Wall clock time and date at job start Wed Apr 1 2020 05:24:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.28450 * 125.19060 * 2 1 4 4 C 1.30861 * 110.92683 * 180.27995 * 3 2 1 5 5 C 1.39667 * 107.86326 * 359.70658 * 4 3 2 6 6 C 1.36595 * 125.19367 * 179.78106 * 2 1 3 7 7 C 1.47164 * 126.88252 * 0.02562 * 6 2 1 8 8 O 1.21627 * 119.99977 * 4.65978 * 7 6 2 9 9 N 1.34777 * 119.99915 * 184.65726 * 7 6 2 10 10 C 1.46503 * 119.99807 * 174.94372 * 9 7 6 11 11 H 1.08998 * 110.54651 * 42.45699 * 10 9 7 12 12 C 1.54837 * 110.74526 * 165.41381 * 10 9 7 13 13 C 1.55851 * 103.51842 * 118.57020 * 12 10 9 14 14 H 1.09000 * 116.14994 * 159.22475 * 13 12 10 15 15 C 1.55849 * 105.03341 * 288.27162 * 13 12 10 16 16 C 1.54837 * 103.51742 * 71.72553 * 15 13 12 17 17 C 1.55843 * 103.52028 * 0.02562 * 16 15 13 18 18 H 1.09002 * 115.58219 * 158.88898 * 17 16 15 19 19 N 1.50651 * 101.03048 * 32.99175 * 17 16 15 20 20 C 1.46898 * 110.99903 * 62.34590 * 19 17 16 21 21 C 1.50695 * 109.46862 * 68.42004 * 20 19 17 22 22 O 1.21290 * 120.00261 * 355.49842 * 21 20 19 23 23 N 1.34783 * 120.00098 * 175.49962 * 21 20 19 24 24 C 1.37094 * 119.99994 * 179.97438 * 23 21 20 25 25 H 1.07999 * 120.00564 * 0.27767 * 24 23 21 26 26 C 1.38959 * 119.99747 * 179.97438 * 24 23 21 27 27 N 1.31415 * 120.00020 * 180.02562 * 26 24 23 28 28 Si 1.86797 * 120.00005 * 0.02562 * 26 24 23 29 29 H 1.48505 * 109.47230 * 90.00031 * 28 26 24 30 30 H 1.48495 * 109.47383 * 209.99657 * 28 26 24 31 31 H 1.48493 * 109.47416 * 329.99981 * 28 26 24 32 32 H 1.08997 * 109.47265 * 274.82066 * 1 2 3 33 33 H 1.08993 * 109.47196 * 34.82448 * 1 2 3 34 34 H 1.09005 * 109.46578 * 154.82080 * 1 2 3 35 35 H 1.08000 * 126.06315 * 179.74874 * 4 3 2 36 36 H 1.08004 * 127.31845 * 180.02562 * 5 4 3 37 37 H 0.97001 * 120.00153 * 354.94091 * 9 7 6 38 38 H 1.09007 * 110.61315 * 0.06668 * 12 10 9 39 39 H 1.08997 * 110.61739 * 237.07875 * 12 10 9 40 40 H 1.08996 * 110.61517 * 190.23469 * 15 13 12 41 41 H 1.08998 * 110.61466 * 313.22154 * 15 13 12 42 42 H 1.09003 * 110.61108 * 118.51256 * 16 15 13 43 43 H 1.08998 * 110.61363 * 241.33193 * 16 15 13 44 44 H 1.09003 * 109.47320 * 308.41922 * 20 19 17 45 45 H 1.09000 * 109.47266 * 188.41849 * 20 19 17 46 46 H 0.97005 * 119.99749 * 359.97438 * 23 21 20 47 47 H 0.96994 * 119.99827 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2052 1.0497 0.0000 4 6 3.4735 0.7273 -0.0060 5 6 3.5612 -0.6666 -0.0034 6 6 2.2522 -1.1163 0.0043 7 6 1.7993 -2.5165 0.0091 8 8 0.6133 -2.7723 -0.0760 9 7 2.6988 -3.5153 0.1078 10 6 2.2429 -4.9027 0.2242 11 1 1.4166 -5.0926 -0.4608 12 6 3.4082 -5.8871 -0.0413 13 6 3.5377 -6.6689 1.3007 14 1 4.0413 -7.6341 1.2477 15 6 4.1465 -5.6464 2.3071 16 6 2.9812 -4.6620 2.5725 17 6 1.8238 -5.2216 1.6916 18 1 0.8196 -4.9130 1.9822 19 7 2.1016 -6.7009 1.7562 20 6 1.9972 -7.1963 3.1352 21 6 0.5601 -7.1331 3.5841 22 8 -0.2801 -6.6411 2.8609 23 7 0.2084 -7.6232 4.7894 24 6 -1.0989 -7.5652 5.1980 25 1 -1.8478 -7.1309 4.5524 26 6 -1.4616 -8.0711 6.4404 27 7 -2.7148 -8.0160 6.8320 28 14 -0.1677 -8.8294 7.5540 29 1 0.4112 -7.7776 8.4281 30 1 -0.7930 -9.8821 8.3941 31 1 0.9075 -9.4313 6.7253 32 1 -0.3633 0.0864 1.0240 33 1 -0.3633 0.8436 -0.5868 34 1 -0.3633 -0.9301 -0.4373 35 1 4.3047 1.4168 -0.0112 36 1 4.4595 -1.2661 -0.0065 37 1 3.6480 -3.3156 0.1016 38 1 4.3277 -5.3435 -0.2589 39 1 3.1596 -6.5650 -0.8578 40 1 4.4442 -6.1461 3.2289 41 1 4.9939 -5.1264 1.8603 42 1 2.7013 -4.6738 3.6259 43 1 3.2520 -3.6536 2.2599 44 1 2.6103 -6.5779 3.7909 45 1 2.3462 -8.2281 3.1780 46 1 0.8803 -8.0171 5.3677 47 1 -2.9679 -8.3687 7.6994 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001109025234.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:24:51 Heat of formation + Delta-G solvation = 57.995906 kcal Electronic energy + Delta-G solvation = -31226.879091 eV Core-core repulsion = 27027.006858 eV Total energy + Delta-G solvation = -4199.872232 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -42.75796 -41.27573 -39.14964 -37.97318 -34.91923 -33.94831 -33.42529 -31.85988 -31.56862 -30.77026 -30.16789 -28.80536 -27.31822 -26.62832 -24.20393 -23.54144 -22.31239 -21.62423 -20.58214 -19.99594 -19.67278 -19.19365 -18.24722 -18.11459 -16.59130 -16.48225 -16.33992 -15.96917 -15.72045 -15.49437 -14.97845 -14.79051 -14.54342 -14.04107 -13.88299 -13.75542 -13.54431 -13.26789 -13.00558 -12.93864 -12.60678 -12.52795 -12.37766 -12.19104 -12.07540 -11.80544 -11.61154 -11.47992 -11.21062 -11.08517 -10.99910 -10.77066 -10.58202 -10.30991 -10.17400 -9.95714 -9.53821 -9.50631 -9.31026 -9.11351 -8.63019 -8.23360 -8.14417 -6.29095 -3.80240 1.02943 2.13949 2.35638 2.93936 3.02909 3.04786 3.06717 3.15241 3.74485 3.89904 4.11356 4.26741 4.33192 4.42612 4.49844 4.66510 4.83553 4.93350 4.95448 4.98486 5.05248 5.10891 5.18512 5.23969 5.25407 5.30167 5.30624 5.37341 5.47534 5.52080 5.62511 5.67786 5.73483 5.86893 5.93079 5.94407 6.00468 6.12755 6.17602 6.29201 6.44490 6.44984 6.77352 7.07391 7.20247 7.60054 7.78362 7.95530 8.16999 8.62281 8.97678 9.44699 9.86001 10.84230 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013446 B = 0.002791 C = 0.002520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2081.884833 B =10028.377738 C =11109.698408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.254 5.254 3 N -0.280 5.280 4 C -0.005 4.005 5 C -0.194 4.194 6 C -0.034 4.034 7 C 0.589 3.411 8 O -0.526 6.526 9 N -0.703 5.703 10 C 0.149 3.851 11 H 0.101 0.899 12 C -0.114 4.114 13 C 0.040 3.960 14 H 0.117 0.883 15 C -0.154 4.154 16 C -0.160 4.160 17 C 0.053 3.947 18 H 0.135 0.865 19 N -0.466 5.466 20 C 0.022 3.978 21 C 0.454 3.546 22 O -0.559 6.559 23 N -0.592 5.592 24 C -0.303 4.303 25 H 0.120 0.880 26 C 0.041 3.959 27 N -0.882 5.882 28 Si 0.879 3.121 29 H -0.272 1.272 30 H -0.277 1.277 31 H -0.269 1.269 32 H 0.086 0.914 33 H 0.092 0.908 34 H 0.118 0.882 35 H 0.186 0.814 36 H 0.159 0.841 37 H 0.400 0.600 38 H 0.074 0.926 39 H 0.084 0.916 40 H 0.068 0.932 41 H 0.069 0.931 42 H 0.067 0.933 43 H 0.072 0.928 44 H 0.061 0.939 45 H 0.089 0.911 46 H 0.369 0.631 47 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.894 10.934 -13.172 26.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.042 5.042 3 N -0.113 5.113 4 C -0.180 4.180 5 C -0.223 4.223 6 C -0.163 4.163 7 C 0.374 3.626 8 O -0.402 6.402 9 N -0.355 5.355 10 C 0.045 3.955 11 H 0.119 0.881 12 C -0.153 4.153 13 C -0.069 4.069 14 H 0.134 0.866 15 C -0.193 4.193 16 C -0.199 4.199 17 C -0.056 4.056 18 H 0.152 0.848 19 N -0.189 5.189 20 C -0.110 4.110 21 C 0.239 3.761 22 O -0.440 6.440 23 N -0.232 5.232 24 C -0.431 4.431 25 H 0.137 0.863 26 C -0.162 4.162 27 N -0.523 5.523 28 Si 0.705 3.295 29 H -0.197 1.197 30 H -0.202 1.202 31 H -0.195 1.195 32 H 0.105 0.895 33 H 0.111 0.889 34 H 0.136 0.864 35 H 0.203 0.797 36 H 0.177 0.823 37 H 0.236 0.764 38 H 0.093 0.907 39 H 0.103 0.897 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.086 0.914 43 H 0.090 0.910 44 H 0.079 0.921 45 H 0.107 0.893 46 H 0.202 0.798 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 16.953 11.538 -13.883 24.765 hybrid contribution 2.535 -0.711 1.856 3.221 sum 19.488 10.828 -12.027 25.332 Atomic orbital electron populations 1.22499 0.72174 1.06562 1.05011 1.45677 1.08094 1.01650 1.48762 1.73232 1.04406 1.13780 1.19894 1.23557 0.93506 0.94957 1.05995 1.22207 0.95444 0.95655 1.09000 1.21470 0.91494 0.89830 1.13524 1.16919 0.85928 0.83009 0.76786 1.90841 1.16007 1.84168 1.49138 1.45753 1.09269 1.06323 1.74193 1.21994 0.97517 0.78199 0.97830 0.88079 1.22834 0.97196 0.97406 0.97817 1.24551 0.90169 0.97759 0.94391 0.86555 1.23310 0.98211 0.97585 1.00162 1.23305 0.95860 0.99552 1.01179 1.24882 0.99746 0.87485 0.93477 0.84777 1.67428 1.16117 1.15338 1.19983 1.22160 0.96931 1.01292 0.90663 1.19618 0.89380 0.84245 0.82814 1.90559 1.51724 1.47835 1.53880 1.42202 1.09723 1.55207 1.16070 1.19430 0.83800 1.37833 1.02082 0.86287 1.25033 0.96272 0.97820 0.97076 1.69623 1.15775 1.45803 1.21072 0.86682 0.81508 0.79876 0.81386 1.19732 1.20190 1.19492 0.89499 0.88911 0.86368 0.79703 0.82333 0.76437 0.90708 0.89691 0.91374 0.91263 0.91387 0.90974 0.92138 0.89261 0.79811 0.91660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.77 11.00 59.85 0.66 1.43 16 2 N -0.25 -3.01 3.75 -63.89 -0.24 -3.25 16 3 N -0.28 -3.26 11.90 30.59 0.36 -2.89 16 4 C 0.00 -0.04 12.03 -17.43 -0.21 -0.25 16 5 C -0.19 -1.67 10.50 -38.99 -0.41 -2.08 16 6 C -0.03 -0.39 6.96 -82.06 -0.57 -0.96 16 7 C 0.59 7.39 7.73 -12.64 -0.10 7.29 16 8 O -0.53 -8.51 14.37 5.25 0.08 -8.44 16 9 N -0.70 -6.94 3.57 -52.53 -0.19 -7.13 16 10 C 0.15 1.79 3.04 -65.41 -0.20 1.59 16 11 H 0.10 1.45 7.80 -51.93 -0.40 1.05 16 12 C -0.11 -1.01 6.21 -24.24 -0.15 -1.16 16 13 C 0.04 0.41 4.96 -62.53 -0.31 0.10 16 14 H 0.12 1.02 8.14 -51.93 -0.42 0.60 16 15 C -0.15 -1.46 5.63 -24.24 -0.14 -1.59 16 16 C -0.16 -1.97 5.51 -24.24 -0.13 -2.10 16 17 C 0.05 0.82 4.05 -62.53 -0.25 0.56 16 18 H 0.13 2.73 6.65 -51.93 -0.35 2.39 16 19 N -0.47 -7.12 5.36 -206.94 -1.11 -8.23 16 20 C 0.02 0.36 5.14 -4.98 -0.03 0.33 16 21 C 0.45 10.35 7.62 -10.98 -0.08 10.27 16 22 O -0.56 -15.04 14.11 5.55 0.08 -14.97 16 23 N -0.59 -14.21 5.09 -10.96 -0.06 -14.27 16 24 C -0.30 -8.65 10.16 -14.93 -0.15 -8.80 16 25 H 0.12 3.90 7.39 -52.49 -0.39 3.51 16 26 C 0.04 1.13 5.50 -17.46 -0.10 1.03 16 27 N -0.88 -26.07 13.96 55.50 0.77 -25.30 16 28 Si 0.88 19.50 27.74 -169.99 -4.71 14.79 16 29 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 30 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 31 H -0.27 -5.43 6.52 56.52 0.37 -5.06 16 32 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.12 1.30 5.97 -51.93 -0.31 0.99 16 35 H 0.19 1.04 8.06 -52.49 -0.42 0.62 16 36 H 0.16 0.81 7.58 -52.48 -0.40 0.41 16 37 H 0.40 2.67 7.17 -40.82 -0.29 2.38 16 38 H 0.07 0.46 7.30 -51.93 -0.38 0.08 16 39 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.07 0.65 7.33 -51.93 -0.38 0.27 16 41 H 0.07 0.50 7.82 -51.93 -0.41 0.09 16 42 H 0.07 0.96 7.22 -51.93 -0.37 0.58 16 43 H 0.07 0.79 6.61 -51.93 -0.34 0.45 16 44 H 0.06 0.89 4.86 -51.93 -0.25 0.64 16 45 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 46 H 0.37 7.78 5.76 -40.82 -0.24 7.54 16 47 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 373.15 15.07 5.62 5.62 Total: -1.00 -36.36 373.15 -7.78 -44.13 By element: Atomic # 1 Polarization: 20.47 SS G_CDS: -6.21 Total: 14.26 kcal Atomic # 6 Polarization: 7.84 SS G_CDS: -2.17 Total: 5.67 kcal Atomic # 7 Polarization: -60.62 SS G_CDS: -0.45 Total: -61.07 kcal Atomic # 8 Polarization: -23.56 SS G_CDS: 0.15 Total: -23.41 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -4.71 Total: 14.79 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -36.36 -7.78 -44.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001109025234.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.128 kcal (2) G-P(sol) polarization free energy of solvation -36.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.132 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds