 25 H -0.30 -16.89 7.11 99.48 0.71 -16.18 16 26 H -0.28 -14.86 7.11 99.48 0.71 -14.15 16 27 C 0.11 4.19 8.51 86.49 0.74 4.93 16 28 C 0.11 2.04 7.07 86.83 0.61 2.65 16 29 N -0.33 -8.78 11.94 -47.38 -0.57 -9.34 16 30 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.12 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.21 0.93 8.06 -2.91 -0.02 0.90 16 34 H 0.17 1.43 8.06 -2.91 -0.02 1.41 16 35 H 0.16 0.52 8.12 -2.39 -0.02 0.50 16 36 H 0.13 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.42 2.40 8.43 -92.71 -0.78 1.62 16 38 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 39 H 0.11 3.07 8.08 -2.39 -0.02 3.05 16 40 H 0.14 3.28 8.14 -2.39 -0.02 3.26 16 41 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 42 H 0.03 1.76 6.78 -2.39 -0.02 1.74 16 43 H 0.23 15.53 8.31 -92.71 -0.77 14.76 16 44 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 45 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 46 H 0.11 1.48 8.14 -2.38 -0.02 1.46 16 47 H 0.11 1.17 7.80 -2.39 -0.02 1.15 16 Total: -1.00 -106.02 390.11 2.17 -103.85 By element: Atomic # 1 Polarization: 2.40 SS G_CDS: 0.21 Total: 2.61 kcal Atomic # 6 Polarization: 30.06 SS G_CDS: 8.16 Total: 38.22 kcal Atomic # 7 Polarization: -143.52 SS G_CDS: -8.14 Total: -151.66 kcal Atomic # 8 Polarization: -47.27 SS G_CDS: -0.09 Total: -47.35 kcal Atomic # 14 Polarization: 52.30 SS G_CDS: 2.03 Total: 54.33 kcal Total: -106.02 2.17 -103.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094735580.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.289 kcal (2) G-P(sol) polarization free energy of solvation -106.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -103.851 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds