Wall clock time and date at job start Wed Apr 1 2020 05:06:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21282 * 119.99912 * 2 1 4 4 N 1.34779 * 119.99915 * 180.02562 * 2 1 3 5 5 C 1.46495 * 119.99792 * 355.30323 * 4 2 1 6 6 C 1.46502 * 120.00165 * 175.31050 * 4 2 1 7 7 C 1.50697 * 109.47325 * 89.99299 * 6 4 2 8 8 O 1.21288 * 120.00184 * 0.02562 * 7 6 4 9 9 N 1.34773 * 120.00214 * 180.02562 * 7 6 4 10 10 C 1.46497 * 120.00071 * 180.02562 * 9 7 6 11 11 H 1.08999 * 110.41703 * 323.96231 * 10 9 7 12 12 C 1.54777 * 110.56202 * 201.40054 * 10 9 7 13 13 C 1.53385 * 101.45111 * 217.03971 * 12 10 9 14 14 C 1.52456 * 115.84804 * 253.15818 * 13 12 10 15 15 N 1.47262 * 87.71595 * 218.49132 * 14 13 12 16 16 C 1.36936 * 135.93754 * 206.19694 * 15 14 13 17 17 H 1.07995 * 120.00226 * 359.97438 * 16 15 14 18 18 C 1.38814 * 119.99673 * 179.97438 * 16 15 14 19 19 N 1.31623 * 120.00148 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99824 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.47042 * 180.02562 * 20 18 16 22 22 H 1.48498 * 109.47091 * 300.00072 * 20 18 16 23 23 H 1.48489 * 109.47469 * 60.00409 * 20 18 16 24 24 C 1.47265 * 88.11960 * 26.45087 * 15 14 13 25 25 N 1.46043 * 106.81160 * 24.81104 * 13 12 10 26 26 C 1.37275 * 142.31551 * 163.61617 * 25 13 12 27 27 C 1.34514 * 106.92884 * 180.11848 * 26 25 13 28 28 N 1.33979 * 108.04692 * 359.97438 * 27 26 25 29 29 C 1.30844 * 109.35920 * 359.97438 * 28 27 26 30 30 H 1.09000 * 109.47298 * 185.21229 * 1 2 3 31 31 H 1.09004 * 109.46519 * 305.20839 * 1 2 3 32 32 H 1.08998 * 109.47224 * 65.20358 * 1 2 3 33 33 H 1.08998 * 109.47634 * 275.46661 * 5 4 2 34 34 H 1.08999 * 109.47395 * 35.47198 * 5 4 2 35 35 H 1.09004 * 109.46710 * 155.46927 * 5 4 2 36 36 H 1.09000 * 109.46865 * 329.99723 * 6 4 2 37 37 H 1.08996 * 109.47260 * 209.99758 * 6 4 2 38 38 H 0.97004 * 119.99715 * 359.97438 * 9 7 6 39 39 H 1.09003 * 111.01932 * 99.00323 * 12 10 9 40 40 H 1.08999 * 111.03444 * 335.08500 * 12 10 9 41 41 H 1.09001 * 113.50810 * 103.78304 * 14 13 12 42 42 H 1.09001 * 113.57027 * 333.21165 * 14 13 12 43 43 H 0.97001 * 120.00149 * 179.97438 * 19 18 16 44 44 H 1.09004 * 113.50688 * 88.25357 * 24 15 14 45 45 H 1.08992 * 113.51151 * 218.83123 * 24 15 14 46 46 H 1.08007 * 126.53141 * 0.11845 * 26 25 13 47 47 H 1.08001 * 125.97691 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.4520 -2.4338 0.1028 6 6 3.6422 -1.1694 -0.1042 7 6 4.2439 -1.1125 1.2762 8 8 3.5231 -1.0744 2.2509 9 7 5.5831 -1.1039 1.4278 10 6 6.1680 -1.0492 2.7699 11 1 5.5613 -0.4227 3.4238 12 6 7.6211 -0.5197 2.7084 13 6 8.3006 -1.3688 3.7900 14 6 8.6464 -0.6428 5.0852 15 7 9.8938 -1.4246 5.1214 16 6 10.7555 -1.8583 6.0933 17 1 10.5644 -1.6211 7.1294 18 6 11.8745 -2.6029 5.7467 19 7 12.1077 -2.8916 4.4838 20 14 13.0504 -3.1940 7.0724 21 1 14.1568 -3.9615 6.4463 22 1 13.6083 -2.0238 7.7967 23 1 12.3213 -4.0660 8.0278 24 6 9.8128 -1.5306 3.6548 25 7 7.5173 -2.5946 3.9188 26 6 7.5720 -3.8711 4.4209 27 6 6.3931 -4.4540 4.1382 28 7 5.6363 -3.5636 3.4829 29 6 6.3017 -2.4451 3.3474 30 1 -0.3634 -1.0234 0.0934 31 1 -0.3632 0.5925 0.8397 32 1 -0.3633 0.4310 -0.9329 33 1 1.2591 -2.6575 1.1520 34 1 0.5054 -2.3529 -0.4315 35 1 2.0493 -3.2334 -0.3353 36 1 3.9669 -0.3014 -0.6781 37 1 3.9695 -2.0799 -0.6061 38 1 6.1596 -1.1347 0.6483 39 1 7.6620 0.5401 2.9599 40 1 8.0640 -0.7052 1.7298 41 1 7.9665 -0.8705 5.9062 42 1 8.8076 0.4274 4.9554 43 1 12.8899 -3.4117 4.2416 44 1 10.2935 -0.7037 3.1319 45 1 10.1147 -2.5054 3.2719 46 1 8.4031 -4.3214 4.9434 47 1 6.1068 -5.4633 4.3946 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001101610255.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:06:59 Heat of formation + Delta-G solvation = 87.011021 kcal Electronic energy + Delta-G solvation = -30980.114170 eV Core-core repulsion = 26781.500128 eV Total energy + Delta-G solvation = -4198.614042 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.20219 -40.37914 -39.00639 -38.55828 -35.89538 -35.32713 -33.35737 -31.89346 -31.20744 -30.35984 -28.36993 -28.23276 -27.25240 -26.24232 -25.13736 -24.29159 -21.94569 -21.33312 -21.19364 -19.80350 -19.46831 -18.71848 -17.56736 -17.33982 -16.95787 -16.64454 -16.06382 -15.62124 -15.36725 -14.95842 -14.92683 -14.56211 -14.07418 -14.02247 -13.78759 -13.64753 -13.51614 -13.41490 -13.27856 -13.12067 -13.08479 -12.54123 -12.47636 -12.28782 -12.14632 -12.02048 -11.79248 -11.52224 -11.44331 -10.96141 -10.87890 -10.23749 -10.18700 -10.11842 -10.05449 -9.70954 -9.50240 -9.22348 -9.03693 -8.90738 -8.88646 -7.89128 -7.15159 -5.96553 -3.30965 2.29092 2.49518 2.65951 2.66728 3.11615 3.29132 3.31456 3.34441 3.34876 3.66754 4.10263 4.28345 4.34368 4.49732 4.67925 4.73115 4.76295 4.82069 4.83778 4.95912 5.09369 5.10243 5.13034 5.21678 5.37154 5.41372 5.49701 5.50379 5.59568 5.71695 5.77527 5.87877 6.00766 6.03728 6.14569 6.19433 6.25698 6.38087 6.72330 6.88773 6.96541 7.05929 7.24383 7.31908 7.41859 7.63091 7.75147 7.91507 8.23458 8.60431 8.82792 9.49617 10.35398 11.20599 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.026880 B = 0.002367 C = 0.002272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.431000 B =11828.488960 C =12321.102786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.518 3.482 3 O -0.544 6.544 4 N -0.600 5.600 5 C 0.078 3.922 6 C 0.098 3.902 7 C 0.503 3.497 8 O -0.517 6.517 9 N -0.717 5.717 10 C 0.236 3.764 11 H 0.112 0.888 12 C -0.114 4.114 13 C 0.096 3.904 14 C 0.118 3.882 15 N -0.603 5.603 16 C -0.223 4.223 17 H 0.083 0.917 18 C -0.003 4.003 19 N -0.920 5.920 20 Si 0.916 3.084 21 H -0.288 1.288 22 H -0.284 1.284 23 H -0.283 1.283 24 C 0.161 3.839 25 N -0.427 5.427 26 C 0.008 3.992 27 C -0.050 4.050 28 N -0.469 5.469 29 C 0.154 3.846 30 H 0.082 0.918 31 H 0.095 0.905 32 H 0.093 0.907 33 H 0.065 0.935 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.112 0.888 37 H 0.109 0.891 38 H 0.402 0.598 39 H 0.107 0.893 40 H 0.095 0.905 41 H 0.049 0.951 42 H 0.056 0.944 43 H 0.257 0.743 44 H 0.047 0.953 45 H 0.081 0.919 46 H 0.172 0.828 47 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.035 2.011 -13.061 22.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.307 3.693 3 O -0.421 6.421 4 N -0.334 5.334 5 C -0.065 4.065 6 C -0.029 4.029 7 C 0.287 3.713 8 O -0.390 6.390 9 N -0.371 5.371 10 C 0.129 3.871 11 H 0.130 0.870 12 C -0.154 4.154 13 C 0.010 3.990 14 C -0.009 4.009 15 N -0.329 5.329 16 C -0.350 4.350 17 H 0.101 0.899 18 C -0.200 4.200 19 N -0.566 5.566 20 Si 0.745 3.255 21 H -0.214 1.214 22 H -0.210 1.210 23 H -0.209 1.209 24 C 0.035 3.965 25 N -0.109 5.109 26 C -0.127 4.127 27 C -0.198 4.198 28 N -0.188 5.188 29 C -0.110 4.110 30 H 0.101 0.899 31 H 0.113 0.887 32 H 0.112 0.888 33 H 0.083 0.917 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.130 0.870 37 H 0.126 0.874 38 H 0.236 0.764 39 H 0.126 0.874 40 H 0.113 0.887 41 H 0.067 0.933 42 H 0.073 0.927 43 H 0.067 0.933 44 H 0.065 0.935 45 H 0.099 0.901 46 H 0.189 0.811 47 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -18.530 2.292 -12.397 22.412 hybrid contribution 2.066 -0.523 0.863 2.300 sum -16.464 1.769 -11.534 20.180 Atomic orbital electron populations 1.21964 0.91507 1.04784 1.05165 1.20812 0.90755 0.82859 0.74878 1.90717 1.70665 1.31132 1.49605 1.47456 1.05384 1.07222 1.73315 1.21927 0.97026 0.84714 1.02823 1.21304 0.81314 1.05438 0.94868 1.21084 0.82245 0.75830 0.92100 1.90724 1.60157 1.47363 1.40799 1.45874 1.06846 1.76207 1.08127 1.19857 0.94683 0.88497 0.84087 0.87043 1.22751 0.91908 1.00874 0.99890 1.22490 0.95882 0.82880 0.97789 1.22663 0.89700 0.95202 0.93309 1.45619 1.25352 1.59566 1.02375 1.18862 1.01688 1.27638 0.86831 0.89940 1.24803 0.98224 1.00398 0.96587 1.69783 1.29113 1.42660 1.15017 0.86145 0.80354 0.78526 0.80428 1.21407 1.20994 1.20883 1.22297 0.85096 1.01870 0.87268 1.45630 1.14322 1.09867 1.41050 1.22512 1.01604 0.83538 1.05017 1.22165 0.91660 1.00085 1.05903 1.69729 1.31414 0.99143 1.18551 1.24445 0.84958 0.97504 1.04052 0.89922 0.88661 0.88803 0.91684 0.90605 0.90682 0.86994 0.87350 0.76361 0.87440 0.88678 0.93307 0.92670 0.93319 0.93498 0.90095 0.81109 0.81455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.18 10.00 36.01 0.36 -0.82 16 2 C 0.52 5.79 7.77 -10.98 -0.09 5.71 16 3 O -0.54 -8.33 16.73 5.56 0.09 -8.24 16 4 N -0.60 -5.85 2.36 -182.96 -0.43 -6.28 16 5 C 0.08 0.52 10.01 59.84 0.60 1.12 16 6 C 0.10 0.92 5.89 -5.19 -0.03 0.89 16 7 C 0.50 6.68 7.89 -10.99 -0.09 6.59 16 8 O -0.52 -9.17 16.14 5.55 0.09 -9.08 16 9 N -0.72 -8.45 5.16 -53.56 -0.28 -8.73 16 10 C 0.24 3.39 3.23 -67.67 -0.22 3.18 16 11 H 0.11 1.73 7.66 -51.93 -0.40 1.34 16 12 C -0.11 -1.45 6.24 -25.60 -0.16 -1.61 16 13 C 0.10 1.69 1.64 -133.41 -0.22 1.47 16 14 C 0.12 2.28 8.18 -7.89 -0.06 2.21 16 15 N -0.60 -14.47 3.79 -184.69 -0.70 -15.17 16 16 C -0.22 -5.96 10.74 -15.06 -0.16 -6.12 16 17 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 18 C 0.00 -0.08 5.50 -17.43 -0.10 -0.18 16 19 N -0.92 -25.85 11.51 55.49 0.64 -25.21 16 20 Si 0.92 21.37 29.55 -169.99 -5.02 16.34 16 21 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 24 C 0.16 3.44 6.94 -7.77 -0.05 3.38 16 25 N -0.43 -8.09 3.42 -100.95 -0.34 -8.44 16 26 C 0.01 0.15 12.03 -16.43 -0.20 -0.05 16 27 C -0.05 -0.91 11.86 -17.93 -0.21 -1.13 16 28 N -0.47 -9.13 11.25 -10.49 -0.12 -9.25 16 29 C 0.15 2.78 8.22 -154.56 -1.27 1.51 16 30 H 0.08 0.37 5.49 -51.93 -0.29 0.09 16 31 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.08 0.29 6.14 -51.93 -0.32 -0.03 16 35 H 0.07 0.40 7.83 -51.93 -0.41 0.00 16 36 H 0.11 0.98 7.49 -51.93 -0.39 0.59 16 37 H 0.11 0.68 7.86 -51.93 -0.41 0.28 16 38 H 0.40 3.38 8.39 -40.82 -0.34 3.03 16 39 H 0.11 1.12 7.87 -51.93 -0.41 0.71 16 40 H 0.09 1.02 7.81 -51.93 -0.41 0.62 16 41 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.06 0.95 7.98 -51.93 -0.41 0.53 16 43 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 44 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 45 H 0.08 1.99 7.15 -51.93 -0.37 1.62 16 46 H 0.17 3.45 8.06 -52.48 -0.42 3.02 16 47 H 0.17 2.53 8.06 -52.49 -0.42 2.11 16 LS Contribution 392.00 15.07 5.91 5.91 Total: -1.00 -38.05 392.00 -8.72 -46.76 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -6.65 Total: 5.23 kcal Atomic # 6 Polarization: 18.04 SS G_CDS: -1.90 Total: 16.14 kcal Atomic # 7 Polarization: -71.84 SS G_CDS: -1.23 Total: -73.07 kcal Atomic # 8 Polarization: -17.50 SS G_CDS: 0.18 Total: -17.32 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -38.05 -8.72 -46.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101610255.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.775 kcal (2) G-P(sol) polarization free energy of solvation -38.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.764 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds