Wall clock time and date at job start Wed Apr 1 2020 05:07:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.21279 * 120.00111 * 2 1 4 4 N 1.34777 * 119.99663 * 179.97438 * 2 1 3 5 5 C 1.46500 * 119.99606 * 174.82833 * 4 2 1 6 6 C 1.46496 * 120.00227 * 354.83147 * 4 2 1 7 7 C 1.50700 * 109.46974 * 89.99785 * 6 4 2 8 8 O 1.21282 * 120.00465 * 0.02562 * 7 6 4 9 9 N 1.34775 * 119.99911 * 179.97438 * 7 6 4 10 10 C 1.46495 * 120.00209 * 179.97438 * 9 7 6 11 11 H 1.08998 * 110.51860 * 36.10675 * 10 9 7 12 12 C 1.54744 * 110.46539 * 158.66598 * 10 9 7 13 13 C 1.53504 * 101.49647 * 143.01268 * 12 10 9 14 14 C 1.53047 * 115.28513 * 105.28166 * 13 12 10 15 15 N 1.47754 * 85.82343 * 93.67546 * 14 13 12 16 16 C 1.36934 * 134.40966 * 203.99054 * 15 14 13 17 17 H 1.08002 * 119.99929 * 179.97438 * 16 15 14 18 18 C 1.38818 * 119.99947 * 359.96900 * 16 15 14 19 19 N 1.31615 * 120.00229 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99595 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47435 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.46940 * 120.00588 * 20 18 16 23 23 H 1.48501 * 109.46840 * 239.99909 * 20 18 16 24 24 C 1.47757 * 91.17609 * 23.96767 * 15 14 13 25 25 N 1.46157 * 106.64754 * 335.07531 * 13 12 10 26 26 C 1.37269 * 142.21988 * 196.44905 * 25 13 12 27 27 C 1.34520 * 106.91362 * 179.97438 * 26 25 13 28 28 N 1.33986 * 108.04910 * 0.02562 * 27 26 25 29 29 C 1.30856 * 109.34526 * 0.02562 * 28 27 26 30 30 H 1.08997 * 109.46918 * 274.82180 * 1 2 3 31 31 H 1.09007 * 109.46700 * 34.81950 * 1 2 3 32 32 H 1.09003 * 109.47112 * 154.82036 * 1 2 3 33 33 H 1.08996 * 109.47424 * 275.05522 * 5 4 2 34 34 H 1.08995 * 109.47380 * 35.05928 * 5 4 2 35 35 H 1.09005 * 109.46935 * 155.05639 * 5 4 2 36 36 H 1.09003 * 109.47000 * 329.99738 * 6 4 2 37 37 H 1.08997 * 109.47094 * 209.99892 * 6 4 2 38 38 H 0.97004 * 120.00348 * 0.02562 * 9 7 6 39 39 H 1.08998 * 111.01932 * 24.95877 * 12 10 9 40 40 H 1.08998 * 111.01471 * 261.06506 * 12 10 9 41 41 H 1.08998 * 113.81408 * 207.89993 * 14 13 12 42 42 H 1.09002 * 113.81271 * 339.44928 * 14 13 12 43 43 H 0.96996 * 119.99688 * 180.02562 * 19 18 16 44 44 H 1.08996 * 113.81245 * 221.79759 * 24 15 14 45 45 H 1.08998 * 113.80973 * 90.25671 * 24 15 14 46 46 H 1.07994 * 126.54286 * 359.96151 * 26 25 13 47 47 H 1.08004 * 125.97921 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6414 -1.1699 -0.1138 6 6 1.4528 -2.4333 0.1154 7 6 1.0923 -2.9320 -1.2603 8 8 1.4124 -2.2931 -2.2402 9 7 0.4150 -4.0886 -1.4017 10 6 0.0640 -4.5731 -2.7389 11 1 0.8570 -4.3409 -3.4497 12 6 -0.2065 -6.0965 -2.7086 13 6 -1.3631 -6.2218 -3.7101 14 6 -0.9877 -6.8109 -5.0718 15 7 -1.3941 -8.1114 -4.5003 16 6 -1.0841 -9.4169 -4.7734 17 1 -1.5291 -10.2106 -4.1916 18 6 -0.1981 -9.7202 -5.7981 19 7 0.3444 -8.7530 -6.5068 20 14 0.2241 -11.5013 -6.1710 21 1 -0.5136 -12.3907 -5.2383 22 1 -0.1636 -11.8197 -7.5687 23 1 1.6848 -11.7093 -6.0029 24 6 -2.2681 -7.4402 -3.5160 25 7 -2.0343 -4.9238 -3.7390 26 6 -3.2006 -4.3139 -4.1293 27 6 -3.0875 -3.0122 -3.8095 28 7 -1.8886 -2.8271 -3.2407 29 6 -1.2496 -3.9681 -3.1951 30 1 -0.3633 0.0864 1.0240 31 1 -0.3633 0.8437 -0.5868 32 1 -0.3633 -0.9300 -0.4372 33 1 3.9236 -1.1266 -1.1658 34 1 4.0482 -0.3034 0.4074 35 1 4.0391 -2.0817 0.3318 36 1 0.5432 -2.2780 0.6955 37 1 2.0815 -3.1698 0.6157 38 1 0.1593 -4.5999 -0.6180 39 1 -0.5138 -6.4193 -1.7139 40 1 0.6661 -6.6552 -3.0471 41 1 -1.6242 -6.4711 -5.8889 42 1 0.0756 -6.7443 -5.3022 43 1 0.9632 -8.9650 -7.2230 44 1 -2.2172 -7.8713 -2.5162 45 1 -3.2896 -7.2897 -3.8651 46 1 -4.0472 -4.7886 -4.6028 47 1 -3.8328 -2.2496 -3.9813 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001101610256.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:07:15 Heat of formation + Delta-G solvation = 80.142815 kcal Electronic energy + Delta-G solvation = -31129.497271 eV Core-core repulsion = 26930.585401 eV Total energy + Delta-G solvation = -4198.911870 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -42.33920 -40.41029 -39.12108 -38.60711 -35.90869 -35.24746 -33.47495 -31.91114 -30.99262 -30.56520 -28.63984 -28.22051 -27.29024 -25.94152 -25.42092 -24.35664 -22.27993 -21.44305 -21.19395 -19.81933 -19.45292 -18.74593 -17.71384 -17.25172 -17.11921 -16.68394 -16.12155 -15.81824 -15.41221 -15.07733 -14.95816 -14.60446 -14.18451 -14.13825 -13.84813 -13.71165 -13.53136 -13.41509 -13.21336 -13.00663 -12.79321 -12.70049 -12.41511 -12.20910 -12.14441 -12.02114 -11.87620 -11.63499 -11.19734 -11.07971 -10.98672 -10.64747 -10.26694 -10.22392 -10.02365 -9.86291 -9.60314 -9.33238 -9.07944 -9.05167 -8.89685 -8.10184 -7.22987 -6.02428 -3.38227 2.22120 2.40740 2.48575 2.68656 2.96315 3.16034 3.24851 3.31103 3.33316 3.50505 4.05078 4.22877 4.36649 4.38893 4.54210 4.62472 4.74179 4.82558 4.87413 4.88649 5.04306 5.20281 5.23361 5.24080 5.33409 5.37913 5.42584 5.58801 5.68668 5.77397 5.77420 5.81455 5.92827 5.99985 6.10397 6.13025 6.14392 6.27936 6.68931 6.76006 6.86856 7.03416 7.12681 7.19359 7.31593 7.41947 7.68968 7.96597 8.10683 8.43250 8.76980 9.43602 10.23332 11.14317 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015978 B = 0.002692 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.944819 B =10398.866894 C =11564.523354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.523 3.477 3 O -0.545 6.545 4 N -0.602 5.602 5 C 0.086 3.914 6 C 0.093 3.907 7 C 0.492 3.508 8 O -0.508 6.508 9 N -0.716 5.716 10 C 0.232 3.768 11 H 0.117 0.883 12 C -0.094 4.094 13 C 0.101 3.899 14 C 0.171 3.829 15 N -0.600 5.600 16 C -0.232 4.232 17 H 0.085 0.915 18 C -0.001 4.001 19 N -0.917 5.917 20 Si 0.916 3.084 21 H -0.278 1.278 22 H -0.289 1.289 23 H -0.287 1.287 24 C 0.125 3.875 25 N -0.452 5.452 26 C -0.026 4.026 27 C -0.036 4.036 28 N -0.471 5.471 29 C 0.166 3.834 30 H 0.092 0.908 31 H 0.095 0.905 32 H 0.082 0.918 33 H 0.059 0.941 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.112 0.888 37 H 0.113 0.887 38 H 0.402 0.598 39 H 0.090 0.910 40 H 0.116 0.884 41 H 0.036 0.964 42 H 0.087 0.913 43 H 0.258 0.742 44 H 0.057 0.943 45 H 0.041 0.959 46 H 0.167 0.833 47 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.992 8.469 15.580 17.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.313 3.687 3 O -0.422 6.422 4 N -0.335 5.335 5 C -0.056 4.056 6 C -0.035 4.035 7 C 0.276 3.724 8 O -0.381 6.381 9 N -0.369 5.369 10 C 0.125 3.875 11 H 0.134 0.866 12 C -0.133 4.133 13 C 0.016 3.984 14 C 0.045 3.955 15 N -0.327 5.327 16 C -0.359 4.359 17 H 0.103 0.897 18 C -0.199 4.199 19 N -0.563 5.563 20 Si 0.746 3.254 21 H -0.203 1.203 22 H -0.215 1.215 23 H -0.214 1.214 24 C -0.002 4.002 25 N -0.134 5.134 26 C -0.160 4.160 27 C -0.185 4.185 28 N -0.190 5.190 29 C -0.098 4.098 30 H 0.110 0.890 31 H 0.114 0.886 32 H 0.101 0.899 33 H 0.078 0.922 34 H 0.094 0.906 35 H 0.088 0.912 36 H 0.129 0.871 37 H 0.131 0.869 38 H 0.237 0.763 39 H 0.108 0.892 40 H 0.135 0.865 41 H 0.054 0.946 42 H 0.105 0.895 43 H 0.068 0.932 44 H 0.076 0.924 45 H 0.059 0.941 46 H 0.184 0.816 47 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -0.017 9.781 14.885 17.811 hybrid contribution -0.715 -2.139 -0.652 2.348 sum -0.733 7.643 14.233 16.172 Atomic orbital electron populations 1.21948 0.91476 1.05675 1.04348 1.20792 0.90711 0.82723 0.74479 1.90696 1.70894 1.30880 1.49706 1.47433 1.07507 1.05072 1.73479 1.21675 0.78753 1.02684 1.02486 1.21517 0.99742 0.87515 0.94750 1.21223 0.78058 0.80876 0.92260 1.90791 1.51996 1.55255 1.40100 1.45897 1.58214 1.24473 1.08359 1.19963 0.90846 0.91677 0.85063 0.86577 1.22576 0.98750 0.92703 0.99290 1.23765 0.93515 0.79421 1.01669 1.22505 1.01436 0.82645 0.88926 1.45795 1.48598 1.01601 1.36664 1.19017 1.22126 0.80468 1.14265 0.89683 1.24836 0.99318 0.98049 0.97666 1.69790 1.33044 1.30331 1.23098 0.85998 0.78028 0.83397 0.77996 1.20306 1.21544 1.21406 1.22705 0.93899 0.88307 0.95279 1.46559 1.12980 1.10601 1.43255 1.22352 0.90912 0.94073 1.08643 1.22219 0.96205 0.94405 1.05668 1.69782 1.05559 1.23772 1.19900 1.24494 0.95962 0.85786 1.03547 0.88963 0.88577 0.89905 0.92201 0.90595 0.91155 0.87054 0.86940 0.76318 0.89181 0.86525 0.94647 0.89488 0.93217 0.92446 0.94131 0.81596 0.81400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.70 9.35 36.01 0.34 -1.36 16 2 C 0.52 6.61 7.77 -10.98 -0.09 6.52 16 3 O -0.54 -8.93 16.73 5.56 0.09 -8.83 16 4 N -0.60 -6.23 2.36 -182.96 -0.43 -6.66 16 5 C 0.09 0.81 10.46 59.85 0.63 1.44 16 6 C 0.09 0.66 5.51 -5.20 -0.03 0.63 16 7 C 0.49 5.52 7.15 -10.99 -0.08 5.45 16 8 O -0.51 -8.34 16.14 5.56 0.09 -8.25 16 9 N -0.72 -7.13 5.16 -53.58 -0.28 -7.41 16 10 C 0.23 3.16 3.23 -67.70 -0.22 2.94 16 11 H 0.12 1.80 7.67 -51.93 -0.40 1.40 16 12 C -0.09 -1.25 6.17 -25.55 -0.16 -1.41 16 13 C 0.10 1.68 1.56 -136.72 -0.21 1.47 16 14 C 0.17 3.65 6.94 -3.33 -0.02 3.63 16 15 N -0.60 -13.56 3.69 -182.63 -0.67 -14.24 16 16 C -0.23 -5.85 10.70 -15.06 -0.16 -6.01 16 17 H 0.09 2.07 7.83 -52.49 -0.41 1.66 16 18 C 0.00 -0.03 5.50 -17.43 -0.10 -0.12 16 19 N -0.92 -25.10 11.39 55.49 0.63 -24.47 16 20 Si 0.92 20.50 29.55 -169.99 -5.02 15.47 16 21 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 22 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 24 C 0.12 2.22 8.46 -3.35 -0.03 2.19 16 25 N -0.45 -7.33 3.37 -103.51 -0.35 -7.68 16 26 C -0.03 -0.39 12.03 -16.43 -0.20 -0.59 16 27 C -0.04 -0.55 11.86 -17.93 -0.21 -0.76 16 28 N -0.47 -8.20 11.25 -10.49 -0.12 -8.31 16 29 C 0.17 2.71 8.22 -154.60 -1.27 1.44 16 30 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 32 H 0.08 0.82 6.01 -51.93 -0.31 0.51 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.08 0.75 7.51 -51.93 -0.39 0.36 16 35 H 0.07 0.44 7.84 -51.93 -0.41 0.03 16 36 H 0.11 0.53 6.70 -51.93 -0.35 0.18 16 37 H 0.11 0.43 7.86 -51.93 -0.41 0.02 16 38 H 0.40 2.54 8.38 -40.82 -0.34 2.20 16 39 H 0.09 0.95 7.76 -51.93 -0.40 0.55 16 40 H 0.12 1.67 7.92 -51.93 -0.41 1.25 16 41 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.09 2.04 7.08 -51.93 -0.37 1.67 16 43 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 44 H 0.06 0.92 8.09 -51.93 -0.42 0.50 16 45 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 46 H 0.17 2.13 8.06 -52.49 -0.42 1.70 16 47 H 0.17 2.04 8.06 -52.48 -0.42 1.62 16 LS Contribution 391.68 15.07 5.90 5.90 Total: -1.00 -36.28 391.68 -8.68 -44.96 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -6.71 Total: 4.07 kcal Atomic # 6 Polarization: 17.26 SS G_CDS: -1.81 Total: 15.45 kcal Atomic # 7 Polarization: -67.55 SS G_CDS: -1.22 Total: -68.77 kcal Atomic # 8 Polarization: -17.27 SS G_CDS: 0.18 Total: -17.08 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -36.28 -8.68 -44.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101610256.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.101 kcal (2) G-P(sol) polarization free energy of solvation -36.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.958 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds