Wall clock time and date at job start Wed Apr 1 2020 05:36:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.35047 * 126.39862 * 2 1 4 4 N 1.30498 * 108.70308 * 180.02562 * 3 2 1 5 5 C 1.34126 * 109.25436 * 359.75540 * 4 3 2 6 6 C 1.34666 * 108.02102 * 0.39863 * 5 4 3 7 7 C 1.50708 * 126.59238 * 179.87594 * 6 5 4 8 8 C 1.50704 * 109.46975 * 84.68499 * 7 6 5 9 9 O 1.21278 * 120.00158 * 0.02562 * 8 7 6 10 10 N 1.34775 * 119.99461 * 180.02562 * 8 7 6 11 11 C 1.46501 * 119.99694 * 180.02562 * 10 8 7 12 12 H 1.09001 * 110.85453 * 328.78965 * 11 10 8 13 13 C 1.54618 * 110.97167 * 92.62243 * 11 10 8 14 14 C 1.51284 * 104.19819 * 142.91571 * 13 11 10 15 15 O 1.21284 * 124.94089 * 163.77039 * 14 13 11 16 16 N 1.34413 * 110.11346 * 343.74895 * 14 13 11 17 17 C 1.46500 * 124.34722 * 179.85759 * 16 14 13 18 18 C 1.53948 * 113.74363 * 38.44297 * 17 16 14 19 19 N 1.47815 * 86.03641 * 222.08378 * 18 17 16 20 20 C 1.36933 * 134.45815 * 204.64224 * 19 18 17 21 21 H 1.08000 * 119.99861 * 179.86496 * 20 19 18 22 22 C 1.38814 * 119.99844 * 359.86608 * 20 19 18 23 23 N 1.31624 * 119.99899 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 120.00096 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.46609 * 90.00071 * 24 22 20 26 26 H 1.48497 * 109.47004 * 210.00105 * 24 22 20 27 27 H 1.48496 * 109.47057 * 330.00066 * 24 22 20 28 28 C 1.47582 * 91.05036 * 24.54595 * 19 18 17 29 29 C 1.46766 * 111.30232 * 359.58991 * 16 14 13 30 30 H 1.09005 * 109.47153 * 269.99431 * 1 2 3 31 31 H 1.08994 * 109.47265 * 29.99850 * 1 2 3 32 32 H 1.09002 * 109.47162 * 149.99890 * 1 2 3 33 33 H 1.07999 * 125.64816 * 359.97438 * 3 2 1 34 34 H 1.08005 * 125.99114 * 180.25136 * 5 4 3 35 35 H 1.09005 * 109.46488 * 324.68891 * 7 6 5 36 36 H 1.08994 * 109.47002 * 204.68970 * 7 6 5 37 37 H 0.97003 * 120.00312 * 0.02562 * 10 8 7 38 38 H 1.09008 * 110.48943 * 261.59416 * 13 11 10 39 39 H 1.09000 * 110.48637 * 24.10465 * 13 11 10 40 40 H 1.09006 * 112.94410 * 170.03414 * 17 16 14 41 41 H 1.09000 * 113.76675 * 336.34733 * 18 17 16 42 42 H 1.08998 * 113.77164 * 107.74563 * 18 17 16 43 43 H 0.96998 * 119.99500 * 179.97438 * 23 22 20 44 44 H 1.09001 * 113.77094 * 221.14962 * 28 19 18 45 45 H 1.09002 * 113.76745 * 89.75623 * 28 19 18 46 46 H 1.09008 * 110.24439 * 136.01733 * 29 16 14 47 47 H 1.08998 * 110.24767 * 257.92806 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2663 1.0870 0.0000 4 7 3.5095 0.6903 -0.0006 5 6 3.5460 -0.6504 0.0045 6 6 2.2773 -1.1017 -0.0006 7 6 1.8364 -2.5429 -0.0004 8 6 1.8088 -3.0595 1.4151 9 8 2.1164 -2.3293 2.3333 10 7 1.4423 -4.3330 1.6605 11 6 1.4149 -4.8351 3.0365 12 1 2.1747 -4.3435 3.6441 13 6 0.0105 -4.6641 3.6602 14 6 -0.1719 -5.9030 4.5090 15 8 -1.0085 -6.0330 5.3775 16 7 0.7278 -6.8388 4.1604 17 6 0.8312 -8.1596 4.7857 18 6 -0.5301 -8.7903 5.1307 19 7 0.0996 -9.2046 6.4022 20 6 -0.1347 -10.2052 7.3072 21 1 0.4896 -10.2977 8.1836 22 6 -1.1746 -11.1007 7.0980 23 7 -1.9357 -10.9876 6.0301 24 14 -1.4938 -12.4661 8.3322 25 1 -2.4455 -11.9861 9.3662 26 1 -2.0741 -13.6402 7.6322 27 1 -0.2157 -12.8574 8.9791 28 6 1.0832 -8.1088 6.3035 29 6 1.5891 -6.3697 3.0686 30 1 -0.3634 -0.0001 1.0277 31 1 -0.3633 0.8899 -0.5138 32 1 -0.3633 -0.8900 -0.5139 33 1 1.9334 2.1144 -0.0004 34 1 4.4369 -1.2611 0.0092 35 1 2.5348 -3.1365 -0.5903 36 1 0.8392 -2.6178 -0.4340 37 1 1.1966 -4.9172 0.9261 38 1 -0.0252 -3.7682 4.2802 39 1 -0.7500 -4.6180 2.8807 40 1 1.5033 -8.8312 4.2515 41 1 -1.3326 -8.0631 5.2543 42 1 -0.8051 -9.6232 4.4835 43 1 -2.6621 -11.6135 5.8838 44 1 2.0940 -8.3985 6.5910 45 1 0.7557 -7.1809 6.7724 46 1 2.6288 -6.6272 3.2711 47 1 1.2703 -6.8067 2.1223 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001094807861.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:36:22 Heat of formation + Delta-G solvation = 70.473416 kcal Electronic energy + Delta-G solvation = -29904.314384 eV Core-core repulsion = 25704.983217 eV Total energy + Delta-G solvation = -4199.331167 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.44069 -40.76212 -39.59907 -37.28598 -36.44975 -34.41938 -34.20251 -32.75045 -32.10466 -30.36021 -27.90255 -27.51245 -27.35782 -26.69224 -24.74585 -23.46698 -22.36050 -21.77491 -21.20797 -20.50877 -20.08850 -18.36579 -17.74226 -17.49466 -16.89293 -16.64864 -16.28904 -15.86466 -15.81603 -15.47372 -14.75908 -14.70078 -14.52949 -14.09589 -13.98401 -13.83661 -13.64816 -13.54665 -13.42434 -13.31506 -13.24239 -12.98777 -12.61677 -12.42968 -12.07559 -11.86938 -11.62851 -11.42042 -11.19408 -10.86181 -10.70929 -10.38548 -10.26086 -10.19246 -10.00270 -9.88864 -9.73836 -9.50535 -9.20018 -8.68538 -8.66341 -8.21842 -6.82786 -5.73532 -3.05276 1.60994 2.20645 2.39512 2.65705 2.88266 2.96015 3.27185 3.41894 3.46898 3.47977 4.05897 4.17406 4.23678 4.35354 4.41845 4.49300 4.50457 4.53145 4.61567 4.77384 4.83550 4.84004 4.95391 5.08879 5.21307 5.30249 5.35032 5.41936 5.52512 5.60347 5.63291 5.64159 5.81526 5.97153 6.05800 6.27740 6.41383 6.50700 6.56333 6.83438 6.85125 7.04697 7.27246 7.45698 7.56814 7.60710 7.77428 7.81394 8.00055 8.51195 9.07472 9.73584 10.62491 11.43836 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.037336 B = 0.001773 C = 0.001750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.758074 B =15792.362657 C =15992.880711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.455 5.455 3 C 0.184 3.816 4 N -0.494 5.494 5 C -0.006 4.006 6 C -0.013 4.013 7 C -0.063 4.063 8 C 0.514 3.486 9 O -0.520 6.520 10 N -0.721 5.721 11 C 0.135 3.865 12 H 0.113 0.887 13 C -0.167 4.167 14 C 0.515 3.485 15 O -0.507 6.507 16 N -0.606 5.606 17 C 0.098 3.902 18 C 0.153 3.847 19 N -0.605 5.605 20 C -0.219 4.219 21 H 0.081 0.919 22 C -0.009 4.009 23 N -0.920 5.920 24 Si 0.914 3.086 25 H -0.289 1.289 26 H -0.290 1.290 27 H -0.280 1.280 28 C 0.111 3.889 29 C 0.098 3.902 30 H 0.079 0.921 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.205 0.795 34 H 0.167 0.833 35 H 0.119 0.881 36 H 0.100 0.900 37 H 0.404 0.596 38 H 0.101 0.899 39 H 0.103 0.897 40 H 0.106 0.894 41 H 0.056 0.944 42 H 0.070 0.930 43 H 0.253 0.747 44 H 0.043 0.957 45 H 0.040 0.960 46 H 0.085 0.915 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.950 20.017 -20.456 29.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.138 5.138 3 C -0.098 4.098 4 N -0.212 5.212 5 C -0.155 4.155 6 C -0.127 4.127 7 C -0.105 4.105 8 C 0.299 3.701 9 O -0.395 6.395 10 N -0.374 5.374 11 C 0.029 3.971 12 H 0.131 0.869 13 C -0.208 4.208 14 C 0.301 3.699 15 O -0.381 6.381 16 N -0.341 5.341 17 C -0.004 4.004 18 C 0.027 3.973 19 N -0.331 5.331 20 C -0.347 4.347 21 H 0.098 0.902 22 C -0.205 4.205 23 N -0.567 5.567 24 Si 0.744 3.256 25 H -0.216 1.216 26 H -0.216 1.216 27 H -0.206 1.206 28 C -0.016 4.016 29 C -0.026 4.026 30 H 0.098 0.902 31 H 0.108 0.892 32 H 0.102 0.898 33 H 0.221 0.779 34 H 0.185 0.815 35 H 0.137 0.863 36 H 0.118 0.882 37 H 0.239 0.761 38 H 0.120 0.880 39 H 0.121 0.879 40 H 0.124 0.876 41 H 0.074 0.926 42 H 0.088 0.912 43 H 0.063 0.937 44 H 0.061 0.939 45 H 0.058 0.942 46 H 0.104 0.896 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 7.093 20.628 -19.139 29.020 hybrid contribution -1.218 -1.485 0.317 1.946 sum 5.876 19.143 -18.823 27.482 Atomic orbital electron populations 1.22067 0.76695 1.04566 1.03999 1.45214 1.07506 1.06663 1.54381 1.24912 0.85609 0.93340 1.05927 1.70281 1.19409 1.11937 1.19558 1.22000 0.95534 0.91143 1.06789 1.20357 0.91374 0.88330 1.12680 1.20012 1.04477 0.90863 0.95107 1.20542 0.76709 0.81620 0.91198 1.90782 1.46497 1.56125 1.46066 1.45919 1.69887 1.12894 1.08684 1.21808 0.97880 0.94042 0.83352 0.86879 1.22819 0.98093 0.98959 1.00978 1.20578 0.80985 0.84867 0.83494 1.90797 1.35144 1.80466 1.31721 1.48503 1.33878 1.15972 1.35731 1.24092 1.02765 0.80487 0.93088 1.22787 0.91312 0.95857 0.87319 1.45710 1.34264 1.28552 1.24600 1.18996 1.12026 1.02563 1.01131 0.90168 1.24802 0.97778 0.99653 0.98283 1.69830 1.20901 1.38529 1.27458 0.86093 0.77964 0.81287 0.80261 1.21605 1.21641 1.20598 1.22926 0.93974 0.92433 0.92257 1.22213 0.96467 0.92256 0.91693 0.90223 0.89205 0.89771 0.77885 0.81548 0.86260 0.88155 0.76106 0.88028 0.87913 0.87603 0.92621 0.91156 0.93680 0.93889 0.94223 0.89643 0.90869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.24 11.00 59.84 0.66 0.90 16 2 N -0.45 -3.30 3.15 -121.37 -0.38 -3.68 16 3 C 0.18 1.54 12.56 -90.37 -1.14 0.41 16 4 N -0.49 -5.64 11.25 -14.67 -0.16 -5.80 16 5 C -0.01 -0.06 11.79 -17.81 -0.21 -0.27 16 6 C -0.01 -0.10 5.45 -81.60 -0.44 -0.55 16 7 C -0.06 -0.30 6.04 -29.03 -0.18 -0.47 16 8 C 0.51 3.97 7.82 -10.98 -0.09 3.88 16 9 O -0.52 -6.61 15.67 5.56 0.09 -6.52 16 10 N -0.72 -4.23 5.15 -52.23 -0.27 -4.50 16 11 C 0.13 1.18 3.53 -66.30 -0.23 0.95 16 12 H 0.11 1.16 7.54 -51.93 -0.39 0.76 16 13 C -0.17 -1.87 6.59 -26.75 -0.18 -2.05 16 14 C 0.51 8.49 7.42 -10.86 -0.08 8.41 16 15 O -0.51 -11.17 14.61 5.55 0.08 -11.09 16 16 N -0.61 -8.99 3.15 -166.63 -0.53 -9.51 16 17 C 0.10 1.84 4.81 -70.14 -0.34 1.50 16 18 C 0.15 3.78 6.90 -2.84 -0.02 3.76 16 19 N -0.60 -16.28 3.70 -177.87 -0.66 -16.94 16 20 C -0.22 -6.39 10.70 -15.06 -0.16 -6.55 16 21 H 0.08 2.24 7.83 -52.49 -0.41 1.83 16 22 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 23 N -0.92 -28.03 11.39 55.49 0.63 -27.40 16 24 Si 0.91 22.66 29.55 -169.99 -5.02 17.63 16 25 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 26 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 27 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 28 C 0.11 2.42 8.44 -2.97 -0.03 2.40 16 29 C 0.10 0.90 7.08 -3.12 -0.02 0.88 16 30 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.09 0.11 8.14 -51.93 -0.42 -0.31 16 32 H 0.08 0.16 7.12 -51.93 -0.37 -0.21 16 33 H 0.20 0.93 8.06 -52.49 -0.42 0.51 16 34 H 0.17 1.41 8.06 -52.48 -0.42 0.98 16 35 H 0.12 0.27 8.14 -51.93 -0.42 -0.16 16 36 H 0.10 0.23 7.09 -51.93 -0.37 -0.14 16 37 H 0.40 1.11 8.43 -40.82 -0.34 0.77 16 38 H 0.10 1.20 8.14 -51.92 -0.42 0.78 16 39 H 0.10 0.99 8.08 -51.93 -0.42 0.57 16 40 H 0.11 1.77 8.14 -51.93 -0.42 1.35 16 41 H 0.06 1.52 5.71 -51.93 -0.30 1.22 16 42 H 0.07 1.87 7.17 -51.93 -0.37 1.50 16 43 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 44 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.04 0.92 7.27 -51.93 -0.38 0.55 16 46 H 0.09 0.69 8.14 -51.92 -0.42 0.27 16 47 H 0.07 0.52 7.80 -51.93 -0.41 0.11 16 LS Contribution 390.04 15.07 5.88 5.88 Total: -1.00 -41.57 390.04 -9.59 -51.16 By element: Atomic # 1 Polarization: 4.64 SS G_CDS: -6.69 Total: -2.06 kcal Atomic # 6 Polarization: 15.38 SS G_CDS: -2.54 Total: 12.84 kcal Atomic # 7 Polarization: -66.48 SS G_CDS: -1.37 Total: -67.85 kcal Atomic # 8 Polarization: -17.77 SS G_CDS: 0.17 Total: -17.61 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.02 Total: 17.63 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -41.57 -9.59 -51.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094807861.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.633 kcal (2) G-P(sol) polarization free energy of solvation -41.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds