Wall clock time and date at job start Wed Apr 1 2020 06:13:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46501 * 120.00250 * 2 1 4 4 C 1.34775 * 119.99672 * 179.97438 * 2 1 3 5 5 O 1.21279 * 120.00200 * 0.02562 * 4 2 1 6 6 C 1.50704 * 119.99757 * 180.02562 * 4 2 1 7 7 C 1.50697 * 109.47088 * 180.02562 * 6 4 2 8 8 O 1.21284 * 120.00114 * 359.97438 * 7 6 4 9 9 N 1.34774 * 120.00493 * 180.02562 * 7 6 4 10 10 C 1.46493 * 120.00739 * 179.97438 * 9 7 6 11 11 H 1.09000 * 110.51571 * 323.89994 * 10 9 7 12 12 C 1.54758 * 110.47492 * 201.34788 * 10 9 7 13 13 C 1.53385 * 101.45201 * 217.08316 * 12 10 9 14 14 C 1.52460 * 115.84205 * 253.16504 * 13 12 10 15 15 N 1.47256 * 87.71509 * 218.48937 * 14 13 12 16 16 C 1.36945 * 135.93747 * 206.23078 * 15 14 13 17 17 H 1.07997 * 119.99756 * 0.02562 * 16 15 14 18 18 C 1.38805 * 119.99878 * 179.97438 * 16 15 14 19 19 N 1.31624 * 120.00257 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99929 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47187 * 179.97438 * 20 18 16 22 22 H 1.48494 * 109.47141 * 300.00154 * 20 18 16 23 23 H 1.48498 * 109.47018 * 60.00200 * 20 18 16 24 24 C 1.47261 * 88.12144 * 26.48701 * 15 14 13 25 25 N 1.46040 * 106.81391 * 24.81094 * 13 12 10 26 26 C 1.37275 * 142.31946 * 163.63793 * 25 13 12 27 27 C 1.34516 * 106.92783 * 180.10704 * 26 25 13 28 28 N 1.33979 * 108.05006 * 359.96898 * 27 26 25 29 29 C 1.30851 * 109.35721 * 359.97438 * 28 27 26 30 30 H 1.09003 * 109.46896 * 270.00233 * 1 2 3 31 31 H 1.09006 * 109.47015 * 30.00044 * 1 2 3 32 32 H 1.09004 * 109.47258 * 149.99915 * 1 2 3 33 33 H 1.09003 * 109.46908 * 270.00112 * 3 2 1 34 34 H 1.09002 * 109.46771 * 29.99791 * 3 2 1 35 35 H 1.09000 * 109.47154 * 149.99745 * 3 2 1 36 36 H 1.08995 * 109.47295 * 59.99869 * 6 4 2 37 37 H 1.09002 * 109.46997 * 299.99555 * 6 4 2 38 38 H 0.97008 * 119.99415 * 359.97438 * 9 7 6 39 39 H 1.09006 * 111.03061 * 99.03938 * 12 10 9 40 40 H 1.08993 * 111.02131 * 335.12780 * 12 10 9 41 41 H 1.08996 * 113.50872 * 103.77887 * 14 13 12 42 42 H 1.08995 * 113.51107 * 333.20302 * 14 13 12 43 43 H 0.97001 * 119.99885 * 179.97438 * 19 18 16 44 44 H 1.09000 * 113.50846 * 88.22053 * 24 15 14 45 45 H 1.08995 * 113.50823 * 218.79401 * 24 15 14 46 46 H 1.08000 * 126.53112 * 0.06563 * 26 25 13 47 47 H 1.07991 * 125.97628 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.1388 -1.1672 0.0005 5 8 1.5324 -2.2175 0.0005 6 6 3.6459 -1.1672 0.0011 7 6 4.1482 -2.5880 0.0010 8 8 3.3600 -3.5099 0.0009 9 7 5.4732 -2.8345 0.0020 10 6 5.9615 -4.2156 0.0024 11 1 5.3108 -4.8507 0.6035 12 6 7.4147 -4.2758 0.5312 13 6 8.0186 -5.3672 -0.3614 14 6 8.2732 -6.7111 0.3121 15 7 9.5159 -6.8024 -0.4726 16 6 10.3084 -7.8137 -0.9465 17 1 10.0450 -8.8427 -0.7515 18 6 11.4496 -7.5161 -1.6785 19 7 11.7704 -6.2619 -1.9166 20 14 12.5311 -8.8955 -2.3243 21 1 13.6785 -8.3176 -3.0690 22 1 13.0360 -9.7034 -1.1852 23 1 11.7381 -9.7622 -3.2328 24 6 9.5373 -5.3307 -0.5194 25 7 7.2295 -5.3928 -1.5900 26 6 7.2505 -5.8465 -2.8854 27 6 6.0945 -5.4600 -3.4545 28 7 5.3841 -4.7897 -2.5374 29 6 6.0563 -4.7451 -1.4157 30 1 -0.3633 0.0000 1.0277 31 1 -0.3633 0.8900 -0.5139 32 1 -0.3634 -0.8900 -0.5139 33 1 2.3792 1.5833 -1.0277 34 1 1.6084 2.0284 0.5138 35 1 3.1500 1.1383 0.5139 36 1 4.0089 -0.6532 0.8910 37 1 4.0095 -0.6537 -0.8889 38 1 6.1036 -2.0971 0.0024 39 1 7.4373 -4.5714 1.5802 40 1 7.9241 -3.3236 0.3839 41 1 7.5384 -7.4733 0.0531 42 1 8.4418 -6.6342 1.3862 43 1 12.5681 -6.0540 -2.4278 44 1 10.0517 -4.8762 0.3273 45 1 9.8668 -4.9309 -1.4783 46 1 8.0440 -6.4065 -3.3577 47 1 5.7920 -5.6558 -4.4725 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001101646730.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:13:30 Heat of formation + Delta-G solvation = 89.329204 kcal Electronic energy + Delta-G solvation = -30787.052081 eV Core-core repulsion = 26588.538562 eV Total energy + Delta-G solvation = -4198.513518 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.15937 -40.40380 -38.85742 -38.51063 -35.82630 -35.33888 -33.31435 -31.95354 -31.37273 -30.14761 -28.30117 -28.12267 -27.22409 -26.06431 -25.12096 -24.34420 -21.92853 -21.30925 -21.22189 -19.75285 -19.40365 -18.68072 -17.69823 -16.99329 -16.71872 -16.44735 -16.15444 -15.79404 -15.48911 -14.99534 -14.93345 -14.56776 -14.06330 -13.99109 -13.71560 -13.53894 -13.40915 -13.34836 -13.19796 -13.04495 -12.95574 -12.88622 -12.46643 -12.31792 -12.15387 -12.11923 -11.83241 -11.50007 -11.42565 -10.95121 -10.85839 -10.21444 -10.17024 -10.11068 -9.69468 -9.45461 -9.39924 -9.14130 -9.01855 -8.94804 -8.84874 -7.84366 -7.13846 -5.95499 -3.29794 2.42190 2.48199 2.65146 2.77379 3.13960 3.30141 3.33220 3.35512 3.36033 3.71672 4.13103 4.18534 4.29888 4.51874 4.60418 4.67473 4.74594 4.85266 4.86438 4.92942 5.00137 5.07622 5.12243 5.24140 5.29625 5.38732 5.44538 5.53287 5.55622 5.74157 5.78496 5.90848 6.04603 6.15063 6.16214 6.23826 6.27713 6.43063 6.73552 6.90370 7.00566 7.03049 7.25973 7.37162 7.47567 7.67588 7.76473 8.02678 8.35899 8.66641 8.83979 9.50788 10.36593 11.21657 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.028063 B = 0.002250 C = 0.002203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.531383 B =12444.025752 C =12706.235533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.631 5.631 3 C 0.077 3.923 4 C 0.512 3.488 5 O -0.487 6.487 6 C -0.162 4.162 7 C 0.515 3.485 8 O -0.480 6.480 9 N -0.721 5.721 10 C 0.237 3.763 11 H 0.113 0.887 12 C -0.114 4.114 13 C 0.097 3.903 14 C 0.118 3.882 15 N -0.603 5.603 16 C -0.223 4.223 17 H 0.083 0.917 18 C -0.003 4.003 19 N -0.920 5.920 20 Si 0.916 3.084 21 H -0.289 1.289 22 H -0.284 1.284 23 H -0.282 1.282 24 C 0.161 3.839 25 N -0.429 5.429 26 C 0.007 3.993 27 C -0.050 4.050 28 N -0.467 5.467 29 C 0.153 3.847 30 H 0.053 0.947 31 H 0.067 0.933 32 H 0.077 0.923 33 H 0.057 0.943 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.120 0.880 37 H 0.121 0.879 38 H 0.400 0.600 39 H 0.107 0.893 40 H 0.094 0.906 41 H 0.049 0.951 42 H 0.056 0.944 43 H 0.257 0.743 44 H 0.047 0.953 45 H 0.081 0.919 46 H 0.171 0.829 47 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.910 18.219 6.275 23.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.368 5.368 3 C -0.066 4.066 4 C 0.297 3.703 5 O -0.358 6.358 6 C -0.205 4.205 7 C 0.298 3.702 8 O -0.350 6.350 9 N -0.375 5.375 10 C 0.130 3.870 11 H 0.131 0.869 12 C -0.154 4.154 13 C 0.010 3.990 14 C -0.009 4.009 15 N -0.329 5.329 16 C -0.350 4.350 17 H 0.101 0.899 18 C -0.200 4.200 19 N -0.566 5.566 20 Si 0.745 3.255 21 H -0.214 1.214 22 H -0.210 1.210 23 H -0.209 1.209 24 C 0.035 3.965 25 N -0.110 5.110 26 C -0.127 4.127 27 C -0.198 4.198 28 N -0.186 5.186 29 C -0.110 4.110 30 H 0.071 0.929 31 H 0.086 0.914 32 H 0.096 0.904 33 H 0.076 0.924 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.138 0.862 37 H 0.139 0.861 38 H 0.234 0.766 39 H 0.125 0.875 40 H 0.113 0.887 41 H 0.067 0.933 42 H 0.073 0.927 43 H 0.067 0.933 44 H 0.065 0.935 45 H 0.099 0.901 46 H 0.189 0.811 47 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -15.114 17.001 5.974 23.519 hybrid contribution 2.040 -0.566 -0.440 2.162 sum -13.074 16.435 5.534 21.718 Atomic orbital electron populations 1.21598 0.79066 1.03124 1.01721 1.47773 1.07101 1.06172 1.75767 1.21821 0.97330 0.85471 1.02009 1.20044 0.89292 0.83512 0.77421 1.90882 1.69248 1.30019 1.45634 1.21603 0.94823 0.97713 1.06333 1.19868 0.82391 0.90525 0.77389 1.90891 1.54174 1.45164 1.44795 1.45867 1.06967 1.07599 1.77081 1.19845 0.95723 0.83297 0.88148 0.86909 1.22742 0.92456 0.99699 1.00483 1.22486 0.96273 0.97678 0.82584 1.22665 0.90369 0.92510 0.95356 1.45613 1.25673 1.01892 1.59737 1.18862 1.02737 0.85888 1.27473 0.89941 1.24799 0.98064 0.96681 1.00485 1.69784 1.27084 1.16073 1.43653 0.86146 0.79895 0.80746 0.78678 1.21422 1.21006 1.20882 1.22304 0.85719 0.86809 1.01715 1.45629 1.16388 1.40092 1.08886 1.22499 1.01806 1.05385 0.83032 1.22175 0.92859 1.04969 0.99767 1.69768 1.30568 1.19752 0.98542 1.24469 0.86167 1.03008 0.97363 0.92883 0.91381 0.90439 0.92436 0.90981 0.90876 0.86217 0.86138 0.76574 0.87476 0.88738 0.93264 0.92702 0.93341 0.93542 0.90108 0.81128 0.81481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.64 10.44 59.85 0.62 1.27 16 2 N -0.63 -5.19 3.27 -189.51 -0.62 -5.81 16 3 C 0.08 0.29 10.24 59.85 0.61 0.91 16 4 C 0.51 6.07 7.67 -10.98 -0.08 5.99 16 5 O -0.49 -8.52 13.76 -18.96 -0.26 -8.78 16 6 C -0.16 -1.39 4.74 -29.03 -0.14 -1.52 16 7 C 0.52 6.91 7.81 -10.99 -0.09 6.83 16 8 O -0.48 -9.21 13.89 -18.96 -0.26 -9.48 16 9 N -0.72 -8.21 5.16 -53.57 -0.28 -8.48 16 10 C 0.24 3.38 3.23 -67.69 -0.22 3.16 16 11 H 0.11 1.72 7.67 -51.93 -0.40 1.32 16 12 C -0.11 -1.40 6.24 -25.61 -0.16 -1.56 16 13 C 0.10 1.69 1.64 -133.40 -0.22 1.47 16 14 C 0.12 2.26 8.18 -7.89 -0.06 2.20 16 15 N -0.60 -14.45 3.79 -184.70 -0.70 -15.15 16 16 C -0.22 -5.95 10.74 -15.06 -0.16 -6.11 16 17 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 18 C 0.00 -0.09 5.50 -17.43 -0.10 -0.18 16 19 N -0.92 -25.84 11.51 55.49 0.64 -25.20 16 20 Si 0.92 21.41 29.55 -169.99 -5.02 16.38 16 21 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 C 0.16 3.41 6.94 -7.76 -0.05 3.36 16 25 N -0.43 -8.23 3.42 -100.93 -0.35 -8.57 16 26 C 0.01 0.14 12.03 -16.43 -0.20 -0.06 16 27 C -0.05 -0.94 11.86 -17.93 -0.21 -1.16 16 28 N -0.47 -9.57 11.25 -10.49 -0.12 -9.69 16 29 C 0.15 2.84 8.22 -154.55 -1.27 1.57 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.32 8.07 -51.93 -0.42 -0.10 16 32 H 0.08 0.74 7.42 -51.93 -0.39 0.36 16 33 H 0.06 0.18 8.14 -51.93 -0.42 -0.24 16 34 H 0.07 0.17 8.07 -51.93 -0.42 -0.25 16 35 H 0.07 0.16 6.44 -51.93 -0.33 -0.17 16 36 H 0.12 0.55 7.40 -51.93 -0.38 0.16 16 37 H 0.12 0.74 8.11 -51.93 -0.42 0.32 16 38 H 0.40 3.06 8.38 -40.82 -0.34 2.71 16 39 H 0.11 1.04 7.87 -51.93 -0.41 0.64 16 40 H 0.09 0.96 7.80 -51.93 -0.40 0.56 16 41 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.06 0.93 7.98 -51.93 -0.41 0.51 16 43 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 44 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 45 H 0.08 1.98 7.15 -51.93 -0.37 1.61 16 46 H 0.17 3.50 8.06 -52.49 -0.42 3.08 16 47 H 0.17 2.67 8.06 -52.49 -0.42 2.25 16 LS Contribution 389.58 15.07 5.87 5.87 Total: -1.00 -39.60 389.58 -9.61 -49.21 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -6.79 Total: 3.54 kcal Atomic # 6 Polarization: 17.88 SS G_CDS: -1.72 Total: 16.15 kcal Atomic # 7 Polarization: -71.48 SS G_CDS: -1.42 Total: -72.90 kcal Atomic # 8 Polarization: -17.73 SS G_CDS: -0.52 Total: -18.25 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -39.60 -9.61 -49.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101646730.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.536 kcal (2) G-P(sol) polarization free energy of solvation -39.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds