Wall clock time and date at job start Wed Apr 1 2020 05:36:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.35051 * 126.39317 * 2 1 4 4 N 1.30499 * 108.69816 * 179.97438 * 3 2 1 5 5 C 1.34132 * 109.25870 * 359.75743 * 4 3 2 6 6 C 1.34676 * 108.01820 * 0.39539 * 5 4 3 7 7 C 1.50695 * 126.59286 * 179.87366 * 6 5 4 8 8 C 1.50701 * 109.46881 * 84.68767 * 7 6 5 9 9 O 1.21278 * 120.00211 * 0.02562 * 8 7 6 10 10 N 1.34780 * 120.00030 * 180.02562 * 8 7 6 11 11 C 1.46497 * 120.00304 * 180.02562 * 10 8 7 12 12 H 1.09007 * 110.88267 * 37.35154 * 11 10 8 13 13 C 1.54628 * 110.96858 * 273.54927 * 11 10 8 14 14 C 1.51287 * 104.19329 * 217.08010 * 13 11 10 15 15 O 1.21276 * 124.94030 * 196.26915 * 14 13 11 16 16 N 1.34417 * 110.11654 * 16.24961 * 14 13 11 17 17 C 1.46491 * 124.35116 * 180.40585 * 16 14 13 18 18 C 1.53503 * 114.20774 * 60.02500 * 17 16 14 19 19 N 1.47066 * 87.98596 * 220.34520 * 18 17 16 20 20 C 1.36938 * 136.05640 * 207.07967 * 19 18 17 21 21 H 1.08004 * 119.99749 * 0.02562 * 20 19 18 22 22 C 1.38812 * 119.99984 * 180.02562 * 20 19 18 23 23 N 1.31618 * 119.99909 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99701 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47245 * 359.97438 * 24 22 20 26 26 H 1.48496 * 109.46754 * 120.00489 * 24 22 20 27 27 H 1.48495 * 109.46700 * 240.00164 * 24 22 20 28 28 C 1.47060 * 87.88579 * 27.11915 * 19 18 17 29 29 C 1.46767 * 111.29916 * 0.67193 * 16 14 13 30 30 H 1.09004 * 109.47274 * 269.99954 * 1 2 3 31 31 H 1.08999 * 109.47507 * 30.00264 * 1 2 3 32 32 H 1.09002 * 109.47223 * 150.00344 * 1 2 3 33 33 H 1.07997 * 125.64997 * 0.02562 * 3 2 1 34 34 H 1.07995 * 125.99304 * 180.24637 * 5 4 3 35 35 H 1.09000 * 109.47036 * 324.69000 * 7 6 5 36 36 H 1.08997 * 109.47223 * 204.68717 * 7 6 5 37 37 H 0.97004 * 119.99726 * 0.02562 * 10 8 7 38 38 H 1.09001 * 110.49270 * 98.40511 * 13 11 10 39 39 H 1.09004 * 110.59869 * 335.81135 * 13 11 10 40 40 H 1.08999 * 113.41382 * 193.22634 * 17 16 14 41 41 H 1.09000 * 113.46355 * 105.56471 * 18 17 16 42 42 H 1.09003 * 113.46309 * 335.12917 * 18 17 16 43 43 H 0.97003 * 119.99575 * 179.97438 * 23 22 20 44 44 H 1.09006 * 113.47077 * 87.66003 * 28 19 18 45 45 H 1.09003 * 113.47044 * 218.03568 * 28 19 18 46 46 H 1.09000 * 110.24091 * 101.71623 * 29 16 14 47 47 H 1.08992 * 110.24831 * 223.71664 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2662 1.0871 0.0000 4 7 3.5095 0.6905 0.0006 5 6 3.5461 -0.6503 0.0063 6 6 2.2772 -1.1018 0.0006 7 6 1.8364 -2.5428 0.0012 8 6 1.8079 -3.0587 1.4169 9 8 2.1148 -2.3280 2.3349 10 7 1.4412 -4.3321 1.6628 11 6 1.4129 -4.8336 3.0390 12 1 1.0619 -4.0634 3.7260 13 6 2.8024 -5.3624 3.4639 14 6 2.4934 -6.5693 4.3222 15 8 3.2781 -7.1050 5.0759 16 7 1.2223 -6.9612 4.1283 17 6 0.5939 -8.0954 4.8100 18 6 0.5565 -7.9684 6.3394 19 7 0.8880 -9.3993 6.4143 20 6 0.6749 -10.4152 7.3074 21 1 0.1357 -10.2246 8.2237 22 6 1.1519 -11.6901 7.0352 23 7 1.8094 -11.9223 5.9189 24 14 0.8606 -13.0761 8.2532 25 1 0.1024 -12.5583 9.4203 26 1 0.0821 -14.1567 7.5964 27 1 2.1663 -13.6149 8.7114 28 6 1.5498 -9.2586 5.1086 29 6 0.5469 -6.1108 3.1411 30 1 -0.3634 0.0000 1.0277 31 1 -0.3634 0.8899 -0.5139 32 1 -0.3634 -0.8900 -0.5138 33 1 1.9333 2.1145 0.0004 34 1 4.4369 -1.2609 0.0118 35 1 2.5351 -3.1367 -0.5880 36 1 0.8395 -2.6180 -0.4331 37 1 1.1961 -4.9167 0.9284 38 1 3.3367 -4.6093 4.0430 39 1 3.3851 -5.6548 2.5902 40 1 -0.3531 -8.3985 4.3635 41 1 -0.4325 -7.7308 6.7311 42 1 1.3361 -7.3206 6.7402 43 1 2.1430 -12.8131 5.7289 44 1 2.5940 -8.9545 5.1817 45 1 1.4063 -10.1186 4.4543 46 1 0.5005 -6.6164 2.1766 47 1 -0.4564 -5.8584 3.4842 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001094807859.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:36:17 Heat of formation + Delta-G solvation = 75.477688 kcal Electronic energy + Delta-G solvation = -29869.121741 eV Core-core repulsion = 25670.007576 eV Total energy + Delta-G solvation = -4199.114165 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.44099 -40.78167 -39.61912 -37.44902 -36.45520 -34.42813 -34.21636 -32.75332 -32.13601 -30.37913 -27.90335 -27.55072 -27.37513 -26.71457 -24.53862 -23.54757 -22.37399 -21.77154 -21.19282 -20.56085 -20.08543 -18.43140 -17.71341 -17.50798 -16.89218 -16.66326 -16.30726 -15.87150 -15.78182 -15.51093 -14.80459 -14.62591 -14.58609 -14.08445 -13.95654 -13.86289 -13.62605 -13.55178 -13.39378 -13.34411 -13.28789 -13.03313 -12.58367 -12.42320 -12.09201 -11.87433 -11.64825 -11.46456 -11.19474 -10.88682 -10.78556 -10.38037 -10.25168 -10.11203 -10.03425 -9.88762 -9.72496 -9.41212 -9.20044 -8.68318 -8.66056 -8.18174 -6.83179 -5.74419 -3.06702 1.60613 2.21146 2.38647 2.65281 2.88795 2.96088 3.26133 3.40763 3.46203 3.48515 4.05761 4.13928 4.21238 4.38720 4.40784 4.46366 4.49626 4.54443 4.59728 4.76110 4.82401 4.84808 4.92683 5.10237 5.23657 5.31267 5.36606 5.42499 5.51805 5.61312 5.62097 5.68491 5.83378 5.96562 6.05893 6.29127 6.41778 6.45695 6.56071 6.83266 6.85802 7.04634 7.25538 7.45610 7.56279 7.64024 7.77681 7.81699 7.98803 8.51997 9.05678 9.71951 10.65632 11.43197 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.038119 B = 0.001756 C = 0.001732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.372309 B =15939.599374 C =16161.315641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.455 5.455 3 C 0.184 3.816 4 N -0.494 5.494 5 C -0.005 4.005 6 C -0.013 4.013 7 C -0.063 4.063 8 C 0.514 3.486 9 O -0.520 6.520 10 N -0.721 5.721 11 C 0.137 3.863 12 H 0.110 0.890 13 C -0.167 4.167 14 C 0.515 3.485 15 O -0.506 6.506 16 N -0.603 5.603 17 C 0.092 3.908 18 C 0.111 3.889 19 N -0.604 5.604 20 C -0.215 4.215 21 H 0.083 0.917 22 C -0.009 4.009 23 N -0.918 5.918 24 Si 0.915 3.085 25 H -0.279 1.279 26 H -0.290 1.290 27 H -0.290 1.290 28 C 0.141 3.859 29 C 0.100 3.900 30 H 0.078 0.922 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.205 0.795 34 H 0.168 0.832 35 H 0.119 0.881 36 H 0.100 0.900 37 H 0.404 0.596 38 H 0.103 0.897 39 H 0.104 0.896 40 H 0.109 0.891 41 H 0.038 0.962 42 H 0.039 0.961 43 H 0.253 0.747 44 H 0.063 0.937 45 H 0.068 0.932 46 H 0.074 0.926 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.898 23.517 -19.782 31.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.139 5.139 3 C -0.098 4.098 4 N -0.211 5.211 5 C -0.154 4.154 6 C -0.127 4.127 7 C -0.104 4.104 8 C 0.299 3.701 9 O -0.394 6.394 10 N -0.375 5.375 11 C 0.031 3.969 12 H 0.127 0.873 13 C -0.208 4.208 14 C 0.301 3.699 15 O -0.381 6.381 16 N -0.338 5.338 17 C -0.011 4.011 18 C -0.017 4.017 19 N -0.329 5.329 20 C -0.342 4.342 21 H 0.100 0.900 22 C -0.205 4.205 23 N -0.564 5.564 24 Si 0.745 3.255 25 H -0.204 1.204 26 H -0.217 1.217 27 H -0.217 1.217 28 C 0.014 3.986 29 C -0.024 4.024 30 H 0.097 0.903 31 H 0.108 0.892 32 H 0.102 0.898 33 H 0.221 0.779 34 H 0.185 0.815 35 H 0.137 0.863 36 H 0.118 0.882 37 H 0.239 0.761 38 H 0.122 0.878 39 H 0.123 0.877 40 H 0.127 0.873 41 H 0.057 0.943 42 H 0.056 0.944 43 H 0.063 0.937 44 H 0.080 0.920 45 H 0.086 0.914 46 H 0.092 0.908 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -5.754 23.863 -18.506 30.741 hybrid contribution -1.024 -1.534 0.269 1.864 sum -6.778 22.329 -18.237 29.616 Atomic orbital electron populations 1.22053 0.76781 1.04531 1.03894 1.45208 1.07459 1.06666 1.54526 1.24914 0.85620 0.93320 1.05964 1.70286 1.19397 1.11956 1.19486 1.22022 0.95589 0.91126 1.06627 1.20352 0.91372 0.88314 1.12710 1.20007 1.04437 0.90867 0.95122 1.20538 0.76864 0.81505 0.91211 1.90785 1.46175 1.56378 1.46046 1.45936 1.70066 1.12803 1.08673 1.21830 0.95235 0.95918 0.83923 0.87251 1.22826 0.98370 0.97891 1.01734 1.20627 0.81906 0.84850 0.82502 1.90773 1.50973 1.58702 1.37623 1.48364 1.12471 1.31122 1.41881 1.23817 0.98621 0.86172 0.92494 1.22765 0.97893 0.88682 0.92353 1.45270 1.63870 1.02764 1.21044 1.18955 1.30257 0.86207 0.98829 0.89959 1.24827 1.00280 0.97473 0.97951 1.69855 1.41433 1.20804 1.24338 0.86001 0.77384 0.82044 0.80074 1.20410 1.21688 1.21684 1.22684 0.95639 0.92533 0.87701 1.22212 0.96866 0.89679 0.93682 0.90311 0.89239 0.89801 0.77889 0.81513 0.86261 0.88182 0.76114 0.87811 0.87739 0.87270 0.94336 0.94384 0.93686 0.91981 0.91421 0.90813 0.89698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.21 11.00 59.84 0.66 0.86 16 2 N -0.46 -3.21 3.15 -121.37 -0.38 -3.59 16 3 C 0.18 1.52 12.56 -90.37 -1.14 0.39 16 4 N -0.49 -5.69 11.25 -14.66 -0.16 -5.86 16 5 C -0.01 -0.05 11.79 -17.81 -0.21 -0.26 16 6 C -0.01 -0.11 5.45 -81.60 -0.44 -0.55 16 7 C -0.06 -0.30 6.04 -29.04 -0.18 -0.47 16 8 C 0.51 3.95 7.82 -10.98 -0.09 3.86 16 9 O -0.52 -6.58 15.78 5.56 0.09 -6.50 16 10 N -0.72 -4.18 5.18 -52.13 -0.27 -4.45 16 11 C 0.14 1.19 3.44 -66.21 -0.23 0.96 16 12 H 0.11 1.08 7.73 -51.92 -0.40 0.68 16 13 C -0.17 -1.94 6.58 -26.74 -0.18 -2.11 16 14 C 0.52 8.57 7.49 -10.86 -0.08 8.49 16 15 O -0.51 -11.22 14.49 5.56 0.08 -11.14 16 16 N -0.60 -8.96 3.17 -164.52 -0.52 -9.48 16 17 C 0.09 1.72 5.01 -67.81 -0.34 1.38 16 18 C 0.11 2.42 8.24 -8.51 -0.07 2.35 16 19 N -0.60 -16.32 3.78 -184.79 -0.70 -17.02 16 20 C -0.22 -6.26 10.75 -15.06 -0.16 -6.42 16 21 H 0.08 2.30 7.83 -52.48 -0.41 1.88 16 22 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 23 N -0.92 -28.11 11.51 55.49 0.64 -27.47 16 24 Si 0.91 22.63 29.55 -169.99 -5.02 17.60 16 25 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 26 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 27 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 28 C 0.14 3.50 6.80 -8.51 -0.06 3.45 16 29 C 0.10 0.90 7.06 -3.03 -0.02 0.88 16 30 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.09 0.07 8.14 -51.93 -0.42 -0.35 16 32 H 0.08 0.11 7.12 -51.93 -0.37 -0.26 16 33 H 0.20 0.90 8.06 -52.49 -0.42 0.48 16 34 H 0.17 1.49 8.06 -52.49 -0.42 1.07 16 35 H 0.12 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.10 0.19 7.09 -51.93 -0.37 -0.18 16 37 H 0.40 1.06 8.36 -40.82 -0.34 0.72 16 38 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 39 H 0.10 1.08 8.08 -51.93 -0.42 0.66 16 40 H 0.11 1.84 8.14 -51.93 -0.42 1.42 16 41 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.04 0.89 7.40 -51.93 -0.38 0.50 16 43 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 44 H 0.06 1.71 5.39 -51.93 -0.28 1.43 16 45 H 0.07 1.83 7.12 -51.93 -0.37 1.46 16 46 H 0.07 0.50 7.77 -51.93 -0.40 0.10 16 47 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 390.06 15.07 5.88 5.88 Total: -1.00 -41.81 390.06 -9.69 -51.50 By element: Atomic # 1 Polarization: 4.77 SS G_CDS: -6.69 Total: -1.92 kcal Atomic # 6 Polarization: 15.08 SS G_CDS: -2.62 Total: 12.45 kcal Atomic # 7 Polarization: -66.47 SS G_CDS: -1.40 Total: -67.87 kcal Atomic # 8 Polarization: -17.80 SS G_CDS: 0.17 Total: -17.64 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.60 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -41.81 -9.69 -51.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094807859.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.976 kcal (2) G-P(sol) polarization free energy of solvation -41.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds