Wall clock time and date at job start Wed Apr 1 2020 06:13:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46501 * 120.00250 * 2 1 4 4 C 1.34775 * 119.99672 * 179.97438 * 2 1 3 5 5 O 1.21279 * 120.00200 * 0.02562 * 4 2 1 6 6 C 1.50704 * 119.99757 * 180.02562 * 4 2 1 7 7 C 1.50697 * 109.47088 * 180.02562 * 6 4 2 8 8 O 1.21284 * 120.00114 * 359.97438 * 7 6 4 9 9 N 1.34774 * 120.00493 * 180.02562 * 7 6 4 10 10 C 1.46493 * 120.00739 * 179.97438 * 9 7 6 11 11 H 1.09000 * 110.51571 * 323.89994 * 10 9 7 12 12 C 1.54758 * 110.47492 * 201.34788 * 10 9 7 13 13 C 1.53385 * 101.45201 * 217.08316 * 12 10 9 14 14 C 1.52460 * 115.84205 * 253.16504 * 13 12 10 15 15 N 1.47256 * 87.71509 * 218.48937 * 14 13 12 16 16 C 1.36945 * 135.93747 * 206.23078 * 15 14 13 17 17 H 1.07997 * 119.99756 * 0.02562 * 16 15 14 18 18 C 1.38805 * 119.99878 * 179.97438 * 16 15 14 19 19 N 1.31624 * 120.00257 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99929 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47187 * 179.97438 * 20 18 16 22 22 H 1.48494 * 109.47141 * 300.00154 * 20 18 16 23 23 H 1.48498 * 109.47018 * 60.00200 * 20 18 16 24 24 C 1.47261 * 88.12144 * 26.48701 * 15 14 13 25 25 N 1.46040 * 106.81391 * 24.81094 * 13 12 10 26 26 C 1.37275 * 142.31946 * 163.63793 * 25 13 12 27 27 C 1.34516 * 106.92783 * 180.10704 * 26 25 13 28 28 N 1.33979 * 108.05006 * 359.96898 * 27 26 25 29 29 C 1.30851 * 109.35721 * 359.97438 * 28 27 26 30 30 H 1.09003 * 109.46896 * 270.00233 * 1 2 3 31 31 H 1.09006 * 109.47015 * 30.00044 * 1 2 3 32 32 H 1.09004 * 109.47258 * 149.99915 * 1 2 3 33 33 H 1.09003 * 109.46908 * 270.00112 * 3 2 1 34 34 H 1.09002 * 109.46771 * 29.99791 * 3 2 1 35 35 H 1.09000 * 109.47154 * 149.99745 * 3 2 1 36 36 H 1.08995 * 109.47295 * 59.99869 * 6 4 2 37 37 H 1.09002 * 109.46997 * 299.99555 * 6 4 2 38 38 H 0.97008 * 119.99415 * 359.97438 * 9 7 6 39 39 H 1.09006 * 111.03061 * 99.03938 * 12 10 9 40 40 H 1.08993 * 111.02131 * 335.12780 * 12 10 9 41 41 H 1.08996 * 113.50872 * 103.77887 * 14 13 12 42 42 H 1.08995 * 113.51107 * 333.20302 * 14 13 12 43 43 H 0.97001 * 119.99885 * 179.97438 * 19 18 16 44 44 H 1.09000 * 113.50846 * 88.22053 * 24 15 14 45 45 H 1.08995 * 113.50823 * 218.79401 * 24 15 14 46 46 H 1.08000 * 126.53112 * 0.06563 * 26 25 13 47 47 H 1.07991 * 125.97628 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.1388 -1.1672 0.0005 5 8 1.5324 -2.2175 0.0005 6 6 3.6459 -1.1672 0.0011 7 6 4.1482 -2.5880 0.0010 8 8 3.3600 -3.5099 0.0009 9 7 5.4732 -2.8345 0.0020 10 6 5.9615 -4.2156 0.0024 11 1 5.3108 -4.8507 0.6035 12 6 7.4147 -4.2758 0.5312 13 6 8.0186 -5.3672 -0.3614 14 6 8.2732 -6.7111 0.3121 15 7 9.5159 -6.8024 -0.4726 16 6 10.3084 -7.8137 -0.9465 17 1 10.0450 -8.8427 -0.7515 18 6 11.4496 -7.5161 -1.6785 19 7 11.7704 -6.2619 -1.9166 20 14 12.5311 -8.8955 -2.3243 21 1 13.6785 -8.3176 -3.0690 22 1 13.0360 -9.7034 -1.1852 23 1 11.7381 -9.7622 -3.2328 24 6 9.5373 -5.3307 -0.5194 25 7 7.2295 -5.3928 -1.5900 26 6 7.2505 -5.8465 -2.8854 27 6 6.0945 -5.4600 -3.4545 28 7 5.3841 -4.7897 -2.5374 29 6 6.0563 -4.7451 -1.4157 30 1 -0.3633 0.0000 1.0277 31 1 -0.3633 0.8900 -0.5139 32 1 -0.3634 -0.8900 -0.5139 33 1 2.3792 1.5833 -1.0277 34 1 1.6084 2.0284 0.5138 35 1 3.1500 1.1383 0.5139 36 1 4.0089 -0.6532 0.8910 37 1 4.0095 -0.6537 -0.8889 38 1 6.1036 -2.0971 0.0024 39 1 7.4373 -4.5714 1.5802 40 1 7.9241 -3.3236 0.3839 41 1 7.5384 -7.4733 0.0531 42 1 8.4418 -6.6342 1.3862 43 1 12.5681 -6.0540 -2.4278 44 1 10.0517 -4.8762 0.3273 45 1 9.8668 -4.9309 -1.4783 46 1 8.0440 -6.4065 -3.3577 47 1 5.7920 -5.6558 -4.4725 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001101646730.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:13:27 Heat of formation + Delta-G solvation = 60.199766 kcal Electronic energy + Delta-G solvation = -30788.315228 eV Core-core repulsion = 26588.538562 eV Total energy + Delta-G solvation = -4199.776666 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 2.12 seconds Orbital eigenvalues (eV) -43.60311 -41.29247 -40.15977 -39.73260 -36.86089 -36.32893 -34.83956 -33.62273 -32.47502 -31.25238 -29.89193 -28.94422 -28.44081 -26.78840 -26.72324 -25.75890 -23.37080 -22.88849 -22.25847 -21.11388 -20.17652 -20.16869 -18.83580 -18.53402 -17.67370 -17.36458 -17.10804 -17.07052 -16.62260 -16.53924 -16.02864 -15.80312 -15.60150 -15.48838 -15.02226 -14.95989 -14.69090 -14.35811 -14.18644 -14.06559 -13.92473 -13.50057 -13.40865 -13.34096 -13.28003 -13.19467 -12.93340 -12.82712 -12.80404 -12.72720 -12.52835 -11.94785 -11.77243 -11.49558 -11.06823 -11.05388 -10.87656 -10.46818 -10.38496 -10.21150 -9.58191 -9.34517 -9.03879 -7.99026 -5.32260 1.05234 1.42513 1.44154 1.50330 1.63773 1.71822 1.83106 1.91921 2.16052 2.38977 2.50464 2.88932 3.19876 3.29875 3.30541 3.49108 3.54624 3.77487 3.96493 4.09577 4.24268 4.28080 4.30723 4.41860 4.50031 4.53385 4.56579 4.60045 4.62207 4.69043 4.72556 4.84199 4.87853 4.89401 4.96134 5.06003 5.07734 5.16881 5.36819 5.43758 5.50778 5.60474 5.81302 5.89976 6.20969 6.39706 6.64517 6.82222 7.17688 7.26620 7.46742 7.50712 8.45376 9.17390 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.028063 B = 0.002250 C = 0.002203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.531383 B =12444.025752 C =12706.235533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.626 5.626 3 C 0.067 3.933 4 C 0.498 3.502 5 O -0.560 6.560 6 C -0.148 4.148 7 C 0.508 3.492 8 O -0.545 6.545 9 N -0.702 5.702 10 C 0.240 3.760 11 H 0.105 0.895 12 C -0.094 4.094 13 C 0.110 3.890 14 C 0.118 3.882 15 N -0.637 5.637 16 C -0.230 4.230 17 H 0.079 0.921 18 C -0.057 4.057 19 N -0.946 5.946 20 Si 0.975 3.025 21 H -0.292 1.292 22 H -0.276 1.276 23 H -0.282 1.282 24 C 0.164 3.836 25 N -0.439 5.439 26 C -0.022 4.022 27 C -0.044 4.044 28 N -0.503 5.503 29 C 0.159 3.841 30 H 0.058 0.942 31 H 0.099 0.901 32 H 0.045 0.955 33 H 0.068 0.932 34 H 0.090 0.910 35 H 0.097 0.903 36 H 0.171 0.829 37 H 0.153 0.847 38 H 0.422 0.578 39 H 0.146 0.854 40 H 0.126 0.874 41 H 0.035 0.965 42 H 0.093 0.907 43 H 0.250 0.750 44 H 0.063 0.937 45 H 0.040 0.960 46 H 0.153 0.847 47 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.729 21.203 8.183 26.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.361 5.361 3 C -0.074 4.074 4 C 0.286 3.714 5 O -0.437 6.437 6 C -0.190 4.190 7 C 0.294 3.706 8 O -0.419 6.419 9 N -0.358 5.358 10 C 0.131 3.869 11 H 0.123 0.877 12 C -0.133 4.133 13 C 0.024 3.976 14 C -0.008 4.008 15 N -0.363 5.363 16 C -0.358 4.358 17 H 0.097 0.903 18 C -0.250 4.250 19 N -0.594 5.594 20 Si 0.803 3.197 21 H -0.218 1.218 22 H -0.202 1.202 23 H -0.208 1.208 24 C 0.038 3.962 25 N -0.121 5.121 26 C -0.156 4.156 27 C -0.191 4.191 28 N -0.223 5.223 29 C -0.105 4.105 30 H 0.076 0.924 31 H 0.117 0.883 32 H 0.064 0.936 33 H 0.087 0.913 34 H 0.109 0.891 35 H 0.115 0.885 36 H 0.188 0.812 37 H 0.171 0.829 38 H 0.261 0.739 39 H 0.164 0.836 40 H 0.144 0.856 41 H 0.053 0.947 42 H 0.110 0.890 43 H 0.059 0.941 44 H 0.080 0.920 45 H 0.059 0.941 46 H 0.171 0.829 47 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -14.915 20.080 7.902 26.232 hybrid contribution 1.884 -1.444 -1.036 2.590 sum -13.031 18.635 6.866 23.754 Atomic orbital electron populations 1.21675 0.79156 1.03057 1.02086 1.47937 1.07494 1.06881 1.73766 1.22180 0.98281 0.83555 1.03416 1.20717 0.90759 0.83434 0.76525 1.90861 1.70767 1.32727 1.49301 1.21659 0.92387 0.94868 1.10110 1.20740 0.82202 0.91962 0.75677 1.90882 1.55839 1.47521 1.47665 1.45680 1.07049 1.07071 1.75968 1.19875 0.96951 0.84738 0.85322 0.87738 1.22880 0.90197 0.99164 1.01056 1.22454 0.94135 0.98512 0.82515 1.22909 0.87913 0.93134 0.96836 1.45876 1.26812 1.02695 1.60947 1.19122 1.02875 0.86764 1.27030 0.90344 1.25507 0.99538 0.98641 1.01363 1.69943 1.27243 1.17524 1.44716 0.85217 0.78050 0.78360 0.78094 1.21837 1.20208 1.20790 1.22249 0.88494 0.85292 1.00172 1.45840 1.17103 1.40157 1.08984 1.22409 1.02061 1.06883 0.84250 1.22539 0.92161 1.03839 1.00585 1.69803 1.31507 1.21218 0.99752 1.25387 0.85177 1.01531 0.98428 0.92356 0.88276 0.93597 0.91341 0.89141 0.88479 0.81188 0.82948 0.73909 0.83588 0.85596 0.94682 0.88955 0.94084 0.91961 0.94110 0.82902 0.79387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.15 10.44 127.77 1.33 2.48 16 2 N -0.63 -8.87 3.27 -871.86 -2.85 -11.73 16 3 C 0.07 0.22 10.24 127.77 1.31 1.52 16 4 C 0.50 11.19 7.67 87.66 0.67 11.86 16 5 O -0.56 -20.33 13.76 20.42 0.28 -20.05 16 6 C -0.15 -2.00 4.74 29.10 0.14 -1.87 16 7 C 0.51 12.60 7.81 87.66 0.68 13.28 16 8 O -0.54 -21.07 13.89 20.40 0.28 -20.79 16 9 N -0.70 -13.62 5.16 -441.78 -2.28 -15.89 16 10 C 0.24 6.23 3.23 45.15 0.15 6.38 16 11 H 0.10 3.00 7.67 -2.39 -0.02 2.98 16 12 C -0.09 -1.91 6.24 31.32 0.20 -1.72 16 13 C 0.11 3.67 1.64 3.94 0.01 3.68 16 14 C 0.12 4.35 8.18 83.47 0.68 5.03 16 15 N -0.64 -30.56 3.79 -738.26 -2.79 -33.35 16 16 C -0.23 -12.47 10.74 84.03 0.90 -11.57 16 17 H 0.08 4.17 7.83 -2.91 -0.02 4.14 16 18 C -0.06 -3.11 5.50 84.86 0.47 -2.64 16 19 N -0.95 -54.39 11.51 21.65 0.25 -54.14 16 20 Si 0.97 44.77 29.55 68.60 2.03 46.79 16 21 H -0.29 -13.48 7.11 99.48 0.71 -12.78 16 22 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 23 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 24 C 0.16 6.86 6.94 83.56 0.58 7.44 16 25 N -0.44 -16.83 3.42 -473.24 -1.62 -18.45 16 26 C -0.02 -0.92 12.03 82.99 1.00 0.08 16 27 C -0.04 -1.70 11.86 83.51 0.99 -0.71 16 28 N -0.50 -20.70 11.25 -187.09 -2.11 -22.80 16 29 C 0.16 5.77 8.22 138.30 1.14 6.91 16 30 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.10 0.71 8.07 -2.38 -0.02 0.69 16 32 H 0.05 0.93 7.42 -2.39 -0.02 0.91 16 33 H 0.07 0.13 8.14 -2.39 -0.02 0.11 16 34 H 0.09 0.01 8.07 -2.39 -0.02 -0.01 16 35 H 0.10 -0.13 6.44 -2.39 -0.02 -0.15 16 36 H 0.17 0.54 7.40 -2.39 -0.02 0.52 16 37 H 0.15 1.12 8.11 -2.39 -0.02 1.11 16 38 H 0.42 4.33 8.38 -92.70 -0.78 3.55 16 39 H 0.15 1.97 7.87 -2.38 -0.02 1.96 16 40 H 0.13 1.87 7.80 -2.39 -0.02 1.85 16 41 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 42 H 0.09 2.78 7.98 -2.39 -0.02 2.76 16 43 H 0.25 14.11 8.31 -92.71 -0.77 13.34 16 44 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 45 H 0.04 2.04 7.15 -2.39 -0.02 2.02 16 46 H 0.15 6.75 8.06 -2.91 -0.02 6.72 16 47 H 0.19 6.12 8.06 -2.91 -0.02 6.09 16 Total: -1.00 -95.16 389.58 1.66 -93.50 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: 0.22 Total: 16.75 kcal Atomic # 6 Polarization: 29.91 SS G_CDS: 10.24 Total: 40.15 kcal Atomic # 7 Polarization: -144.96 SS G_CDS: -11.40 Total: -156.36 kcal Atomic # 8 Polarization: -41.40 SS G_CDS: 0.56 Total: -40.84 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.79 kcal Total: -95.16 1.66 -93.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101646730.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.697 kcal (2) G-P(sol) polarization free energy of solvation -95.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.12 seconds