Wall clock time and date at job start Wed Apr 1 2020 05:24:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.34257 * 125.75529 * 2 1 4 4 C 1.38041 * 107.41467 * 180.02562 * 3 2 1 5 5 C 1.47429 * 126.41358 * 179.97438 * 4 3 2 6 6 O 1.21608 * 119.99908 * 359.97438 * 5 4 3 7 7 N 1.34777 * 120.00199 * 179.97438 * 5 4 3 8 8 C 1.46499 * 119.99928 * 179.97438 * 7 5 4 9 9 H 1.09001 * 110.66728 * 37.02304 * 8 7 5 10 10 C 1.54845 * 110.61007 * 159.96465 * 8 7 5 11 11 C 1.55847 * 103.51643 * 118.51165 * 10 8 7 12 12 H 1.08995 * 115.58170 * 158.89156 * 11 10 8 13 13 C 1.55848 * 105.71266 * 288.08618 * 11 10 8 14 14 C 1.55864 * 103.04286 * 71.03567 * 13 11 10 15 15 C 1.55842 * 103.60348 * 0.88340 * 14 13 11 16 16 H 1.09000 * 116.15396 * 158.62120 * 15 14 13 17 17 N 1.50650 * 101.02866 * 32.99356 * 11 10 8 18 18 C 1.46900 * 110.99991 * 62.34571 * 17 11 10 19 19 C 1.50702 * 109.46995 * 81.91037 * 18 17 11 20 20 O 1.21295 * 119.99743 * 359.97438 * 19 18 17 21 21 N 1.34774 * 120.00154 * 180.02562 * 19 18 17 22 22 C 1.37106 * 119.99983 * 179.97438 * 21 19 18 23 23 H 1.07996 * 119.99876 * 359.97438 * 22 21 19 24 24 C 1.38948 * 119.99677 * 180.02562 * 22 21 19 25 25 N 1.31410 * 120.00128 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 119.99642 * 179.97438 * 24 22 21 27 27 H 1.48496 * 109.47293 * 89.99980 * 26 24 22 28 28 H 1.48502 * 109.46809 * 210.00009 * 26 24 22 29 29 H 1.48502 * 109.47081 * 329.99396 * 26 24 22 30 30 C 1.41286 * 107.17349 * 0.23377 * 4 3 2 31 31 N 1.30449 * 108.02489 * 359.59438 * 30 4 3 32 32 H 1.08995 * 109.46906 * 90.00430 * 1 2 3 33 33 H 1.09004 * 109.46812 * 210.00827 * 1 2 3 34 34 H 1.09000 * 109.46970 * 330.00164 * 1 2 3 35 35 H 1.07995 * 126.29025 * 359.96749 * 3 2 1 36 36 H 0.97001 * 120.00073 * 0.02562 * 7 5 4 37 37 H 1.08997 * 110.61190 * 237.01957 * 10 8 7 38 38 H 1.08996 * 110.60951 * 0.02562 * 10 8 7 39 39 H 1.08997 * 110.61350 * 190.42275 * 13 11 10 40 40 H 1.08997 * 110.61507 * 313.25073 * 13 11 10 41 41 H 1.09002 * 111.08650 * 242.09632 * 14 13 11 42 42 H 1.08995 * 110.05332 * 119.17276 * 14 13 11 43 43 H 1.08997 * 109.47296 * 201.90748 * 18 17 11 44 44 H 1.08998 * 109.47400 * 321.91020 * 18 17 11 45 45 H 0.96997 * 119.99811 * 359.97438 * 21 19 18 46 46 H 0.97004 * 120.00047 * 180.02562 * 25 24 22 47 47 H 1.08003 * 125.98904 * 179.74208 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2496 1.0895 0.0000 4 6 3.5599 0.6552 -0.0006 5 6 4.7639 1.5059 -0.0013 6 8 4.6527 2.7169 -0.0019 7 7 5.9878 0.9416 -0.0013 8 6 7.1842 1.7871 -0.0026 9 1 7.0287 2.6747 0.6107 10 6 8.4154 0.9902 0.4941 11 6 9.3826 1.0150 -0.7277 12 1 10.4329 0.8330 -0.5003 13 6 8.7488 0.0637 -1.7871 14 6 7.5011 0.8610 -2.2741 15 6 7.5721 2.1869 -1.4582 16 1 7.0294 3.0361 -1.8734 17 7 9.0622 2.3619 -1.3216 18 6 9.3811 3.4423 -0.3787 19 6 10.8539 3.7534 -0.4508 20 8 11.5677 3.1355 -1.2124 21 7 11.3781 4.7175 0.3316 22 6 12.7181 5.0001 0.2664 23 1 13.3536 4.4500 -0.4117 24 6 13.2586 5.9937 1.0735 25 7 12.4853 6.6628 1.8989 26 14 15.0844 6.3783 0.9851 27 1 15.3203 7.4278 -0.0387 28 1 15.5526 6.8635 2.3083 29 1 15.8319 5.1494 0.6157 30 6 3.5311 -0.7574 -0.0065 31 7 2.2827 -1.1357 -0.0004 32 1 -0.3633 -0.0001 -1.0276 33 1 -0.3633 -0.8900 0.5140 34 1 -0.3633 0.8900 0.5138 35 1 1.9167 2.1169 -0.0005 36 1 6.0766 -0.0243 -0.0012 37 1 8.8701 1.4828 1.3535 38 1 8.1355 -0.0339 0.7408 39 1 9.4481 -0.1236 -2.6018 40 1 8.4398 -0.8738 -1.3249 41 1 6.5801 0.3223 -2.0516 42 1 7.5803 1.0630 -3.3422 43 1 8.8086 4.3325 -0.6390 44 1 9.1251 3.1287 0.6333 45 1 10.8073 5.2113 0.9409 46 1 12.8626 7.3566 2.4621 47 1 4.3919 -1.4097 -0.0123 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108910740.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:24:42 Heat of formation + Delta-G solvation = 18.301132 kcal Electronic energy + Delta-G solvation = -30462.938625 eV Core-core repulsion = 26261.345099 eV Total energy + Delta-G solvation = -4201.593527 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -42.47853 -42.06379 -40.00493 -39.43849 -35.96291 -35.31501 -34.24850 -33.39640 -32.85000 -31.49713 -30.76526 -29.70337 -28.19417 -27.59861 -25.94294 -24.10207 -23.00005 -21.97126 -21.78973 -21.23222 -20.51440 -20.42829 -19.78051 -18.94513 -17.83531 -17.27571 -17.10882 -16.83128 -16.58817 -16.45699 -16.35872 -15.90700 -15.62272 -15.47970 -15.26213 -14.90626 -14.45216 -14.12224 -13.88006 -13.73388 -13.56415 -13.51162 -13.43275 -13.27988 -13.20820 -12.95099 -12.69395 -12.58596 -12.48157 -12.39482 -12.10997 -12.10329 -11.83267 -11.66658 -11.47317 -11.13583 -10.90649 -10.57430 -10.42086 -10.19611 -9.99342 -9.70190 -9.24892 -8.44827 -5.93739 0.55444 1.18872 1.38487 1.41343 1.45836 1.54585 2.07357 2.25053 2.30463 2.49036 2.79413 3.21101 3.33560 3.51239 3.59302 3.64249 3.82841 3.89089 4.06445 4.13439 4.18698 4.21542 4.24810 4.30349 4.39923 4.43039 4.43630 4.53429 4.58085 4.59298 4.71380 4.73624 4.76400 4.87510 4.97545 5.06145 5.23394 5.27933 5.31369 5.41799 5.42655 5.54175 5.80265 5.87480 5.87552 6.09123 6.50972 6.62298 6.68205 7.14531 7.35294 7.58293 8.14480 8.72778 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.023293 B = 0.002096 C = 0.001984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.780050 B =13356.752821 C =14106.657383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.363 5.363 3 C 0.129 3.871 4 C -0.315 4.315 5 C 0.595 3.405 6 O -0.591 6.591 7 N -0.695 5.695 8 C 0.127 3.873 9 H 0.073 0.927 10 C -0.150 4.150 11 C 0.045 3.955 12 H 0.090 0.910 13 C -0.103 4.103 14 C -0.102 4.102 15 C 0.034 3.966 16 H 0.101 0.899 17 N -0.490 5.490 18 C 0.036 3.964 19 C 0.446 3.554 20 O -0.614 6.614 21 N -0.577 5.577 22 C -0.331 4.331 23 H 0.079 0.921 24 C -0.016 4.016 25 N -0.922 5.922 26 Si 0.994 3.006 27 H -0.272 1.272 28 H -0.270 1.270 29 H -0.272 1.272 30 C 0.088 3.912 31 N -0.327 5.327 32 H 0.093 0.907 33 H 0.098 0.902 34 H 0.116 0.884 35 H 0.203 0.797 36 H 0.415 0.585 37 H 0.070 0.930 38 H 0.115 0.885 39 H 0.061 0.939 40 H 0.102 0.898 41 H 0.095 0.905 42 H 0.061 0.939 43 H 0.093 0.907 44 H 0.077 0.923 45 H 0.394 0.606 46 H 0.277 0.723 47 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.807 -16.963 -1.068 30.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.141 5.141 3 C -0.024 4.024 4 C -0.330 4.330 5 C 0.385 3.615 6 O -0.473 6.473 7 N -0.347 5.347 8 C 0.020 3.980 9 H 0.091 0.909 10 C -0.189 4.189 11 C -0.064 4.064 12 H 0.108 0.892 13 C -0.141 4.141 14 C -0.140 4.140 15 C -0.076 4.076 16 H 0.119 0.881 17 N -0.213 5.213 18 C -0.096 4.096 19 C 0.234 3.766 20 O -0.500 6.500 21 N -0.215 5.215 22 C -0.460 4.460 23 H 0.097 0.903 24 C -0.215 4.215 25 N -0.563 5.563 26 Si 0.818 3.182 27 H -0.198 1.198 28 H -0.195 1.195 29 H -0.197 1.197 30 C -0.099 4.099 31 N -0.147 5.147 32 H 0.111 0.889 33 H 0.117 0.883 34 H 0.134 0.866 35 H 0.220 0.780 36 H 0.253 0.747 37 H 0.088 0.912 38 H 0.133 0.867 39 H 0.080 0.920 40 H 0.120 0.880 41 H 0.114 0.886 42 H 0.080 0.920 43 H 0.111 0.889 44 H 0.095 0.905 45 H 0.228 0.772 46 H 0.086 0.914 47 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -26.022 -17.242 -1.975 31.279 hybrid contribution 1.041 1.295 1.134 2.012 sum -24.982 -15.947 -0.841 29.650 Atomic orbital electron populations 1.22381 0.71131 1.06543 1.05303 1.48772 1.08582 1.03156 1.53558 1.23322 0.90136 0.94657 0.94272 1.20199 0.93128 0.94038 1.25645 1.17521 0.82983 0.86531 0.74503 1.90777 1.87400 1.16129 1.52967 1.45570 1.03840 1.10469 1.74834 1.22472 0.84626 0.93927 0.96994 0.90920 1.23447 0.94302 1.02668 0.98445 1.24423 0.98401 0.89795 0.93748 0.89233 1.22749 0.96290 0.97415 0.97638 1.22682 0.98537 0.93654 0.99165 1.24856 0.87627 0.99126 0.95961 0.88077 1.67473 1.11389 1.02278 1.40167 1.21959 0.92730 0.97423 0.97488 1.20694 0.90698 0.82366 0.82884 1.90474 1.63169 1.53997 1.42361 1.41950 1.09036 1.33275 1.37199 1.19657 0.85205 1.18648 1.22526 0.90309 1.26064 1.04583 0.95622 0.95239 1.69687 1.37726 1.24084 1.24846 0.84911 0.76880 0.78464 0.77962 1.19769 1.19487 1.19661 1.24500 0.95958 0.93506 0.95940 1.77158 1.02604 1.09030 1.25880 0.88882 0.88306 0.86579 0.78007 0.74705 0.91183 0.86702 0.92023 0.87976 0.88629 0.92008 0.88919 0.90500 0.77239 0.91373 0.76527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.31 11.44 127.77 1.46 1.78 16 2 N -0.36 -4.57 3.98 -367.77 -1.46 -6.03 16 3 C 0.13 1.87 11.30 84.28 0.95 2.82 16 4 C -0.31 -5.36 6.13 -20.15 -0.12 -5.48 16 5 C 0.60 12.96 7.81 86.66 0.68 13.64 16 6 O -0.59 -18.06 16.63 -4.05 -0.07 -18.13 16 7 N -0.70 -11.89 3.63 -438.17 -1.59 -13.47 16 8 C 0.13 2.91 2.27 46.61 0.11 3.02 16 9 H 0.07 2.03 7.19 -2.39 -0.02 2.02 16 10 C -0.15 -3.22 5.41 32.21 0.17 -3.05 16 11 C 0.04 1.26 4.51 46.15 0.21 1.47 16 12 H 0.09 3.10 7.95 -2.39 -0.02 3.08 16 13 C -0.10 -2.15 6.53 32.57 0.21 -1.94 16 14 C -0.10 -2.12 6.34 32.57 0.21 -1.92 16 15 C 0.03 0.90 4.80 46.14 0.22 1.12 16 16 H 0.10 2.96 8.14 -2.39 -0.02 2.94 16 17 N -0.49 -16.70 5.08 -808.86 -4.11 -20.81 16 18 C 0.04 1.36 4.82 85.56 0.41 1.77 16 19 C 0.45 22.39 7.72 87.66 0.68 23.07 16 20 O -0.61 -35.34 15.58 -3.07 -0.05 -35.39 16 21 N -0.58 -30.99 5.29 -306.98 -1.62 -32.61 16 22 C -0.33 -19.38 9.68 84.04 0.81 -18.56 16 23 H 0.08 4.90 7.16 -2.91 -0.02 4.88 16 24 C -0.02 -0.87 5.50 84.93 0.47 -0.40 16 25 N -0.92 -51.31 13.05 21.66 0.28 -51.02 16 26 Si 0.99 44.08 29.55 68.60 2.03 46.10 16 27 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 28 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 29 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 30 C 0.09 1.18 11.50 85.65 0.99 2.17 16 31 N -0.33 -5.26 12.50 -56.28 -0.70 -5.96 16 32 H 0.09 0.14 8.14 -2.39 -0.02 0.12 16 33 H 0.10 0.28 8.14 -2.38 -0.02 0.27 16 34 H 0.12 -0.12 8.14 -2.39 -0.02 -0.14 16 35 H 0.20 2.16 8.06 -2.91 -0.02 2.14 16 36 H 0.41 4.15 6.97 -92.71 -0.65 3.50 16 37 H 0.07 1.71 6.95 -2.39 -0.02 1.69 16 38 H 0.11 1.62 7.38 -2.39 -0.02 1.60 16 39 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.10 1.35 7.86 -2.39 -0.02 1.33 16 41 H 0.10 1.47 6.48 -2.39 -0.02 1.45 16 42 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 43 H 0.09 3.38 8.09 -2.39 -0.02 3.36 16 44 H 0.08 2.62 5.10 -2.39 -0.01 2.60 16 45 H 0.39 20.32 7.90 -92.71 -0.73 19.59 16 46 H 0.28 14.40 8.31 -92.71 -0.77 13.63 16 47 H 0.22 1.21 7.50 -2.91 -0.02 1.19 16 Total: -1.00 -82.53 384.10 -0.19 -82.72 By element: Atomic # 1 Polarization: 35.45 SS G_CDS: -0.35 Total: 35.10 kcal Atomic # 6 Polarization: 12.05 SS G_CDS: 7.45 Total: 19.50 kcal Atomic # 7 Polarization: -120.70 SS G_CDS: -9.21 Total: -129.91 kcal Atomic # 8 Polarization: -53.40 SS G_CDS: -0.12 Total: -53.52 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.10 kcal Total: -82.53 -0.19 -82.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108910740.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.020 kcal (2) G-P(sol) polarization free energy of solvation -82.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.718 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds