Wall clock time and date at job start Wed Apr 1 2020 05:06:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21282 * 119.99912 * 2 1 4 4 N 1.34779 * 119.99915 * 180.02562 * 2 1 3 5 5 C 1.46495 * 119.99792 * 355.30323 * 4 2 1 6 6 C 1.46502 * 120.00165 * 175.31050 * 4 2 1 7 7 C 1.50697 * 109.47325 * 89.99299 * 6 4 2 8 8 O 1.21288 * 120.00184 * 0.02562 * 7 6 4 9 9 N 1.34773 * 120.00214 * 180.02562 * 7 6 4 10 10 C 1.46497 * 120.00071 * 180.02562 * 9 7 6 11 11 H 1.08999 * 110.41703 * 323.96231 * 10 9 7 12 12 C 1.54777 * 110.56202 * 201.40054 * 10 9 7 13 13 C 1.53385 * 101.45111 * 217.03971 * 12 10 9 14 14 C 1.52456 * 115.84804 * 253.15818 * 13 12 10 15 15 N 1.47262 * 87.71595 * 218.49132 * 14 13 12 16 16 C 1.36936 * 135.93754 * 206.19694 * 15 14 13 17 17 H 1.07995 * 120.00226 * 359.97438 * 16 15 14 18 18 C 1.38814 * 119.99673 * 179.97438 * 16 15 14 19 19 N 1.31623 * 120.00148 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99824 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.47042 * 180.02562 * 20 18 16 22 22 H 1.48498 * 109.47091 * 300.00072 * 20 18 16 23 23 H 1.48489 * 109.47469 * 60.00409 * 20 18 16 24 24 C 1.47265 * 88.11960 * 26.45087 * 15 14 13 25 25 N 1.46043 * 106.81160 * 24.81104 * 13 12 10 26 26 C 1.37275 * 142.31551 * 163.61617 * 25 13 12 27 27 C 1.34514 * 106.92884 * 180.11848 * 26 25 13 28 28 N 1.33979 * 108.04692 * 359.97438 * 27 26 25 29 29 C 1.30844 * 109.35920 * 359.97438 * 28 27 26 30 30 H 1.09000 * 109.47298 * 185.21229 * 1 2 3 31 31 H 1.09004 * 109.46519 * 305.20839 * 1 2 3 32 32 H 1.08998 * 109.47224 * 65.20358 * 1 2 3 33 33 H 1.08998 * 109.47634 * 275.46661 * 5 4 2 34 34 H 1.08999 * 109.47395 * 35.47198 * 5 4 2 35 35 H 1.09004 * 109.46710 * 155.46927 * 5 4 2 36 36 H 1.09000 * 109.46865 * 329.99723 * 6 4 2 37 37 H 1.08996 * 109.47260 * 209.99758 * 6 4 2 38 38 H 0.97004 * 119.99715 * 359.97438 * 9 7 6 39 39 H 1.09003 * 111.01932 * 99.00323 * 12 10 9 40 40 H 1.08999 * 111.03444 * 335.08500 * 12 10 9 41 41 H 1.09001 * 113.50810 * 103.78304 * 14 13 12 42 42 H 1.09001 * 113.57027 * 333.21165 * 14 13 12 43 43 H 0.97001 * 120.00149 * 179.97438 * 19 18 16 44 44 H 1.09004 * 113.50688 * 88.25357 * 24 15 14 45 45 H 1.08992 * 113.51151 * 218.83123 * 24 15 14 46 46 H 1.08007 * 126.53141 * 0.11845 * 26 25 13 47 47 H 1.08001 * 125.97691 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.4520 -2.4338 0.1028 6 6 3.6422 -1.1694 -0.1042 7 6 4.2439 -1.1125 1.2762 8 8 3.5231 -1.0744 2.2509 9 7 5.5831 -1.1039 1.4278 10 6 6.1680 -1.0492 2.7699 11 1 5.5613 -0.4227 3.4238 12 6 7.6211 -0.5197 2.7084 13 6 8.3006 -1.3688 3.7900 14 6 8.6464 -0.6428 5.0852 15 7 9.8938 -1.4246 5.1214 16 6 10.7555 -1.8583 6.0933 17 1 10.5644 -1.6211 7.1294 18 6 11.8745 -2.6029 5.7467 19 7 12.1077 -2.8916 4.4838 20 14 13.0504 -3.1940 7.0724 21 1 14.1568 -3.9615 6.4463 22 1 13.6083 -2.0238 7.7967 23 1 12.3213 -4.0660 8.0278 24 6 9.8128 -1.5306 3.6548 25 7 7.5173 -2.5946 3.9188 26 6 7.5720 -3.8711 4.4209 27 6 6.3931 -4.4540 4.1382 28 7 5.6363 -3.5636 3.4829 29 6 6.3017 -2.4451 3.3474 30 1 -0.3634 -1.0234 0.0934 31 1 -0.3632 0.5925 0.8397 32 1 -0.3633 0.4310 -0.9329 33 1 1.2591 -2.6575 1.1520 34 1 0.5054 -2.3529 -0.4315 35 1 2.0493 -3.2334 -0.3353 36 1 3.9669 -0.3014 -0.6781 37 1 3.9695 -2.0799 -0.6061 38 1 6.1596 -1.1347 0.6483 39 1 7.6620 0.5401 2.9599 40 1 8.0640 -0.7052 1.7298 41 1 7.9665 -0.8705 5.9062 42 1 8.8076 0.4274 4.9554 43 1 12.8899 -3.4117 4.2416 44 1 10.2935 -0.7037 3.1319 45 1 10.1147 -2.5054 3.2719 46 1 8.4031 -4.3214 4.9434 47 1 6.1068 -5.4633 4.3946 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001101610255.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:06:58 Heat of formation + Delta-G solvation = 59.310865 kcal Electronic energy + Delta-G solvation = -30981.315339 eV Core-core repulsion = 26781.500128 eV Total energy + Delta-G solvation = -4199.815211 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -43.63090 -41.26043 -40.20171 -39.92646 -36.98888 -36.32722 -34.89609 -33.62882 -32.24979 -31.33632 -29.93284 -29.19803 -28.52719 -27.05993 -26.76982 -25.72167 -23.39941 -22.90763 -22.23015 -21.15797 -20.26410 -20.20809 -18.87370 -18.48725 -18.11061 -17.60113 -17.19471 -17.11420 -16.60542 -16.29075 -16.06884 -15.84442 -15.61295 -15.51179 -15.06551 -14.96969 -14.66728 -14.58458 -14.31029 -14.01866 -13.93491 -13.67454 -13.54870 -13.31955 -13.30938 -13.12217 -12.95752 -12.89331 -12.81508 -12.56058 -12.44352 -11.97633 -11.80851 -11.52308 -11.19068 -11.07825 -10.92067 -10.90674 -10.40977 -10.32137 -9.71661 -9.35328 -9.06429 -8.00489 -5.34253 1.02929 1.41844 1.43436 1.49786 1.49944 1.61747 1.79747 1.93874 2.12204 2.36830 2.44683 2.84103 3.17206 3.24858 3.28097 3.49314 3.70162 3.74385 3.89734 4.07107 4.18129 4.22775 4.26420 4.32847 4.41520 4.47497 4.57942 4.58727 4.64325 4.66598 4.71589 4.73456 4.78745 4.82144 4.97947 5.04823 5.13237 5.14185 5.33509 5.35671 5.37855 5.49553 5.78814 5.88452 6.17452 6.35443 6.51926 6.80150 7.13042 7.14711 7.28247 7.48890 8.43262 9.15962 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.026880 B = 0.002367 C = 0.002272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.431000 B =11828.488960 C =12321.102786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.505 3.495 3 O -0.596 6.596 4 N -0.602 5.602 5 C 0.073 3.927 6 C 0.098 3.902 7 C 0.498 3.502 8 O -0.567 6.567 9 N -0.704 5.704 10 C 0.240 3.760 11 H 0.102 0.898 12 C -0.098 4.098 13 C 0.112 3.888 14 C 0.118 3.882 15 N -0.636 5.636 16 C -0.231 4.231 17 H 0.080 0.920 18 C -0.057 4.057 19 N -0.947 5.947 20 Si 0.976 3.024 21 H -0.292 1.292 22 H -0.277 1.277 23 H -0.280 1.280 24 C 0.164 3.836 25 N -0.439 5.439 26 C -0.024 4.024 27 C -0.040 4.040 28 N -0.495 5.495 29 C 0.159 3.841 30 H 0.107 0.893 31 H 0.091 0.909 32 H 0.112 0.888 33 H 0.045 0.955 34 H 0.108 0.892 35 H 0.091 0.909 36 H 0.121 0.879 37 H 0.145 0.855 38 H 0.421 0.579 39 H 0.142 0.858 40 H 0.123 0.877 41 H 0.037 0.963 42 H 0.090 0.910 43 H 0.250 0.750 44 H 0.060 0.940 45 H 0.042 0.958 46 H 0.153 0.847 47 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.409 2.607 -14.707 24.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.296 3.704 3 O -0.477 6.477 4 N -0.334 5.334 5 C -0.069 4.069 6 C -0.029 4.029 7 C 0.285 3.715 8 O -0.444 6.444 9 N -0.358 5.358 10 C 0.132 3.868 11 H 0.120 0.880 12 C -0.137 4.137 13 C 0.025 3.975 14 C -0.007 4.007 15 N -0.362 5.362 16 C -0.359 4.359 17 H 0.098 0.902 18 C -0.250 4.250 19 N -0.595 5.595 20 Si 0.804 3.196 21 H -0.218 1.218 22 H -0.203 1.203 23 H -0.206 1.206 24 C 0.038 3.962 25 N -0.121 5.121 26 C -0.157 4.157 27 C -0.188 4.188 28 N -0.215 5.215 29 C -0.105 4.105 30 H 0.126 0.874 31 H 0.109 0.891 32 H 0.130 0.870 33 H 0.063 0.937 34 H 0.126 0.874 35 H 0.110 0.890 36 H 0.138 0.862 37 H 0.163 0.837 38 H 0.259 0.741 39 H 0.160 0.840 40 H 0.141 0.859 41 H 0.055 0.945 42 H 0.107 0.893 43 H 0.059 0.941 44 H 0.077 0.923 45 H 0.060 0.940 46 H 0.170 0.830 47 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -19.917 2.870 -14.070 24.554 hybrid contribution 2.422 -0.735 1.403 2.894 sum -17.495 2.135 -12.667 21.705 Atomic orbital electron populations 1.22006 0.88390 1.06532 1.05932 1.21630 0.92480 0.82483 0.73787 1.90681 1.71956 1.32907 1.52113 1.47679 1.05705 1.07923 1.72093 1.22129 0.98669 0.83821 1.02239 1.21488 0.81321 1.07577 0.92516 1.21857 0.82216 0.74377 0.93090 1.90704 1.61304 1.49717 1.42704 1.45749 1.06911 1.75325 1.07800 1.19831 0.95680 0.86143 0.85161 0.87977 1.22871 0.89754 1.01588 0.99457 1.22393 0.93986 0.82788 0.98304 1.22887 0.87373 0.96573 0.93907 1.45878 1.26327 1.60782 1.03223 1.19135 1.01958 1.27162 0.87644 0.90242 1.25529 0.99929 1.01158 0.98423 1.69947 1.29322 1.43696 1.16514 0.85199 0.78235 0.78025 0.78152 1.21844 1.20262 1.20595 1.22228 0.87931 1.00165 0.85914 1.45813 1.15024 1.09977 1.41249 1.22450 1.01890 0.84674 1.06726 1.22572 0.90786 1.00907 1.04499 1.69773 1.32004 1.00037 1.19688 1.25224 0.84147 0.98368 1.02755 0.87434 0.89085 0.86982 0.93652 0.87412 0.89027 0.86156 0.83740 0.74111 0.84027 0.85891 0.94466 0.89268 0.94057 0.92271 0.93993 0.82956 0.79006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.94 10.00 71.24 0.71 -1.23 16 2 C 0.51 10.65 7.77 87.66 0.68 11.33 16 3 O -0.60 -18.03 16.73 -3.03 -0.05 -18.08 16 4 N -0.60 -10.50 2.36 -851.15 -2.01 -12.51 16 5 C 0.07 0.79 10.01 127.77 1.28 2.06 16 6 C 0.10 1.60 5.89 85.63 0.50 2.10 16 7 C 0.50 12.39 7.89 87.66 0.69 13.08 16 8 O -0.57 -19.82 16.14 -3.05 -0.05 -19.87 16 9 N -0.70 -14.84 5.16 -441.74 -2.28 -17.12 16 10 C 0.24 6.41 3.23 45.16 0.15 6.56 16 11 H 0.10 3.02 7.66 -2.39 -0.02 3.00 16 12 C -0.10 -2.16 6.24 31.33 0.20 -1.97 16 13 C 0.11 3.79 1.64 3.92 0.01 3.79 16 14 C 0.12 4.43 8.18 83.47 0.68 5.11 16 15 N -0.64 -30.70 3.79 -738.24 -2.80 -33.50 16 16 C -0.23 -12.54 10.74 84.03 0.90 -11.64 16 17 H 0.08 4.21 7.83 -2.91 -0.02 4.19 16 18 C -0.06 -3.11 5.50 84.86 0.47 -2.64 16 19 N -0.95 -54.60 11.51 21.65 0.25 -54.35 16 20 Si 0.98 44.69 29.55 68.60 2.03 46.71 16 21 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 22 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 23 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 24 C 0.16 6.96 6.94 83.55 0.58 7.54 16 25 N -0.44 -16.58 3.42 -473.30 -1.62 -18.19 16 26 C -0.02 -0.95 12.03 82.99 1.00 0.05 16 27 C -0.04 -1.46 11.86 83.51 0.99 -0.47 16 28 N -0.50 -19.01 11.25 -187.09 -2.11 -21.11 16 29 C 0.16 5.60 8.22 138.30 1.14 6.73 16 30 H 0.11 0.63 5.49 -2.39 -0.01 0.62 16 31 H 0.09 1.15 8.14 -2.38 -0.02 1.13 16 32 H 0.11 0.87 8.14 -2.39 -0.02 0.86 16 33 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.11 0.44 6.14 -2.39 -0.01 0.43 16 35 H 0.09 0.69 7.83 -2.38 -0.02 0.67 16 36 H 0.12 1.82 7.49 -2.39 -0.02 1.80 16 37 H 0.15 1.29 7.86 -2.39 -0.02 1.27 16 38 H 0.42 5.62 8.39 -92.70 -0.78 4.85 16 39 H 0.14 2.28 7.87 -2.39 -0.02 2.26 16 40 H 0.12 2.12 7.81 -2.39 -0.02 2.10 16 41 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.09 2.79 7.98 -2.39 -0.02 2.77 16 43 H 0.25 14.16 8.31 -92.71 -0.77 13.39 16 44 H 0.06 2.36 8.14 -2.38 -0.02 2.34 16 45 H 0.04 2.11 7.15 -2.39 -0.02 2.10 16 46 H 0.15 6.57 8.06 -2.91 -0.02 6.54 16 47 H 0.19 5.71 8.06 -2.91 -0.02 5.69 16 Total: -1.00 -87.16 392.00 1.57 -85.59 By element: Atomic # 1 Polarization: 21.78 SS G_CDS: 0.23 Total: 22.01 kcal Atomic # 6 Polarization: 30.45 SS G_CDS: 9.97 Total: 40.42 kcal Atomic # 7 Polarization: -146.23 SS G_CDS: -10.56 Total: -156.79 kcal Atomic # 8 Polarization: -37.84 SS G_CDS: -0.10 Total: -37.95 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.71 kcal Total: -87.16 1.57 -85.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101610255.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.902 kcal (2) G-P(sol) polarization free energy of solvation -87.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds