Wall clock time and date at job start Wed Apr 1 2020 05:07:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.21279 * 120.00111 * 2 1 4 4 N 1.34777 * 119.99663 * 179.97438 * 2 1 3 5 5 C 1.46500 * 119.99606 * 174.82833 * 4 2 1 6 6 C 1.46496 * 120.00227 * 354.83147 * 4 2 1 7 7 C 1.50700 * 109.46974 * 89.99785 * 6 4 2 8 8 O 1.21282 * 120.00465 * 0.02562 * 7 6 4 9 9 N 1.34775 * 119.99911 * 179.97438 * 7 6 4 10 10 C 1.46495 * 120.00209 * 179.97438 * 9 7 6 11 11 H 1.08998 * 110.51860 * 36.10675 * 10 9 7 12 12 C 1.54744 * 110.46539 * 158.66598 * 10 9 7 13 13 C 1.53504 * 101.49647 * 143.01268 * 12 10 9 14 14 C 1.53047 * 115.28513 * 105.28166 * 13 12 10 15 15 N 1.47754 * 85.82343 * 93.67546 * 14 13 12 16 16 C 1.36934 * 134.40966 * 203.99054 * 15 14 13 17 17 H 1.08002 * 119.99929 * 179.97438 * 16 15 14 18 18 C 1.38818 * 119.99947 * 359.96900 * 16 15 14 19 19 N 1.31615 * 120.00229 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99595 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47435 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.46940 * 120.00588 * 20 18 16 23 23 H 1.48501 * 109.46840 * 239.99909 * 20 18 16 24 24 C 1.47757 * 91.17609 * 23.96767 * 15 14 13 25 25 N 1.46157 * 106.64754 * 335.07531 * 13 12 10 26 26 C 1.37269 * 142.21988 * 196.44905 * 25 13 12 27 27 C 1.34520 * 106.91362 * 179.97438 * 26 25 13 28 28 N 1.33986 * 108.04910 * 0.02562 * 27 26 25 29 29 C 1.30856 * 109.34526 * 0.02562 * 28 27 26 30 30 H 1.08997 * 109.46918 * 274.82180 * 1 2 3 31 31 H 1.09007 * 109.46700 * 34.81950 * 1 2 3 32 32 H 1.09003 * 109.47112 * 154.82036 * 1 2 3 33 33 H 1.08996 * 109.47424 * 275.05522 * 5 4 2 34 34 H 1.08995 * 109.47380 * 35.05928 * 5 4 2 35 35 H 1.09005 * 109.46935 * 155.05639 * 5 4 2 36 36 H 1.09003 * 109.47000 * 329.99738 * 6 4 2 37 37 H 1.08997 * 109.47094 * 209.99892 * 6 4 2 38 38 H 0.97004 * 120.00348 * 0.02562 * 9 7 6 39 39 H 1.08998 * 111.01932 * 24.95877 * 12 10 9 40 40 H 1.08998 * 111.01471 * 261.06506 * 12 10 9 41 41 H 1.08998 * 113.81408 * 207.89993 * 14 13 12 42 42 H 1.09002 * 113.81271 * 339.44928 * 14 13 12 43 43 H 0.96996 * 119.99688 * 180.02562 * 19 18 16 44 44 H 1.08996 * 113.81245 * 221.79759 * 24 15 14 45 45 H 1.08998 * 113.80973 * 90.25671 * 24 15 14 46 46 H 1.07994 * 126.54286 * 359.96151 * 26 25 13 47 47 H 1.08004 * 125.97921 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6414 -1.1699 -0.1138 6 6 1.4528 -2.4333 0.1154 7 6 1.0923 -2.9320 -1.2603 8 8 1.4124 -2.2931 -2.2402 9 7 0.4150 -4.0886 -1.4017 10 6 0.0640 -4.5731 -2.7389 11 1 0.8570 -4.3409 -3.4497 12 6 -0.2065 -6.0965 -2.7086 13 6 -1.3631 -6.2218 -3.7101 14 6 -0.9877 -6.8109 -5.0718 15 7 -1.3941 -8.1114 -4.5003 16 6 -1.0841 -9.4169 -4.7734 17 1 -1.5291 -10.2106 -4.1916 18 6 -0.1981 -9.7202 -5.7981 19 7 0.3444 -8.7530 -6.5068 20 14 0.2241 -11.5013 -6.1710 21 1 -0.5136 -12.3907 -5.2383 22 1 -0.1636 -11.8197 -7.5687 23 1 1.6848 -11.7093 -6.0029 24 6 -2.2681 -7.4402 -3.5160 25 7 -2.0343 -4.9238 -3.7390 26 6 -3.2006 -4.3139 -4.1293 27 6 -3.0875 -3.0122 -3.8095 28 7 -1.8886 -2.8271 -3.2407 29 6 -1.2496 -3.9681 -3.1951 30 1 -0.3633 0.0864 1.0240 31 1 -0.3633 0.8437 -0.5868 32 1 -0.3633 -0.9300 -0.4372 33 1 3.9236 -1.1266 -1.1658 34 1 4.0482 -0.3034 0.4074 35 1 4.0391 -2.0817 0.3318 36 1 0.5432 -2.2780 0.6955 37 1 2.0815 -3.1698 0.6157 38 1 0.1593 -4.5999 -0.6180 39 1 -0.5138 -6.4193 -1.7139 40 1 0.6661 -6.6552 -3.0471 41 1 -1.6242 -6.4711 -5.8889 42 1 0.0756 -6.7443 -5.3022 43 1 0.9632 -8.9650 -7.2230 44 1 -2.2172 -7.8713 -2.5162 45 1 -3.2896 -7.2897 -3.8651 46 1 -4.0472 -4.7886 -4.6028 47 1 -3.8328 -2.2496 -3.9813 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001101610256.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:07:13 Heat of formation + Delta-G solvation = 53.993013 kcal Electronic energy + Delta-G solvation = -31130.631212 eV Core-core repulsion = 26930.585401 eV Total energy + Delta-G solvation = -4200.045811 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -43.58817 -41.30303 -40.20282 -39.96718 -36.97588 -36.26722 -34.90813 -33.56952 -32.08479 -31.40390 -29.70258 -29.52038 -28.63610 -27.00247 -26.76344 -25.71553 -23.67950 -22.67724 -22.27784 -21.02260 -20.33757 -20.07891 -18.89193 -18.56909 -18.10676 -17.63488 -17.46625 -16.89022 -16.71626 -16.30150 -16.06334 -15.83553 -15.71491 -15.31405 -15.07922 -14.84597 -14.68248 -14.47417 -14.30556 -14.02408 -13.95231 -13.59743 -13.54125 -13.32781 -13.20153 -13.16176 -12.97197 -12.84090 -12.70294 -12.64712 -12.60141 -12.07602 -11.92335 -11.65416 -11.24309 -11.00627 -10.95882 -10.85999 -10.41626 -10.31024 -9.77082 -9.30885 -9.07968 -7.97173 -5.33291 1.05334 1.42888 1.47380 1.48377 1.58224 1.60873 1.75019 1.92416 2.14010 2.40199 2.45993 2.87582 3.09249 3.28909 3.38962 3.49671 3.60937 3.62828 3.87017 4.08288 4.10962 4.20671 4.26298 4.29911 4.39923 4.50547 4.56805 4.57737 4.61309 4.66905 4.70585 4.75111 4.76259 4.87509 4.93215 5.02909 5.07455 5.13008 5.35173 5.37082 5.38945 5.49546 5.78462 5.94125 6.14218 6.21469 6.57472 6.82023 7.07096 7.19929 7.31242 7.52699 8.39281 9.19394 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.015978 B = 0.002692 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.944819 B =10398.866894 C =11564.523354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.512 3.488 3 O -0.595 6.595 4 N -0.601 5.601 5 C 0.084 3.916 6 C 0.095 3.905 7 C 0.491 3.509 8 O -0.568 6.568 9 N -0.697 5.697 10 C 0.239 3.761 11 H 0.089 0.911 12 C -0.081 4.081 13 C 0.124 3.876 14 C 0.167 3.833 15 N -0.623 5.623 16 C -0.231 4.231 17 H 0.095 0.905 18 C -0.060 4.060 19 N -0.952 5.952 20 Si 0.978 3.022 21 H -0.260 1.260 22 H -0.300 1.300 23 H -0.291 1.291 24 C 0.130 3.870 25 N -0.459 5.459 26 C -0.035 4.035 27 C -0.039 4.039 28 N -0.498 5.498 29 C 0.159 3.841 30 H 0.126 0.874 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.034 0.966 34 H 0.066 0.934 35 H 0.109 0.891 36 H 0.146 0.854 37 H 0.160 0.840 38 H 0.424 0.576 39 H 0.131 0.869 40 H 0.105 0.895 41 H 0.007 0.993 42 H 0.057 0.943 43 H 0.249 0.751 44 H 0.088 0.912 45 H 0.045 0.955 46 H 0.186 0.814 47 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.233 7.079 18.939 20.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.303 3.697 3 O -0.476 6.476 4 N -0.332 5.332 5 C -0.059 4.059 6 C -0.031 4.031 7 C 0.277 3.723 8 O -0.445 6.445 9 N -0.352 5.352 10 C 0.130 3.870 11 H 0.107 0.893 12 C -0.120 4.120 13 C 0.039 3.961 14 C 0.040 3.960 15 N -0.349 5.349 16 C -0.359 4.359 17 H 0.113 0.887 18 C -0.254 4.254 19 N -0.600 5.600 20 Si 0.806 3.194 21 H -0.184 1.184 22 H -0.227 1.227 23 H -0.218 1.218 24 C 0.005 3.995 25 N -0.142 5.142 26 C -0.167 4.167 27 C -0.187 4.187 28 N -0.218 5.218 29 C -0.106 4.106 30 H 0.144 0.856 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.053 0.947 34 H 0.085 0.915 35 H 0.128 0.872 36 H 0.164 0.836 37 H 0.177 0.823 38 H 0.264 0.736 39 H 0.149 0.851 40 H 0.124 0.876 41 H 0.025 0.975 42 H 0.075 0.925 43 H 0.059 0.941 44 H 0.106 0.894 45 H 0.063 0.937 46 H 0.203 0.797 47 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -1.314 8.344 18.320 20.173 hybrid contribution -0.410 -1.664 -1.745 2.446 sum -1.724 6.680 16.574 17.953 Atomic orbital electron populations 1.21928 0.89353 1.05094 1.06265 1.21390 0.91937 0.82720 0.73701 1.90667 1.71994 1.32762 1.52206 1.47575 1.07985 1.05705 1.71966 1.21744 0.78689 1.04295 1.01139 1.21892 1.01942 0.86875 0.92388 1.22014 0.76807 0.80244 0.93251 1.90787 1.54336 1.56967 1.42403 1.45683 1.57471 1.24388 1.07673 1.19685 0.89090 0.91737 0.86487 0.89263 1.22552 0.96967 0.92236 1.00222 1.23311 0.94170 0.79577 0.99073 1.22305 0.99072 0.83628 0.91002 1.46039 1.49923 1.01208 1.37766 1.19415 1.20928 0.82017 1.13518 0.88727 1.25612 1.00075 1.01438 0.98231 1.69981 1.34158 1.32049 1.23823 0.85026 0.77480 0.79635 0.77249 1.18437 1.22727 1.21764 1.22846 0.93394 0.87869 0.95394 1.46566 1.13534 1.10312 1.43800 1.22796 0.91220 0.94298 1.08410 1.22712 0.96047 0.95120 1.04847 1.69795 1.06633 1.24355 1.21012 1.24938 0.96614 0.85593 1.03408 0.85571 0.89812 0.89824 0.94691 0.91522 0.87248 0.83644 0.82303 0.73638 0.85063 0.87611 0.97541 0.92452 0.94149 0.89380 0.93718 0.79650 0.78829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.97 9.35 71.24 0.67 -2.30 16 2 C 0.51 12.57 7.77 87.66 0.68 13.25 16 3 O -0.60 -19.98 16.73 -3.03 -0.05 -20.04 16 4 N -0.60 -11.37 2.36 -851.14 -2.01 -13.38 16 5 C 0.08 1.49 10.46 127.77 1.34 2.83 16 6 C 0.10 1.00 5.51 85.63 0.47 1.47 16 7 C 0.49 9.96 7.15 87.66 0.63 10.58 16 8 O -0.57 -18.64 16.14 -3.04 -0.05 -18.69 16 9 N -0.70 -11.88 5.16 -441.82 -2.28 -14.16 16 10 C 0.24 6.22 3.23 45.15 0.15 6.37 16 11 H 0.09 2.85 7.67 -2.39 -0.02 2.83 16 12 C -0.08 -1.99 6.17 31.36 0.19 -1.79 16 13 C 0.12 3.97 1.56 5.61 0.01 3.98 16 14 C 0.17 7.31 6.94 86.15 0.60 7.90 16 15 N -0.62 -27.85 3.69 -731.71 -2.70 -30.55 16 16 C -0.23 -11.50 10.70 84.04 0.90 -10.60 16 17 H 0.10 4.42 7.83 -2.91 -0.02 4.40 16 18 C -0.06 -3.14 5.50 84.86 0.47 -2.67 16 19 N -0.95 -53.85 11.39 21.65 0.25 -53.60 16 20 Si 0.98 42.28 29.55 68.60 2.03 44.30 16 21 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 22 H -0.30 -13.37 7.11 99.48 0.71 -12.67 16 23 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 24 C 0.13 4.33 8.46 86.14 0.73 5.06 16 25 N -0.46 -14.34 3.37 -481.40 -1.62 -15.97 16 26 C -0.03 -0.99 12.03 82.99 1.00 0.00 16 27 C -0.04 -1.13 11.86 83.51 0.99 -0.14 16 28 N -0.50 -16.79 11.25 -187.11 -2.11 -18.89 16 29 C 0.16 5.00 8.22 138.31 1.14 6.13 16 30 H 0.13 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 32 H 0.08 1.47 6.01 -2.39 -0.01 1.46 16 33 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.07 1.31 7.51 -2.39 -0.02 1.29 16 35 H 0.11 1.04 7.84 -2.38 -0.02 1.02 16 36 H 0.15 0.62 6.70 -2.39 -0.02 0.61 16 37 H 0.16 0.28 7.86 -2.39 -0.02 0.26 16 38 H 0.42 3.34 8.38 -92.70 -0.78 2.57 16 39 H 0.13 2.14 7.76 -2.39 -0.02 2.12 16 40 H 0.11 2.91 7.92 -2.39 -0.02 2.89 16 41 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 42 H 0.06 2.84 7.08 -2.39 -0.02 2.82 16 43 H 0.25 13.89 8.31 -92.71 -0.77 13.12 16 44 H 0.09 2.44 8.09 -2.39 -0.02 2.42 16 45 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 46 H 0.19 4.42 8.06 -2.91 -0.02 4.40 16 47 H 0.19 4.31 8.06 -2.91 -0.02 4.28 16 Total: -1.00 -84.71 391.68 1.63 -83.08 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: 0.23 Total: 17.82 kcal Atomic # 6 Polarization: 30.13 SS G_CDS: 9.95 Total: 40.08 kcal Atomic # 7 Polarization: -136.09 SS G_CDS: -10.47 Total: -146.56 kcal Atomic # 8 Polarization: -38.62 SS G_CDS: -0.10 Total: -38.72 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.30 kcal Total: -84.71 1.63 -83.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101610256.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.072 kcal (2) G-P(sol) polarization free energy of solvation -84.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.079 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds