Wall clock time and date at job start Wed Apr 1 2020 05:36:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.35047 * 126.39862 * 2 1 4 4 N 1.30498 * 108.70308 * 180.02562 * 3 2 1 5 5 C 1.34126 * 109.25436 * 359.75540 * 4 3 2 6 6 C 1.34666 * 108.02102 * 0.39863 * 5 4 3 7 7 C 1.50708 * 126.59238 * 179.87594 * 6 5 4 8 8 C 1.50704 * 109.46975 * 84.68499 * 7 6 5 9 9 O 1.21278 * 120.00158 * 0.02562 * 8 7 6 10 10 N 1.34775 * 119.99461 * 180.02562 * 8 7 6 11 11 C 1.46501 * 119.99694 * 180.02562 * 10 8 7 12 12 H 1.09001 * 110.85453 * 328.78965 * 11 10 8 13 13 C 1.54618 * 110.97167 * 92.62243 * 11 10 8 14 14 C 1.51284 * 104.19819 * 142.91571 * 13 11 10 15 15 O 1.21284 * 124.94089 * 163.77039 * 14 13 11 16 16 N 1.34413 * 110.11346 * 343.74895 * 14 13 11 17 17 C 1.46500 * 124.34722 * 179.85759 * 16 14 13 18 18 C 1.53948 * 113.74363 * 38.44297 * 17 16 14 19 19 N 1.47815 * 86.03641 * 222.08378 * 18 17 16 20 20 C 1.36933 * 134.45815 * 204.64224 * 19 18 17 21 21 H 1.08000 * 119.99861 * 179.86496 * 20 19 18 22 22 C 1.38814 * 119.99844 * 359.86608 * 20 19 18 23 23 N 1.31624 * 119.99899 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 120.00096 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.46609 * 90.00071 * 24 22 20 26 26 H 1.48497 * 109.47004 * 210.00105 * 24 22 20 27 27 H 1.48496 * 109.47057 * 330.00066 * 24 22 20 28 28 C 1.47582 * 91.05036 * 24.54595 * 19 18 17 29 29 C 1.46766 * 111.30232 * 359.58991 * 16 14 13 30 30 H 1.09005 * 109.47153 * 269.99431 * 1 2 3 31 31 H 1.08994 * 109.47265 * 29.99850 * 1 2 3 32 32 H 1.09002 * 109.47162 * 149.99890 * 1 2 3 33 33 H 1.07999 * 125.64816 * 359.97438 * 3 2 1 34 34 H 1.08005 * 125.99114 * 180.25136 * 5 4 3 35 35 H 1.09005 * 109.46488 * 324.68891 * 7 6 5 36 36 H 1.08994 * 109.47002 * 204.68970 * 7 6 5 37 37 H 0.97003 * 120.00312 * 0.02562 * 10 8 7 38 38 H 1.09008 * 110.48943 * 261.59416 * 13 11 10 39 39 H 1.09000 * 110.48637 * 24.10465 * 13 11 10 40 40 H 1.09006 * 112.94410 * 170.03414 * 17 16 14 41 41 H 1.09000 * 113.76675 * 336.34733 * 18 17 16 42 42 H 1.08998 * 113.77164 * 107.74563 * 18 17 16 43 43 H 0.96998 * 119.99500 * 179.97438 * 23 22 20 44 44 H 1.09001 * 113.77094 * 221.14962 * 28 19 18 45 45 H 1.09002 * 113.76745 * 89.75623 * 28 19 18 46 46 H 1.09008 * 110.24439 * 136.01733 * 29 16 14 47 47 H 1.08998 * 110.24767 * 257.92806 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2663 1.0870 0.0000 4 7 3.5095 0.6903 -0.0006 5 6 3.5460 -0.6504 0.0045 6 6 2.2773 -1.1017 -0.0006 7 6 1.8364 -2.5429 -0.0004 8 6 1.8088 -3.0595 1.4151 9 8 2.1164 -2.3293 2.3333 10 7 1.4423 -4.3330 1.6605 11 6 1.4149 -4.8351 3.0365 12 1 2.1747 -4.3435 3.6441 13 6 0.0105 -4.6641 3.6602 14 6 -0.1719 -5.9030 4.5090 15 8 -1.0085 -6.0330 5.3775 16 7 0.7278 -6.8388 4.1604 17 6 0.8312 -8.1596 4.7857 18 6 -0.5301 -8.7903 5.1307 19 7 0.0996 -9.2046 6.4022 20 6 -0.1347 -10.2052 7.3072 21 1 0.4896 -10.2977 8.1836 22 6 -1.1746 -11.1007 7.0980 23 7 -1.9357 -10.9876 6.0301 24 14 -1.4938 -12.4661 8.3322 25 1 -2.4455 -11.9861 9.3662 26 1 -2.0741 -13.6402 7.6322 27 1 -0.2157 -12.8574 8.9791 28 6 1.0832 -8.1088 6.3035 29 6 1.5891 -6.3697 3.0686 30 1 -0.3634 -0.0001 1.0277 31 1 -0.3633 0.8899 -0.5138 32 1 -0.3633 -0.8900 -0.5139 33 1 1.9334 2.1144 -0.0004 34 1 4.4369 -1.2611 0.0092 35 1 2.5348 -3.1365 -0.5903 36 1 0.8392 -2.6178 -0.4340 37 1 1.1966 -4.9172 0.9261 38 1 -0.0252 -3.7682 4.2802 39 1 -0.7500 -4.6180 2.8807 40 1 1.5033 -8.8312 4.2515 41 1 -1.3326 -8.0631 5.2543 42 1 -0.8051 -9.6232 4.4835 43 1 -2.6621 -11.6135 5.8838 44 1 2.0940 -8.3985 6.5910 45 1 0.7557 -7.1809 6.7724 46 1 2.6288 -6.6272 3.2711 47 1 1.2703 -6.8067 2.1223 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001094807861.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:36:21 Heat of formation + Delta-G solvation = 39.062357 kcal Electronic energy + Delta-G solvation = -29905.676469 eV Core-core repulsion = 25704.983217 eV Total energy + Delta-G solvation = -4200.693253 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.99195 -41.87823 -40.47200 -38.94239 -37.63277 -35.23549 -34.91874 -34.18351 -33.19476 -31.53762 -29.21877 -28.70089 -27.77494 -27.53735 -26.62288 -25.24057 -23.15792 -22.36101 -22.14366 -21.87002 -20.68284 -19.78417 -18.81351 -18.33958 -18.04459 -17.74642 -17.44558 -16.98932 -16.50854 -16.36844 -16.26584 -15.86965 -15.60613 -15.20930 -15.07110 -14.84096 -14.64678 -14.48882 -14.43721 -14.03432 -13.90584 -13.70650 -13.58431 -13.42461 -13.29970 -13.25902 -13.01687 -12.84069 -12.70594 -12.56611 -12.24820 -12.03740 -11.91315 -11.52400 -11.14757 -11.00687 -10.89030 -10.67195 -10.43423 -10.08784 -9.57702 -9.25734 -8.95330 -7.93727 -5.28185 1.05287 1.42627 1.46186 1.54705 1.57166 1.65524 1.86919 1.99479 2.17705 2.37106 2.48205 3.24499 3.35349 3.46092 3.50157 3.61983 3.77692 3.86001 3.94636 4.03049 4.03483 4.07951 4.21186 4.24159 4.39264 4.51852 4.52559 4.58603 4.65845 4.66461 4.75917 4.77250 4.82811 4.87169 4.90463 4.92330 5.20123 5.21534 5.43574 5.45221 5.46852 5.83644 5.85118 5.88722 6.25229 6.34542 6.58756 6.87758 7.18107 7.21901 7.30367 7.56120 8.51653 9.23546 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.037336 B = 0.001773 C = 0.001750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.758074 B =15792.362657 C =15992.880711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.456 5.456 3 C 0.174 3.826 4 N -0.542 5.542 5 C -0.044 4.044 6 C -0.011 4.011 7 C -0.056 4.056 8 C 0.517 3.483 9 O -0.575 6.575 10 N -0.700 5.700 11 C 0.151 3.849 12 H 0.101 0.899 13 C -0.152 4.152 14 C 0.502 3.498 15 O -0.575 6.575 16 N -0.605 5.605 17 C 0.137 3.863 18 C 0.149 3.851 19 N -0.635 5.635 20 C -0.238 4.238 21 H 0.085 0.915 22 C -0.069 4.069 23 N -0.953 5.953 24 Si 0.985 3.015 25 H -0.291 1.291 26 H -0.289 1.289 27 H -0.263 1.263 28 C 0.110 3.890 29 C 0.099 3.901 30 H 0.072 0.928 31 H 0.112 0.888 32 H 0.105 0.895 33 H 0.232 0.768 34 H 0.169 0.831 35 H 0.151 0.849 36 H 0.135 0.865 37 H 0.425 0.575 38 H 0.094 0.906 39 H 0.125 0.875 40 H 0.140 0.860 41 H 0.022 0.978 42 H 0.044 0.956 43 H 0.249 0.751 44 H 0.068 0.932 45 H 0.020 0.980 46 H 0.109 0.891 47 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.811 19.804 -22.782 31.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.138 5.138 3 C -0.108 4.108 4 N -0.260 5.260 5 C -0.192 4.192 6 C -0.127 4.127 7 C -0.096 4.096 8 C 0.305 3.695 9 O -0.453 6.453 10 N -0.354 5.354 11 C 0.044 3.956 12 H 0.119 0.881 13 C -0.193 4.193 14 C 0.290 3.710 15 O -0.454 6.454 16 N -0.338 5.338 17 C 0.034 3.966 18 C 0.023 3.977 19 N -0.362 5.362 20 C -0.366 4.366 21 H 0.102 0.898 22 C -0.262 4.262 23 N -0.602 5.602 24 Si 0.812 3.188 25 H -0.219 1.219 26 H -0.215 1.215 27 H -0.188 1.188 28 C -0.016 4.016 29 C -0.024 4.024 30 H 0.091 0.909 31 H 0.131 0.869 32 H 0.124 0.876 33 H 0.248 0.752 34 H 0.186 0.814 35 H 0.169 0.831 36 H 0.153 0.847 37 H 0.264 0.736 38 H 0.112 0.888 39 H 0.143 0.857 40 H 0.157 0.843 41 H 0.040 0.960 42 H 0.063 0.937 43 H 0.058 0.942 44 H 0.086 0.914 45 H 0.038 0.962 46 H 0.127 0.873 47 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 7.996 20.425 -21.545 30.746 hybrid contribution -1.498 -1.312 1.039 2.246 sum 6.498 19.112 -20.506 28.775 Atomic orbital electron populations 1.22357 0.74419 1.06873 1.04236 1.45478 1.08896 1.06119 1.53268 1.25475 0.85248 0.94860 1.05223 1.70198 1.21473 1.13019 1.21345 1.22270 0.96941 0.91167 1.08776 1.20802 0.90933 0.90037 1.10965 1.20151 1.07251 0.88847 0.93374 1.21031 0.75314 0.81375 0.91799 1.90784 1.48968 1.57604 1.47926 1.45671 1.69036 1.12739 1.07989 1.21478 0.95624 0.93826 0.84671 0.88087 1.22737 1.00521 0.95554 1.00536 1.21517 0.79978 0.86510 0.82951 1.90763 1.37899 1.81922 1.34789 1.48459 1.34436 1.14270 1.36654 1.23379 0.98694 0.82457 0.92111 1.22592 0.93669 0.94622 0.86800 1.46154 1.35689 1.29310 1.25064 1.19436 1.12172 1.03243 1.01782 0.89772 1.25727 0.97747 1.02354 1.00334 1.70034 1.21374 1.39481 1.29291 0.84995 0.78168 0.77988 0.77656 1.21865 1.21472 1.18759 1.23017 0.93825 0.90140 0.94648 1.22564 0.96649 0.92169 0.90974 0.90901 0.86934 0.87640 0.75209 0.81380 0.83132 0.84729 0.73604 0.88783 0.85684 0.84289 0.96009 0.93738 0.94183 0.91419 0.96179 0.87311 0.87275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.25 11.00 127.77 1.41 1.66 16 2 N -0.46 -5.76 3.15 -537.89 -1.70 -7.46 16 3 C 0.17 2.79 12.56 180.26 2.26 5.05 16 4 N -0.54 -12.51 11.25 -200.31 -2.25 -14.77 16 5 C -0.04 -0.87 11.79 83.52 0.98 0.11 16 6 C -0.01 -0.16 5.45 40.95 0.22 0.06 16 7 C -0.06 -0.30 6.04 29.11 0.18 -0.13 16 8 C 0.52 6.30 7.82 87.66 0.69 6.98 16 9 O -0.57 -13.74 15.67 -3.02 -0.05 -13.79 16 10 N -0.70 -5.17 5.15 -437.55 -2.25 -7.42 16 11 C 0.15 2.15 3.53 46.05 0.16 2.32 16 12 H 0.10 1.83 7.54 -2.39 -0.02 1.81 16 13 C -0.15 -3.15 6.59 30.58 0.20 -2.95 16 14 C 0.50 16.48 7.42 87.90 0.65 17.13 16 15 O -0.57 -26.58 14.61 -3.04 -0.04 -26.62 16 16 N -0.60 -16.85 3.15 -799.68 -2.52 -19.37 16 17 C 0.14 4.98 4.81 46.75 0.22 5.20 16 18 C 0.15 7.60 6.90 86.44 0.60 8.20 16 19 N -0.64 -34.91 3.70 -716.65 -2.65 -37.57 16 20 C -0.24 -14.09 10.70 84.03 0.90 -13.19 16 21 H 0.08 4.74 7.83 -2.91 -0.02 4.72 16 22 C -0.07 -4.08 5.50 84.86 0.47 -3.62 16 23 N -0.95 -59.83 11.39 21.65 0.25 -59.58 16 24 Si 0.98 47.22 29.55 68.60 2.03 49.25 16 25 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 26 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 27 H -0.26 -11.75 7.11 99.48 0.71 -11.05 16 28 C 0.11 4.78 8.44 86.48 0.73 5.51 16 29 C 0.10 1.39 7.08 86.83 0.61 2.00 16 30 H 0.07 0.43 8.14 -2.38 -0.02 0.41 16 31 H 0.11 -0.06 8.14 -2.39 -0.02 -0.08 16 32 H 0.11 -0.03 7.12 -2.39 -0.02 -0.04 16 33 H 0.23 1.86 8.06 -2.91 -0.02 1.84 16 34 H 0.17 2.91 8.06 -2.91 -0.02 2.88 16 35 H 0.15 -0.07 8.14 -2.38 -0.02 -0.09 16 36 H 0.13 -0.15 7.09 -2.39 -0.02 -0.16 16 37 H 0.42 -0.13 8.43 -92.71 -0.78 -0.91 16 38 H 0.09 2.16 8.14 -2.38 -0.02 2.14 16 39 H 0.13 2.05 8.08 -2.39 -0.02 2.03 16 40 H 0.14 4.19 8.14 -2.38 -0.02 4.18 16 41 H 0.02 1.27 5.71 -2.39 -0.01 1.26 16 42 H 0.04 2.45 7.17 -2.39 -0.02 2.44 16 43 H 0.25 15.07 8.31 -92.71 -0.77 14.30 16 44 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 45 H 0.02 0.97 7.27 -2.39 -0.02 0.95 16 46 H 0.11 1.18 8.14 -2.38 -0.02 1.16 16 47 H 0.11 0.88 7.80 -2.39 -0.02 0.86 16 Total: -1.00 -99.30 390.04 1.31 -97.98 By element: Atomic # 1 Polarization: 4.78 SS G_CDS: 0.22 Total: 5.00 kcal Atomic # 6 Polarization: 24.06 SS G_CDS: 10.29 Total: 34.35 kcal Atomic # 7 Polarization: -135.04 SS G_CDS: -11.13 Total: -146.17 kcal Atomic # 8 Polarization: -40.32 SS G_CDS: -0.09 Total: -40.41 kcal Atomic # 14 Polarization: 47.22 SS G_CDS: 2.03 Total: 49.25 kcal Total: -99.30 1.31 -97.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094807861.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.045 kcal (2) G-P(sol) polarization free energy of solvation -99.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.982 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds