Wall clock time and date at job start Wed Apr 1 2020 05:36:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.35051 * 126.39317 * 2 1 4 4 N 1.30499 * 108.69816 * 179.97438 * 3 2 1 5 5 C 1.34132 * 109.25870 * 359.75743 * 4 3 2 6 6 C 1.34676 * 108.01820 * 0.39539 * 5 4 3 7 7 C 1.50695 * 126.59286 * 179.87366 * 6 5 4 8 8 C 1.50701 * 109.46881 * 84.68767 * 7 6 5 9 9 O 1.21278 * 120.00211 * 0.02562 * 8 7 6 10 10 N 1.34780 * 120.00030 * 180.02562 * 8 7 6 11 11 C 1.46497 * 120.00304 * 180.02562 * 10 8 7 12 12 H 1.09007 * 110.88267 * 37.35154 * 11 10 8 13 13 C 1.54628 * 110.96858 * 273.54927 * 11 10 8 14 14 C 1.51287 * 104.19329 * 217.08010 * 13 11 10 15 15 O 1.21276 * 124.94030 * 196.26915 * 14 13 11 16 16 N 1.34417 * 110.11654 * 16.24961 * 14 13 11 17 17 C 1.46491 * 124.35116 * 180.40585 * 16 14 13 18 18 C 1.53503 * 114.20774 * 60.02500 * 17 16 14 19 19 N 1.47066 * 87.98596 * 220.34520 * 18 17 16 20 20 C 1.36938 * 136.05640 * 207.07967 * 19 18 17 21 21 H 1.08004 * 119.99749 * 0.02562 * 20 19 18 22 22 C 1.38812 * 119.99984 * 180.02562 * 20 19 18 23 23 N 1.31618 * 119.99909 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99701 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47245 * 359.97438 * 24 22 20 26 26 H 1.48496 * 109.46754 * 120.00489 * 24 22 20 27 27 H 1.48495 * 109.46700 * 240.00164 * 24 22 20 28 28 C 1.47060 * 87.88579 * 27.11915 * 19 18 17 29 29 C 1.46767 * 111.29916 * 0.67193 * 16 14 13 30 30 H 1.09004 * 109.47274 * 269.99954 * 1 2 3 31 31 H 1.08999 * 109.47507 * 30.00264 * 1 2 3 32 32 H 1.09002 * 109.47223 * 150.00344 * 1 2 3 33 33 H 1.07997 * 125.64997 * 0.02562 * 3 2 1 34 34 H 1.07995 * 125.99304 * 180.24637 * 5 4 3 35 35 H 1.09000 * 109.47036 * 324.69000 * 7 6 5 36 36 H 1.08997 * 109.47223 * 204.68717 * 7 6 5 37 37 H 0.97004 * 119.99726 * 0.02562 * 10 8 7 38 38 H 1.09001 * 110.49270 * 98.40511 * 13 11 10 39 39 H 1.09004 * 110.59869 * 335.81135 * 13 11 10 40 40 H 1.08999 * 113.41382 * 193.22634 * 17 16 14 41 41 H 1.09000 * 113.46355 * 105.56471 * 18 17 16 42 42 H 1.09003 * 113.46309 * 335.12917 * 18 17 16 43 43 H 0.97003 * 119.99575 * 179.97438 * 23 22 20 44 44 H 1.09006 * 113.47077 * 87.66003 * 28 19 18 45 45 H 1.09003 * 113.47044 * 218.03568 * 28 19 18 46 46 H 1.09000 * 110.24091 * 101.71623 * 29 16 14 47 47 H 1.08992 * 110.24831 * 223.71664 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2662 1.0871 0.0000 4 7 3.5095 0.6905 0.0006 5 6 3.5461 -0.6503 0.0063 6 6 2.2772 -1.1018 0.0006 7 6 1.8364 -2.5428 0.0012 8 6 1.8079 -3.0587 1.4169 9 8 2.1148 -2.3280 2.3349 10 7 1.4412 -4.3321 1.6628 11 6 1.4129 -4.8336 3.0390 12 1 1.0619 -4.0634 3.7260 13 6 2.8024 -5.3624 3.4639 14 6 2.4934 -6.5693 4.3222 15 8 3.2781 -7.1050 5.0759 16 7 1.2223 -6.9612 4.1283 17 6 0.5939 -8.0954 4.8100 18 6 0.5565 -7.9684 6.3394 19 7 0.8880 -9.3993 6.4143 20 6 0.6749 -10.4152 7.3074 21 1 0.1357 -10.2246 8.2237 22 6 1.1519 -11.6901 7.0352 23 7 1.8094 -11.9223 5.9189 24 14 0.8606 -13.0761 8.2532 25 1 0.1024 -12.5583 9.4203 26 1 0.0821 -14.1567 7.5964 27 1 2.1663 -13.6149 8.7114 28 6 1.5498 -9.2586 5.1086 29 6 0.5469 -6.1108 3.1411 30 1 -0.3634 0.0000 1.0277 31 1 -0.3634 0.8899 -0.5139 32 1 -0.3634 -0.8900 -0.5138 33 1 1.9333 2.1145 0.0004 34 1 4.4369 -1.2609 0.0118 35 1 2.5351 -3.1367 -0.5880 36 1 0.8395 -2.6180 -0.4331 37 1 1.1961 -4.9167 0.9284 38 1 3.3367 -4.6093 4.0430 39 1 3.3851 -5.6548 2.5902 40 1 -0.3531 -8.3985 4.3635 41 1 -0.4325 -7.7308 6.7311 42 1 1.3361 -7.3206 6.7402 43 1 2.1430 -12.8131 5.7289 44 1 2.5940 -8.9545 5.1817 45 1 1.4063 -10.1186 4.4543 46 1 0.5005 -6.6164 2.1766 47 1 -0.4564 -5.8584 3.4842 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001094807859.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:36:16 Heat of formation + Delta-G solvation = 43.551263 kcal Electronic energy + Delta-G solvation = -29870.506174 eV Core-core repulsion = 25670.007576 eV Total energy + Delta-G solvation = -4200.498599 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.99003 -41.92650 -40.49965 -39.09366 -37.64624 -35.24421 -34.91412 -34.22334 -33.20224 -31.56292 -29.27418 -28.70893 -27.75954 -27.54597 -26.42469 -25.32493 -23.17724 -22.35629 -22.20841 -21.85593 -20.68011 -19.84847 -18.81334 -18.29712 -18.05282 -17.75352 -17.47719 -16.98376 -16.53409 -16.34145 -16.28883 -15.87435 -15.59324 -15.26406 -15.13868 -14.74303 -14.60905 -14.55707 -14.40546 -14.04564 -13.93831 -13.69603 -13.63245 -13.49712 -13.29612 -13.23388 -12.95420 -12.85445 -12.74046 -12.62861 -12.24861 -12.02860 -11.93926 -11.36393 -11.16758 -11.01324 -10.88505 -10.65511 -10.42648 -10.08897 -9.56334 -9.26175 -8.96136 -7.94849 -5.30008 1.05125 1.42712 1.45775 1.55550 1.56322 1.66214 1.84214 2.00182 2.17345 2.36909 2.47446 3.25634 3.33207 3.49358 3.53516 3.62191 3.72718 3.85327 3.94719 4.03428 4.05038 4.09594 4.19915 4.23694 4.41285 4.52659 4.53837 4.58608 4.65683 4.66924 4.74300 4.78900 4.82070 4.88189 4.90274 4.92054 5.18187 5.22029 5.43715 5.44709 5.45183 5.83681 5.84458 5.87617 6.24156 6.35748 6.59292 6.85362 7.18283 7.20905 7.30969 7.54242 8.54781 9.23181 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.038119 B = 0.001756 C = 0.001732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.372309 B =15939.599374 C =16161.315641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.455 5.455 3 C 0.175 3.825 4 N -0.543 5.543 5 C -0.047 4.047 6 C -0.009 4.009 7 C -0.056 4.056 8 C 0.517 3.483 9 O -0.574 6.574 10 N -0.700 5.700 11 C 0.153 3.847 12 H 0.102 0.898 13 C -0.155 4.155 14 C 0.502 3.498 15 O -0.574 6.574 16 N -0.602 5.602 17 C 0.134 3.866 18 C 0.110 3.890 19 N -0.635 5.635 20 C -0.232 4.232 21 H 0.088 0.912 22 C -0.070 4.070 23 N -0.954 5.954 24 Si 0.987 3.013 25 H -0.262 1.262 26 H -0.284 1.284 27 H -0.296 1.296 28 C 0.135 3.865 29 C 0.101 3.899 30 H 0.075 0.925 31 H 0.112 0.888 32 H 0.107 0.893 33 H 0.233 0.767 34 H 0.164 0.836 35 H 0.146 0.854 36 H 0.140 0.860 37 H 0.425 0.575 38 H 0.092 0.908 39 H 0.122 0.878 40 H 0.143 0.857 41 H 0.065 0.935 42 H 0.018 0.982 43 H 0.249 0.751 44 H 0.028 0.972 45 H 0.038 0.962 46 H 0.110 0.890 47 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.358 24.323 -21.830 34.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.137 5.137 3 C -0.107 4.107 4 N -0.262 5.262 5 C -0.195 4.195 6 C -0.125 4.125 7 C -0.096 4.096 8 C 0.304 3.696 9 O -0.452 6.452 10 N -0.355 5.355 11 C 0.046 3.954 12 H 0.120 0.880 13 C -0.196 4.196 14 C 0.291 3.709 15 O -0.453 6.453 16 N -0.335 5.335 17 C 0.030 3.970 18 C -0.016 4.016 19 N -0.361 5.361 20 C -0.360 4.360 21 H 0.106 0.894 22 C -0.263 4.263 23 N -0.602 5.602 24 Si 0.815 3.185 25 H -0.186 1.186 26 H -0.210 1.210 27 H -0.223 1.223 28 C 0.009 3.991 29 C -0.021 4.021 30 H 0.093 0.907 31 H 0.130 0.870 32 H 0.125 0.875 33 H 0.249 0.751 34 H 0.182 0.818 35 H 0.164 0.836 36 H 0.158 0.842 37 H 0.264 0.736 38 H 0.110 0.890 39 H 0.140 0.860 40 H 0.161 0.839 41 H 0.083 0.917 42 H 0.036 0.964 43 H 0.058 0.942 44 H 0.046 0.954 45 H 0.057 0.943 46 H 0.128 0.872 47 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -9.297 24.710 -20.628 33.504 hybrid contribution 0.082 -1.682 0.895 1.907 sum -9.215 23.027 -19.733 31.695 Atomic orbital electron populations 1.22380 0.74187 1.06937 1.04365 1.45479 1.09001 1.05945 1.53253 1.25491 0.85188 0.94908 1.05130 1.70191 1.21675 1.12959 1.21379 1.22241 0.97002 0.91232 1.09032 1.20771 0.90848 0.90100 1.10805 1.20144 1.07366 0.88730 0.93367 1.21026 0.75455 0.81313 0.91799 1.90787 1.48637 1.57892 1.47910 1.45684 1.69190 1.12586 1.08036 1.21523 0.92764 0.95657 0.85409 0.88023 1.22755 1.00597 0.95153 1.01095 1.21526 0.81852 0.85555 0.81972 1.90739 1.53010 1.60971 1.40611 1.48338 1.12371 1.30492 1.42320 1.23146 0.97635 0.84851 0.91330 1.22833 0.98183 0.85686 0.94947 1.45695 1.64186 1.04642 1.21606 1.19403 1.29874 0.87227 0.99512 0.89402 1.25778 1.00430 1.00124 0.99939 1.70065 1.42799 1.21026 1.26301 0.84887 0.76951 0.78560 0.78151 1.18625 1.21032 1.22321 1.22532 0.95422 0.94083 0.87082 1.22589 0.97241 0.88615 0.93658 0.90679 0.86959 0.87481 0.75073 0.81843 0.83615 0.84227 0.73561 0.88967 0.86023 0.83912 0.91732 0.96432 0.94188 0.95388 0.94346 0.87169 0.86881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.15 11.00 127.77 1.41 1.55 16 2 N -0.45 -5.45 3.15 -537.89 -1.70 -7.15 16 3 C 0.18 2.76 12.56 180.26 2.26 5.02 16 4 N -0.54 -12.83 11.25 -200.30 -2.25 -15.09 16 5 C -0.05 -0.99 11.79 83.52 0.98 -0.01 16 6 C -0.01 -0.13 5.45 40.95 0.22 0.09 16 7 C -0.06 -0.30 6.04 29.10 0.18 -0.13 16 8 C 0.52 6.27 7.82 87.66 0.69 6.96 16 9 O -0.57 -13.74 15.78 -3.02 -0.05 -13.79 16 10 N -0.70 -5.03 5.18 -437.25 -2.27 -7.30 16 11 C 0.15 2.15 3.44 46.11 0.16 2.31 16 12 H 0.10 1.73 7.73 -2.38 -0.02 1.71 16 13 C -0.15 -3.41 6.58 30.59 0.20 -3.21 16 14 C 0.50 16.81 7.49 87.90 0.66 17.46 16 15 O -0.57 -26.95 14.49 -3.02 -0.04 -27.00 16 16 N -0.60 -16.72 3.17 -793.00 -2.52 -19.24 16 17 C 0.13 4.86 5.01 45.47 0.23 5.09 16 18 C 0.11 4.79 8.24 83.18 0.69 5.47 16 19 N -0.64 -35.05 3.78 -738.54 -2.79 -37.84 16 20 C -0.23 -13.72 10.75 84.03 0.90 -12.82 16 21 H 0.09 4.92 7.83 -2.91 -0.02 4.89 16 22 C -0.07 -4.15 5.50 84.86 0.47 -3.69 16 23 N -0.95 -60.35 11.51 21.65 0.25 -60.10 16 24 Si 0.99 47.18 29.55 68.60 2.03 49.21 16 25 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 26 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 27 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 28 C 0.14 6.98 6.80 83.18 0.57 7.54 16 29 C 0.10 1.34 7.06 86.89 0.61 1.96 16 30 H 0.07 0.28 8.14 -2.39 -0.02 0.26 16 31 H 0.11 -0.24 8.14 -2.39 -0.02 -0.26 16 32 H 0.11 -0.24 7.12 -2.39 -0.02 -0.26 16 33 H 0.23 1.75 8.06 -2.91 -0.02 1.73 16 34 H 0.16 3.13 8.06 -2.91 -0.02 3.11 16 35 H 0.15 0.08 8.14 -2.39 -0.02 0.07 16 36 H 0.14 -0.31 7.09 -2.39 -0.02 -0.33 16 37 H 0.43 -0.29 8.36 -92.71 -0.78 -1.07 16 38 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 39 H 0.12 2.27 8.08 -2.38 -0.02 2.25 16 40 H 0.14 4.30 8.14 -2.39 -0.02 4.28 16 41 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 42 H 0.02 0.85 7.40 -2.39 -0.02 0.83 16 43 H 0.25 15.16 8.31 -92.71 -0.77 14.39 16 44 H 0.03 1.66 5.39 -2.38 -0.01 1.64 16 45 H 0.04 2.16 7.12 -2.39 -0.02 2.15 16 46 H 0.11 0.80 7.77 -2.39 -0.02 0.78 16 47 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -100.88 390.06 1.11 -99.77 By element: Atomic # 1 Polarization: 4.66 SS G_CDS: 0.23 Total: 4.90 kcal Atomic # 6 Polarization: 23.40 SS G_CDS: 10.22 Total: 33.62 kcal Atomic # 7 Polarization: -135.43 SS G_CDS: -11.28 Total: -146.71 kcal Atomic # 8 Polarization: -40.70 SS G_CDS: -0.09 Total: -40.79 kcal Atomic # 14 Polarization: 47.18 SS G_CDS: 2.03 Total: 49.21 kcal Total: -100.88 1.11 -99.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094807859.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.325 kcal (2) G-P(sol) polarization free energy of solvation -100.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds