Wall clock time and date at job start Wed Apr 1 2020 04:58:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46501 * 109.47048 * 2 1 4 4 C 1.34775 * 119.99672 * 180.02562 * 3 2 1 5 5 O 1.21279 * 120.00200 * 0.02562 * 4 3 2 6 6 C 1.50704 * 119.99757 * 180.02562 * 4 3 2 7 7 C 1.50697 * 109.47088 * 180.02562 * 6 4 3 8 8 O 1.21284 * 120.00114 * 359.97438 * 7 6 4 9 9 N 1.34774 * 120.00493 * 180.02562 * 7 6 4 10 10 C 1.46493 * 120.00739 * 179.97438 * 9 7 6 11 11 H 1.09000 * 110.51571 * 323.89994 * 10 9 7 12 12 C 1.54758 * 110.47492 * 201.34788 * 10 9 7 13 13 C 1.53385 * 101.45201 * 217.08316 * 12 10 9 14 14 C 1.52460 * 115.84205 * 253.16504 * 13 12 10 15 15 N 1.47256 * 87.71509 * 218.48937 * 14 13 12 16 16 C 1.36945 * 135.93747 * 206.23078 * 15 14 13 17 17 H 1.07997 * 119.99756 * 0.02562 * 16 15 14 18 18 C 1.38805 * 119.99878 * 179.97438 * 16 15 14 19 19 N 1.31624 * 120.00257 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99929 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47187 * 179.97438 * 20 18 16 22 22 H 1.48494 * 109.47141 * 300.00154 * 20 18 16 23 23 H 1.48498 * 109.47018 * 60.00200 * 20 18 16 24 24 C 1.47261 * 88.12144 * 26.48701 * 15 14 13 25 25 N 1.46040 * 106.81391 * 24.81094 * 13 12 10 26 26 C 1.37275 * 142.31946 * 163.63793 * 25 13 12 27 27 C 1.34516 * 106.92783 * 180.10704 * 26 25 13 28 28 N 1.33979 * 108.05006 * 359.96898 * 27 26 25 29 29 C 1.30851 * 109.35721 * 359.97438 * 28 27 26 30 30 H 1.08993 * 109.46937 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46853 * 300.00121 * 1 2 3 32 32 H 1.08997 * 109.46844 * 59.99729 * 1 2 3 33 33 H 1.08995 * 109.47108 * 239.99893 * 2 1 3 34 34 H 1.09002 * 109.46844 * 119.99787 * 2 1 3 35 35 H 0.96999 * 120.00011 * 0.02562 * 3 2 1 36 36 H 1.08995 * 109.47295 * 59.99869 * 6 4 3 37 37 H 1.09002 * 109.46997 * 299.99555 * 6 4 3 38 38 H 0.97008 * 119.99415 * 359.97438 * 9 7 6 39 39 H 1.09006 * 111.03061 * 99.03938 * 12 10 9 40 40 H 1.08993 * 111.02131 * 335.12780 * 12 10 9 41 41 H 1.08996 * 113.50872 * 103.77887 * 14 13 12 42 42 H 1.08995 * 113.51107 * 333.20302 * 14 13 12 43 43 H 0.97001 * 119.99885 * 179.97438 * 19 18 16 44 44 H 1.09000 * 113.50846 * 88.22053 * 24 15 14 45 45 H 1.08995 * 113.50823 * 218.79401 * 24 15 14 46 46 H 1.08000 * 126.53112 * 0.06563 * 26 25 13 47 47 H 1.07991 * 125.97628 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3434 1.6274 -0.0005 5 8 4.1315 0.7056 -0.0015 6 6 3.8458 3.0483 0.0001 7 6 5.3527 3.0483 -0.0013 8 8 5.9592 1.9979 -0.0022 9 7 6.0267 4.2154 -0.0006 10 6 7.4917 4.2155 -0.0014 11 1 7.8740 3.3900 0.5991 12 6 8.0332 5.5653 0.5274 13 6 9.2628 5.7712 -0.3662 14 6 10.6152 5.5630 0.3061 15 7 11.1149 6.7045 -0.4787 16 6 12.3321 7.1147 -0.9535 17 1 13.2146 6.5233 -0.7594 18 6 12.4313 8.2901 -1.6852 19 7 11.3556 9.0106 -1.9222 20 14 14.0918 8.8501 -2.3323 21 1 13.9287 10.1248 -3.0764 22 1 15.0226 9.0565 -1.1939 23 1 14.6438 7.8139 -3.2415 24 6 9.7344 7.2152 -0.5241 25 7 9.0228 5.0191 -1.5948 26 6 9.4565 4.8879 -2.8906 27 6 8.7063 3.9271 -3.4594 28 7 7.8383 3.4804 -2.5417 29 6 8.0212 4.1287 -1.4199 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.3880 2.1185 0.0004 36 1 3.4829 3.5616 0.8905 37 1 3.4820 3.5626 -0.8895 38 1 5.5417 5.0555 0.0005 39 1 8.3204 5.4878 1.5761 40 1 7.3052 6.3630 0.3809 41 1 11.0887 4.6162 0.0464 42 1 10.5998 5.7473 1.3803 43 1 11.4250 9.8322 -2.4332 44 1 9.4781 7.8514 0.3230 45 1 9.4665 7.6594 -1.4827 46 1 10.2486 5.4496 -3.3634 47 1 8.7892 3.5770 -4.4776 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001101624043.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:58:03 Heat of formation + Delta-G solvation = 75.034634 kcal Electronic energy + Delta-G solvation = -30478.437713 eV Core-core repulsion = 26279.304335 eV Total energy + Delta-G solvation = -4199.133378 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.15708 -40.28627 -38.80124 -38.49688 -35.68932 -35.22044 -33.32056 -32.05351 -31.62090 -30.60279 -29.41888 -28.28322 -27.19521 -25.12045 -24.54468 -23.35034 -21.92637 -21.42650 -21.28286 -20.33473 -19.74176 -18.67931 -17.51709 -17.09255 -16.86326 -16.26694 -16.06148 -15.83037 -15.48548 -15.13842 -14.94838 -14.59779 -14.16139 -14.03637 -13.85598 -13.59833 -13.57710 -13.44780 -13.23827 -13.03131 -12.78149 -12.46289 -12.29860 -12.20390 -12.11899 -11.87429 -11.72422 -11.49792 -11.42366 -10.95006 -10.85708 -10.22522 -10.17948 -10.11890 -9.69261 -9.44863 -9.39228 -9.28839 -9.13525 -9.01641 -8.84691 -7.84210 -7.13586 -5.95342 -3.29599 2.45500 2.52267 2.73872 2.79111 3.20445 3.30503 3.34605 3.35729 3.38228 3.72513 4.13444 4.30059 4.35615 4.53160 4.61139 4.71364 4.73475 4.78799 4.85842 4.94821 4.97637 5.05954 5.12482 5.38920 5.43573 5.46106 5.53485 5.54732 5.66585 5.74405 5.78766 5.91176 6.04759 6.16390 6.19175 6.24028 6.27906 6.43503 6.73770 6.90592 7.00769 7.23772 7.26181 7.37323 7.48332 7.67763 7.76642 8.10158 8.36875 8.66783 8.84136 9.50981 10.36816 11.21809 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.030944 B = 0.002113 C = 0.002065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.637594 B =13247.303546 C =13556.170866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.115 3.885 3 N -0.739 5.739 4 C 0.510 3.490 5 O -0.488 6.488 6 C -0.164 4.164 7 C 0.515 3.485 8 O -0.480 6.480 9 N -0.721 5.721 10 C 0.237 3.763 11 H 0.113 0.887 12 C -0.114 4.114 13 C 0.096 3.904 14 C 0.118 3.882 15 N -0.603 5.603 16 C -0.223 4.223 17 H 0.083 0.917 18 C -0.003 4.003 19 N -0.920 5.920 20 Si 0.916 3.084 21 H -0.289 1.289 22 H -0.284 1.284 23 H -0.283 1.283 24 C 0.161 3.839 25 N -0.428 5.428 26 C 0.007 3.993 27 C -0.050 4.050 28 N -0.467 5.467 29 C 0.154 3.846 30 H 0.073 0.927 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.398 0.602 36 H 0.120 0.880 37 H 0.121 0.879 38 H 0.400 0.600 39 H 0.107 0.893 40 H 0.094 0.906 41 H 0.049 0.951 42 H 0.056 0.944 43 H 0.257 0.743 44 H 0.047 0.953 45 H 0.081 0.919 46 H 0.171 0.829 47 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.020 -7.902 6.310 24.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.009 4.009 3 N -0.395 5.395 4 C 0.294 3.706 5 O -0.360 6.360 6 C -0.207 4.207 7 C 0.299 3.701 8 O -0.350 6.350 9 N -0.375 5.375 10 C 0.130 3.870 11 H 0.131 0.869 12 C -0.154 4.154 13 C 0.010 3.990 14 C -0.009 4.009 15 N -0.329 5.329 16 C -0.350 4.350 17 H 0.101 0.899 18 C -0.200 4.200 19 N -0.566 5.566 20 Si 0.745 3.255 21 H -0.214 1.214 22 H -0.210 1.210 23 H -0.209 1.209 24 C 0.035 3.965 25 N -0.110 5.110 26 C -0.127 4.127 27 C -0.198 4.198 28 N -0.186 5.186 29 C -0.110 4.110 30 H 0.092 0.908 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.232 0.768 36 H 0.138 0.862 37 H 0.139 0.861 38 H 0.234 0.766 39 H 0.125 0.875 40 H 0.113 0.887 41 H 0.067 0.933 42 H 0.073 0.927 43 H 0.067 0.933 44 H 0.065 0.935 45 H 0.099 0.901 46 H 0.189 0.811 47 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -21.115 -9.634 6.008 23.974 hybrid contribution 1.033 2.027 -0.449 2.319 sum -20.082 -7.607 5.559 22.183 Atomic orbital electron populations 1.22000 0.94518 1.03212 1.02432 1.21260 0.94011 0.83071 1.02512 1.46036 1.06937 1.08808 1.77712 1.20029 0.82244 0.90921 0.77400 1.90892 1.54324 1.45421 1.45315 1.21567 0.95481 0.97099 1.06520 1.19851 0.88774 0.84134 0.77390 1.90893 1.69077 1.30262 1.44803 1.45870 1.05944 1.08632 1.77081 1.19843 0.79810 0.99235 0.88130 0.86917 1.22740 0.96548 0.95617 1.00469 1.22488 0.95388 0.98585 0.82581 1.22663 0.89179 0.93690 0.95355 1.45606 1.04225 1.23312 1.59729 1.18865 0.83585 1.05065 1.27482 0.89943 1.24793 0.97701 0.97015 1.00472 1.69784 1.26984 1.16151 1.43668 0.86150 0.82709 0.77942 0.78683 1.21423 1.21005 1.20890 1.22303 0.84058 0.88479 1.01708 1.45628 1.27534 1.28961 1.08861 1.22500 1.03849 1.03363 0.83027 1.22174 0.97798 1.00037 0.99758 1.69767 1.24697 1.25646 0.98531 1.24471 0.94929 0.94243 0.97359 0.90848 0.92027 0.91974 0.91517 0.91575 0.76850 0.86181 0.86100 0.76568 0.87485 0.88742 0.93272 0.92712 0.93345 0.93548 0.90111 0.81128 0.81484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.64 10.03 37.16 0.37 -0.27 16 2 C 0.11 0.82 6.39 -4.04 -0.03 0.80 16 3 N -0.74 -5.31 5.56 -60.29 -0.33 -5.64 16 4 C 0.51 5.72 7.82 -10.98 -0.09 5.64 16 5 O -0.49 -8.40 14.18 -18.96 -0.27 -8.67 16 6 C -0.16 -1.32 6.19 -29.03 -0.18 -1.50 16 7 C 0.52 6.82 7.81 -10.99 -0.09 6.73 16 8 O -0.48 -9.15 13.89 -18.96 -0.26 -9.41 16 9 N -0.72 -8.14 5.16 -53.57 -0.28 -8.42 16 10 C 0.24 3.37 3.23 -67.69 -0.22 3.15 16 11 H 0.11 1.71 7.67 -51.93 -0.40 1.31 16 12 C -0.11 -1.40 6.24 -25.61 -0.16 -1.56 16 13 C 0.10 1.68 1.64 -133.40 -0.22 1.46 16 14 C 0.12 2.26 8.18 -7.89 -0.06 2.20 16 15 N -0.60 -14.42 3.79 -184.70 -0.70 -15.12 16 16 C -0.22 -5.96 10.74 -15.06 -0.16 -6.12 16 17 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 18 C 0.00 -0.07 5.50 -17.43 -0.10 -0.17 16 19 N -0.92 -25.83 11.51 55.49 0.64 -25.19 16 20 Si 0.92 21.40 29.55 -169.99 -5.02 16.38 16 21 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 C 0.16 3.41 6.94 -7.76 -0.05 3.36 16 25 N -0.43 -8.22 3.42 -100.93 -0.35 -8.56 16 26 C 0.01 0.14 12.03 -16.43 -0.20 -0.06 16 27 C -0.05 -0.94 11.86 -17.93 -0.21 -1.16 16 28 N -0.47 -9.56 11.25 -10.49 -0.12 -9.68 16 29 C 0.15 2.84 8.22 -154.55 -1.27 1.57 16 30 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 31 H 0.06 0.20 8.14 -51.93 -0.42 -0.23 16 32 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.40 1.43 8.47 -40.82 -0.35 1.09 16 36 H 0.12 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.12 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.40 3.03 8.38 -40.82 -0.34 2.69 16 39 H 0.11 1.04 7.87 -51.93 -0.41 0.64 16 40 H 0.09 0.96 7.80 -51.93 -0.40 0.56 16 41 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.06 0.92 7.98 -51.93 -0.41 0.51 16 43 H 0.26 7.05 8.31 -40.82 -0.34 6.72 16 44 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 45 H 0.08 1.98 7.15 -51.93 -0.37 1.61 16 46 H 0.17 3.50 8.06 -52.49 -0.42 3.08 16 47 H 0.17 2.67 8.06 -52.49 -0.42 2.25 16 LS Contribution 393.30 15.07 5.93 5.93 Total: -1.00 -39.47 393.30 -10.30 -49.77 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -6.88 Total: 4.54 kcal Atomic # 6 Polarization: 16.74 SS G_CDS: -2.66 Total: 14.08 kcal Atomic # 7 Polarization: -71.47 SS G_CDS: -1.13 Total: -72.60 kcal Atomic # 8 Polarization: -17.55 SS G_CDS: -0.53 Total: -18.08 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -39.47 -10.30 -49.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101624043.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.804 kcal (2) G-P(sol) polarization free energy of solvation -39.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.770 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds