Wall clock time and date at job start Wed Apr 1 2020 05:49:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46893 * 111.00351 * 2 1 4 4 C 1.39197 * 110.99914 * 236.04712 * 2 1 3 5 5 C 1.39139 * 119.93525 * 59.72717 * 4 2 1 6 6 C 1.37654 * 120.09639 * 179.72539 * 5 4 2 7 7 C 1.39772 * 119.96623 * 0.54730 * 6 5 4 8 8 C 1.47525 * 120.06200 * 179.69963 * 7 6 5 9 9 O 1.21598 * 119.99951 * 180.02562 * 8 7 6 10 10 N 1.34778 * 120.00179 * 0.02935 * 8 7 6 11 11 C 1.46496 * 120.00096 * 179.97438 * 10 8 7 12 12 H 1.09002 * 110.55847 * 33.10648 * 11 10 8 13 13 C 1.54859 * 110.62444 * 156.00399 * 11 10 8 14 14 C 1.55838 * 103.44130 * 118.49360 * 13 11 10 15 15 H 1.09003 * 115.55611 * 158.81145 * 14 13 11 16 16 C 1.55838 * 105.06438 * 288.17511 * 14 13 11 17 17 C 1.54848 * 103.44887 * 71.82606 * 16 14 13 18 18 C 1.55836 * 110.63153 * 270.03148 * 11 10 8 19 19 H 1.09007 * 115.56322 * 82.69900 * 18 11 10 20 20 N 1.50238 * 101.05599 * 32.94124 * 14 13 11 21 21 C 1.36933 * 130.84243 * 126.06610 * 20 14 13 22 22 H 1.08000 * 119.99632 * 179.97438 * 21 20 14 23 23 C 1.38808 * 120.00205 * 359.97012 * 21 20 14 24 24 N 1.31617 * 119.99792 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00119 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.46870 * 90.00605 * 25 23 21 27 27 H 1.48502 * 109.47232 * 210.00272 * 25 23 21 28 28 H 1.48495 * 109.47242 * 330.00253 * 25 23 21 29 29 C 1.39808 * 119.87586 * 359.72689 * 7 6 5 30 30 C 1.37789 * 119.90103 * 0.02562 * 29 7 6 31 31 F 1.35098 * 119.98328 * 180.02562 * 30 29 7 32 32 H 1.08998 * 109.47540 * 183.95240 * 1 2 3 33 33 H 1.09005 * 109.47338 * 63.95202 * 1 2 3 34 34 H 1.09002 * 109.47113 * 303.95404 * 1 2 3 35 35 H 1.09001 * 109.47168 * 56.04413 * 3 2 1 36 36 H 1.09000 * 109.47604 * 176.04787 * 3 2 1 37 37 H 1.09004 * 109.47298 * 296.05082 * 3 2 1 38 38 H 1.08004 * 119.95289 * 359.97438 * 5 4 2 39 39 H 1.08000 * 120.01942 * 180.25446 * 6 5 4 40 40 H 0.97001 * 119.99926 * 359.97438 * 10 8 7 41 41 H 1.09006 * 110.62414 * 236.98492 * 13 11 10 42 42 H 1.08998 * 110.62797 * 0.02562 * 13 11 10 43 43 H 1.09004 * 110.62565 * 190.31923 * 16 14 13 44 44 H 1.09000 * 110.62715 * 313.33707 * 16 14 13 45 45 H 1.08995 * 110.63041 * 241.50786 * 17 16 14 46 46 H 1.09004 * 110.76207 * 118.55127 * 17 16 14 47 47 H 0.97002 * 120.00213 * 179.97438 * 24 23 21 48 48 H 1.07998 * 120.05006 * 180.02562 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.9678 -0.7258 -1.0779 5 6 1.6491 -0.3457 -2.3779 6 6 2.1452 -1.0577 -3.4465 7 6 2.9609 -2.1710 -3.2254 8 6 3.4883 -2.9395 -4.3690 9 8 4.1974 -3.9081 -4.1753 10 7 3.1841 -2.5680 -5.6283 11 6 3.7083 -3.3308 -6.7639 12 1 3.7939 -4.3870 -6.5086 13 6 2.8083 -3.1419 -8.0099 14 6 3.7633 -2.4823 -9.0498 15 1 3.4640 -2.5830 -10.0931 16 6 3.9797 -1.0274 -8.5352 17 6 4.8795 -1.2162 -7.2892 18 6 5.0843 -2.7596 -7.2208 19 1 5.9486 -3.1044 -6.6531 20 7 5.0741 -3.1165 -8.6802 21 6 5.9807 -3.8067 -9.4396 22 1 6.8818 -4.1929 -8.9865 23 6 5.7417 -4.0100 -10.7917 24 7 4.6437 -3.5390 -11.3440 25 14 6.9788 -4.9509 -11.8279 26 1 6.6447 -6.3976 -11.8054 27 1 6.9329 -4.4539 -13.2265 28 1 8.3423 -4.7491 -11.2755 29 6 3.2756 -2.5552 -1.9186 30 6 2.7804 -1.8356 -0.8529 31 9 3.0839 -2.2051 0.4106 32 1 -0.3634 -1.0252 0.0708 33 1 -0.3634 0.4513 -0.9233 34 1 -0.3633 0.5740 0.8524 35 1 1.5898 1.9163 0.8524 36 1 3.0828 1.3432 0.0708 37 1 1.7044 1.8723 -0.9233 38 1 1.0149 0.5116 -2.5490 39 1 1.9004 -0.7591 -4.4551 40 1 2.6181 -1.7955 -5.7828 41 1 2.4499 -4.1048 -8.3741 42 1 1.9723 -2.4803 -7.7830 43 1 4.4881 -0.4253 -9.2884 44 1 3.0288 -0.5731 -8.2568 45 1 4.3750 -0.8556 -6.3929 46 1 5.8346 -0.7077 -7.4217 47 1 4.4768 -3.6807 -12.2889 48 1 3.9060 -3.4147 -1.7445 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001096613176.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:49:09 Heat of formation + Delta-G solvation = 13.802718 kcal Electronic energy + Delta-G solvation = -30731.713125 eV Core-core repulsion = 26510.004570 eV Total energy + Delta-G solvation = -4221.708554 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.175 amu Computer time = 1.74 seconds Orbital eigenvalues (eV) -48.98531 -40.59681 -39.69840 -38.44079 -36.58566 -34.10719 -32.40904 -30.99015 -30.61874 -29.28352 -29.02840 -28.07204 -27.60252 -25.54374 -24.18063 -23.05592 -22.45690 -21.40809 -20.57304 -19.58762 -18.78692 -18.26551 -17.12259 -17.04936 -16.82374 -16.08372 -16.05046 -15.53154 -15.09738 -15.01726 -14.82667 -14.79678 -14.41995 -14.19772 -14.03726 -13.84316 -13.35317 -13.06823 -12.93559 -12.43035 -12.36040 -12.34661 -12.18825 -12.08390 -11.78872 -11.67460 -11.53375 -11.08436 -10.95544 -10.92428 -10.85850 -10.26286 -10.12789 -9.94742 -9.80595 -9.41909 -9.34419 -9.29217 -9.07510 -8.98420 -8.95905 -8.55956 -6.94528 -5.75342 -3.13288 0.35318 0.83949 2.62707 3.19604 3.31278 3.39016 3.44253 3.45634 3.55167 3.97995 4.35125 4.42567 4.56141 4.65898 4.70264 4.83184 4.86198 5.03305 5.04840 5.16455 5.25746 5.35334 5.41297 5.42795 5.45785 5.58153 5.63398 5.75696 5.78454 5.81343 5.87282 5.93456 6.02526 6.06946 6.23625 6.27000 6.28624 6.32472 6.49007 6.55185 6.61392 6.76942 6.82557 6.91645 6.95043 7.22720 7.49722 7.66318 7.77748 8.13770 8.35424 9.07999 9.70560 10.50245 11.34324 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.025546 B = 0.002281 C = 0.002189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.795699 B =12270.195396 C =12790.743523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.510 5.510 3 C 0.028 3.972 4 C 0.070 3.930 5 C -0.128 4.128 6 C -0.088 4.088 7 C -0.098 4.098 8 C 0.551 3.449 9 O -0.534 6.534 10 N -0.703 5.703 11 C 0.126 3.874 12 H 0.086 0.914 13 C -0.142 4.142 14 C 0.154 3.846 15 H 0.155 0.845 16 C -0.137 4.137 17 C -0.131 4.131 18 C 0.128 3.872 19 H 0.086 0.914 20 N -0.589 5.589 21 C -0.210 4.210 22 H 0.080 0.920 23 C -0.012 4.012 24 N -0.924 5.924 25 Si 0.917 3.083 26 H -0.289 1.289 27 H -0.291 1.291 28 H -0.282 1.282 29 C -0.093 4.093 30 C 0.118 3.882 31 F -0.125 7.125 32 H 0.072 0.928 33 H 0.035 0.965 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.035 0.965 38 H 0.135 0.865 39 H 0.135 0.865 40 H 0.394 0.606 41 H 0.067 0.933 42 H 0.054 0.946 43 H 0.055 0.945 44 H 0.044 0.956 45 H 0.049 0.951 46 H 0.052 0.948 47 H 0.254 0.746 48 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.823 10.861 19.324 24.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.231 5.231 3 C -0.119 4.119 4 C -0.026 4.026 5 C -0.148 4.148 6 C -0.108 4.108 7 C -0.101 4.101 8 C 0.337 3.663 9 O -0.411 6.411 10 N -0.354 5.354 11 C 0.020 3.980 12 H 0.105 0.895 13 C -0.182 4.182 14 C 0.047 3.953 15 H 0.172 0.828 16 C -0.176 4.176 17 C -0.170 4.170 18 C 0.019 3.981 19 H 0.104 0.896 20 N -0.309 5.309 21 C -0.338 4.338 22 H 0.097 0.903 23 C -0.207 4.207 24 N -0.572 5.572 25 Si 0.748 3.252 26 H -0.216 1.216 27 H -0.217 1.217 28 H -0.207 1.207 29 C -0.113 4.113 30 C 0.097 3.903 31 F -0.103 7.103 32 H 0.091 0.909 33 H 0.053 0.947 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.091 0.909 37 H 0.053 0.947 38 H 0.153 0.847 39 H 0.153 0.847 40 H 0.230 0.770 41 H 0.085 0.915 42 H 0.073 0.927 43 H 0.074 0.926 44 H 0.063 0.937 45 H 0.068 0.932 46 H 0.071 0.929 47 H 0.065 0.935 48 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -10.015 9.787 19.627 24.111 hybrid contribution 0.071 0.338 -0.990 1.048 sum -9.945 10.125 18.638 23.426 Atomic orbital electron populations 1.22499 0.85175 1.03064 1.01218 1.59361 1.08977 1.14610 1.40169 1.22494 1.01328 0.86848 1.01217 1.18902 0.98512 0.95142 0.90040 1.21414 1.00909 1.00694 0.91798 1.21253 0.95944 0.94006 0.99549 1.19962 0.99760 0.96849 0.93561 1.18020 0.81027 0.84311 0.82969 1.90807 1.37498 1.27543 1.85286 1.46179 1.51482 1.32190 1.05506 1.22738 0.95780 0.95758 0.83700 0.89540 1.23321 0.97240 1.01464 0.96128 1.23774 0.84246 0.87579 0.99694 0.82809 1.23044 0.97271 1.00278 0.97017 1.22910 0.99232 0.97892 0.96987 1.23202 0.94513 0.92977 0.87433 0.89570 1.46479 1.20494 1.61863 1.02088 1.19067 0.98766 1.25871 0.90085 0.90264 1.24698 0.98033 1.01497 0.96520 1.69428 1.25765 1.50470 1.11544 0.86019 0.80261 0.79388 0.79533 1.21624 1.21688 1.20745 1.21227 0.99534 1.00330 0.90243 1.17356 0.98604 0.94775 0.79548 1.91521 1.91288 1.90647 1.36836 0.90915 0.94672 0.90509 0.90503 0.90893 0.94672 0.84748 0.84740 0.76987 0.91469 0.92750 0.92572 0.93688 0.93207 0.92949 0.93547 0.82916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.33 60.06 0.56 0.73 16 2 N -0.51 -4.35 4.80 -186.79 -0.90 -5.24 16 3 C 0.03 0.18 9.38 60.06 0.56 0.74 16 4 C 0.07 0.67 4.73 -83.76 -0.40 0.27 16 5 C -0.13 -1.04 8.53 -39.46 -0.34 -1.38 16 6 C -0.09 -0.80 9.53 -39.22 -0.37 -1.17 16 7 C -0.10 -1.17 5.88 -104.95 -0.62 -1.78 16 8 C 0.55 8.31 7.76 -12.47 -0.10 8.22 16 9 O -0.53 -10.16 16.00 5.28 0.08 -10.07 16 10 N -0.70 -9.99 3.65 -52.44 -0.19 -10.18 16 11 C 0.13 2.28 3.14 -65.44 -0.21 2.08 16 12 H 0.09 1.78 7.58 -51.93 -0.39 1.38 16 13 C -0.14 -2.59 6.20 -24.24 -0.15 -2.74 16 14 C 0.15 3.35 4.72 -62.81 -0.30 3.06 16 15 H 0.16 3.87 5.52 -51.93 -0.29 3.58 16 16 C -0.14 -2.53 6.44 -24.24 -0.16 -2.68 16 17 C -0.13 -2.32 6.32 -24.24 -0.15 -2.48 16 18 C 0.13 2.62 5.35 -62.80 -0.34 2.28 16 19 H 0.09 1.84 8.14 -51.92 -0.42 1.42 16 20 N -0.59 -14.38 2.99 -145.82 -0.44 -14.81 16 21 C -0.21 -5.72 10.59 -15.06 -0.16 -5.88 16 22 H 0.08 2.13 7.83 -52.49 -0.41 1.71 16 23 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 24 N -0.92 -25.83 10.46 55.49 0.58 -25.25 16 25 Si 0.92 21.86 29.55 -169.99 -5.02 16.84 16 26 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 27 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 28 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 29 C -0.09 -1.12 9.56 -39.16 -0.37 -1.49 16 30 C 0.12 1.34 7.30 -39.32 -0.29 1.05 16 31 F -0.12 -1.54 17.07 2.25 0.04 -1.50 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.03 0.19 7.08 -51.93 -0.37 -0.18 16 34 H 0.08 0.38 8.12 -51.93 -0.42 -0.04 16 35 H 0.08 0.39 8.12 -51.93 -0.42 -0.03 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.03 0.20 7.34 -51.93 -0.38 -0.18 16 38 H 0.13 0.80 6.99 -52.48 -0.37 0.43 16 39 H 0.13 0.94 6.39 -52.49 -0.34 0.60 16 40 H 0.39 4.46 5.93 -40.82 -0.24 4.22 16 41 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 42 H 0.05 0.82 7.38 -51.93 -0.38 0.43 16 43 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 44 H 0.04 0.69 7.81 -51.93 -0.41 0.28 16 45 H 0.05 0.74 6.39 -51.93 -0.33 0.41 16 46 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 47 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 48 H 0.15 1.90 7.64 -52.49 -0.40 1.50 16 LS Contribution 383.38 15.07 5.78 5.78 Total: -1.00 -31.12 383.38 -9.80 -40.91 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: -6.82 Total: 5.13 kcal Atomic # 6 Polarization: 1.31 SS G_CDS: -2.91 Total: -1.60 kcal Atomic # 7 Polarization: -54.54 SS G_CDS: -0.94 Total: -55.49 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: 0.08 Total: -10.07 kcal Atomic # 9 Polarization: -1.54 SS G_CDS: 0.04 Total: -1.50 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.12 -9.80 -40.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096613176.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.718 kcal (2) G-P(sol) polarization free energy of solvation -31.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.915 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.75 seconds