Wall clock time and date at job start Wed Apr 1 2020 05:24:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.28450 * 125.19060 * 2 1 4 4 C 1.30861 * 110.92683 * 180.27995 * 3 2 1 5 5 C 1.39667 * 107.86326 * 359.70658 * 4 3 2 6 6 C 1.36595 * 125.19367 * 179.78106 * 2 1 3 7 7 C 1.47164 * 126.88252 * 0.02562 * 6 2 1 8 8 O 1.21627 * 119.99977 * 4.65978 * 7 6 2 9 9 N 1.34777 * 119.99915 * 184.65726 * 7 6 2 10 10 C 1.46503 * 119.99807 * 174.94372 * 9 7 6 11 11 H 1.08998 * 110.54651 * 42.45699 * 10 9 7 12 12 C 1.54837 * 110.74526 * 165.41381 * 10 9 7 13 13 C 1.55851 * 103.51842 * 118.57020 * 12 10 9 14 14 H 1.09000 * 116.14994 * 159.22475 * 13 12 10 15 15 C 1.55849 * 105.03341 * 288.27162 * 13 12 10 16 16 C 1.54837 * 103.51742 * 71.72553 * 15 13 12 17 17 C 1.55843 * 103.52028 * 0.02562 * 16 15 13 18 18 H 1.09002 * 115.58219 * 158.88898 * 17 16 15 19 19 N 1.50651 * 101.03048 * 32.99175 * 17 16 15 20 20 C 1.46898 * 110.99903 * 62.34590 * 19 17 16 21 21 C 1.50695 * 109.46862 * 68.42004 * 20 19 17 22 22 O 1.21290 * 120.00261 * 355.49842 * 21 20 19 23 23 N 1.34783 * 120.00098 * 175.49962 * 21 20 19 24 24 C 1.37094 * 119.99994 * 179.97438 * 23 21 20 25 25 H 1.07999 * 120.00564 * 0.27767 * 24 23 21 26 26 C 1.38959 * 119.99747 * 179.97438 * 24 23 21 27 27 N 1.31415 * 120.00020 * 180.02562 * 26 24 23 28 28 Si 1.86797 * 120.00005 * 0.02562 * 26 24 23 29 29 H 1.48505 * 109.47230 * 90.00031 * 28 26 24 30 30 H 1.48495 * 109.47383 * 209.99657 * 28 26 24 31 31 H 1.48493 * 109.47416 * 329.99981 * 28 26 24 32 32 H 1.08997 * 109.47265 * 274.82066 * 1 2 3 33 33 H 1.08993 * 109.47196 * 34.82448 * 1 2 3 34 34 H 1.09005 * 109.46578 * 154.82080 * 1 2 3 35 35 H 1.08000 * 126.06315 * 179.74874 * 4 3 2 36 36 H 1.08004 * 127.31845 * 180.02562 * 5 4 3 37 37 H 0.97001 * 120.00153 * 354.94091 * 9 7 6 38 38 H 1.09007 * 110.61315 * 0.06668 * 12 10 9 39 39 H 1.08997 * 110.61739 * 237.07875 * 12 10 9 40 40 H 1.08996 * 110.61517 * 190.23469 * 15 13 12 41 41 H 1.08998 * 110.61466 * 313.22154 * 15 13 12 42 42 H 1.09003 * 110.61108 * 118.51256 * 16 15 13 43 43 H 1.08998 * 110.61363 * 241.33193 * 16 15 13 44 44 H 1.09003 * 109.47320 * 308.41922 * 20 19 17 45 45 H 1.09000 * 109.47266 * 188.41849 * 20 19 17 46 46 H 0.97005 * 119.99749 * 359.97438 * 23 21 20 47 47 H 0.96994 * 119.99827 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2052 1.0497 0.0000 4 6 3.4735 0.7273 -0.0060 5 6 3.5612 -0.6666 -0.0034 6 6 2.2522 -1.1163 0.0043 7 6 1.7993 -2.5165 0.0091 8 8 0.6133 -2.7723 -0.0760 9 7 2.6988 -3.5153 0.1078 10 6 2.2429 -4.9027 0.2242 11 1 1.4166 -5.0926 -0.4608 12 6 3.4082 -5.8871 -0.0413 13 6 3.5377 -6.6689 1.3007 14 1 4.0413 -7.6341 1.2477 15 6 4.1465 -5.6464 2.3071 16 6 2.9812 -4.6620 2.5725 17 6 1.8238 -5.2216 1.6916 18 1 0.8196 -4.9130 1.9822 19 7 2.1016 -6.7009 1.7562 20 6 1.9972 -7.1963 3.1352 21 6 0.5601 -7.1331 3.5841 22 8 -0.2801 -6.6411 2.8609 23 7 0.2084 -7.6232 4.7894 24 6 -1.0989 -7.5652 5.1980 25 1 -1.8478 -7.1309 4.5524 26 6 -1.4616 -8.0711 6.4404 27 7 -2.7148 -8.0160 6.8320 28 14 -0.1677 -8.8294 7.5540 29 1 0.4112 -7.7776 8.4281 30 1 -0.7930 -9.8821 8.3941 31 1 0.9075 -9.4313 6.7253 32 1 -0.3633 0.0864 1.0240 33 1 -0.3633 0.8436 -0.5868 34 1 -0.3633 -0.9301 -0.4373 35 1 4.3047 1.4168 -0.0112 36 1 4.4595 -1.2661 -0.0065 37 1 3.6480 -3.3156 0.1016 38 1 4.3277 -5.3435 -0.2589 39 1 3.1596 -6.5650 -0.8578 40 1 4.4442 -6.1461 3.2289 41 1 4.9939 -5.1264 1.8603 42 1 2.7013 -4.6738 3.6259 43 1 3.2520 -3.6536 2.2599 44 1 2.6103 -6.5779 3.7909 45 1 2.3462 -8.2281 3.1780 46 1 0.8803 -8.0171 5.3677 47 1 -2.9679 -8.3687 7.6994 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001109025234.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:24:48 Heat of formation + Delta-G solvation = 27.049247 kcal Electronic energy + Delta-G solvation = -31228.221038 eV Core-core repulsion = 27027.006858 eV Total energy + Delta-G solvation = -4201.214180 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -43.53985 -42.29031 -40.34295 -39.66855 -36.12821 -35.81137 -34.23268 -33.78938 -32.77116 -31.75389 -31.03650 -29.76337 -28.25506 -28.01094 -25.86981 -24.53855 -23.11882 -22.49473 -21.65145 -21.25662 -20.91232 -20.56571 -19.93293 -19.08918 -17.76394 -17.47145 -17.36157 -17.15723 -16.90526 -16.69487 -16.56762 -15.81128 -15.67049 -15.36924 -15.14261 -14.79474 -14.67909 -14.52498 -14.39838 -14.18871 -13.79036 -13.67706 -13.38224 -13.30601 -13.26329 -13.06572 -12.68426 -12.56894 -12.50053 -12.43572 -12.00173 -11.91599 -11.85852 -11.78949 -11.50091 -11.22369 -11.13794 -10.43522 -10.38106 -10.26637 -10.07983 -9.98459 -9.46813 -8.43580 -6.04696 0.18792 1.27077 1.33183 1.34402 1.42472 1.64445 1.95066 2.05984 2.15683 2.21024 2.68828 3.11677 3.16615 3.51944 3.54250 3.61071 3.66901 3.89185 4.07306 4.13931 4.14346 4.20469 4.24137 4.33162 4.34775 4.35833 4.39567 4.48543 4.55351 4.56781 4.64579 4.82178 4.84355 4.90721 4.97509 5.11073 5.12022 5.21841 5.31944 5.42095 5.50967 5.53789 5.68843 5.75166 5.87974 6.03218 6.37658 6.57827 6.86702 7.01712 7.09824 7.37759 7.96975 8.74695 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013446 B = 0.002791 C = 0.002520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2081.884833 B =10028.377738 C =11109.698408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.274 5.274 3 N -0.306 5.306 4 C -0.005 4.005 5 C -0.169 4.169 6 C -0.063 4.063 7 C 0.584 3.416 8 O -0.577 6.577 9 N -0.680 5.680 10 C 0.156 3.844 11 H 0.062 0.938 12 C -0.101 4.101 13 C 0.047 3.953 14 H 0.147 0.853 15 C -0.142 4.142 16 C -0.154 4.154 17 C 0.038 3.962 18 H 0.062 0.938 19 N -0.498 5.498 20 C 0.037 3.963 21 C 0.448 3.552 22 O -0.611 6.611 23 N -0.593 5.593 24 C -0.328 4.328 25 H 0.049 0.951 26 C -0.018 4.018 27 N -0.937 5.937 28 Si 0.968 3.032 29 H -0.257 1.257 30 H -0.274 1.274 31 H -0.229 1.229 32 H 0.083 0.917 33 H 0.111 0.889 34 H 0.100 0.900 35 H 0.222 0.778 36 H 0.202 0.798 37 H 0.421 0.579 38 H 0.120 0.880 39 H 0.089 0.911 40 H 0.077 0.923 41 H 0.110 0.890 42 H 0.042 0.958 43 H 0.085 0.915 44 H 0.086 0.914 45 H 0.122 0.878 46 H 0.389 0.611 47 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.043 10.152 -12.995 31.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.062 5.062 3 N -0.139 5.139 4 C -0.180 4.180 5 C -0.198 4.198 6 C -0.191 4.191 7 C 0.371 3.629 8 O -0.457 6.457 9 N -0.333 5.333 10 C 0.051 3.949 11 H 0.080 0.920 12 C -0.139 4.139 13 C -0.060 4.060 14 H 0.164 0.836 15 C -0.180 4.180 16 C -0.193 4.193 17 C -0.072 4.072 18 H 0.080 0.920 19 N -0.222 5.222 20 C -0.095 4.095 21 C 0.236 3.764 22 O -0.495 6.495 23 N -0.235 5.235 24 C -0.458 4.458 25 H 0.067 0.933 26 C -0.216 4.216 27 N -0.578 5.578 28 Si 0.787 3.213 29 H -0.181 1.181 30 H -0.199 1.199 31 H -0.152 1.152 32 H 0.101 0.899 33 H 0.130 0.870 34 H 0.118 0.882 35 H 0.238 0.762 36 H 0.219 0.781 37 H 0.261 0.739 38 H 0.138 0.862 39 H 0.108 0.892 40 H 0.096 0.904 41 H 0.128 0.872 42 H 0.061 0.939 43 H 0.103 0.897 44 H 0.104 0.896 45 H 0.140 0.860 46 H 0.225 0.775 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 24.178 10.757 -13.730 29.812 hybrid contribution 0.183 -0.344 1.683 1.727 sum 24.361 10.414 -12.047 29.104 Atomic orbital electron populations 1.22438 0.72418 1.06378 1.04980 1.45805 1.08396 1.02021 1.49954 1.73216 1.05774 1.14148 1.20765 1.24282 0.93400 0.95980 1.04336 1.22740 0.95319 0.95785 1.05934 1.21552 0.92887 0.88947 1.15686 1.17282 0.85523 0.84167 0.75973 1.90829 1.18371 1.84984 1.51533 1.45504 1.09947 1.04991 1.72892 1.21745 0.98408 0.80029 0.94742 0.91950 1.22881 0.97141 0.96452 0.97425 1.24806 0.86830 0.99677 0.94735 0.83584 1.23308 0.97564 0.96496 1.00630 1.23244 0.95901 1.01302 0.98854 1.24531 0.97616 0.88530 0.96556 0.91954 1.67393 1.20596 1.15125 1.19071 1.22076 0.91517 1.03810 0.92097 1.21050 0.92113 0.81597 0.81607 1.90555 1.54356 1.49296 1.55304 1.42023 1.08261 1.56148 1.17061 1.18971 0.85018 1.39455 1.02318 0.93271 1.26171 0.99408 0.97561 0.98428 1.69818 1.19006 1.46902 1.22084 0.85330 0.78454 0.78956 0.78551 1.18132 1.19855 1.15183 0.89867 0.87022 0.88198 0.76173 0.78056 0.73887 0.86155 0.89221 0.90432 0.87161 0.93916 0.89665 0.89632 0.86011 0.77510 0.91134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.74 11.00 127.77 1.41 3.14 16 2 N -0.27 -6.65 3.75 -356.03 -1.33 -7.98 16 3 N -0.31 -6.86 11.90 -57.14 -0.68 -7.54 16 4 C 0.00 -0.07 12.03 85.18 1.02 0.95 16 5 C -0.17 -2.33 10.50 22.66 0.24 -2.09 16 6 C -0.06 -1.39 6.96 40.79 0.28 -1.10 16 7 C 0.58 15.24 7.73 86.59 0.67 15.91 16 8 O -0.58 -20.93 14.37 -4.12 -0.06 -20.99 16 9 N -0.68 -12.51 3.57 -438.34 -1.56 -14.07 16 10 C 0.16 3.72 3.04 46.62 0.14 3.86 16 11 H 0.06 1.96 7.80 -2.39 -0.02 1.94 16 12 C -0.10 -1.37 6.21 32.21 0.20 -1.17 16 13 C 0.05 0.74 4.96 46.14 0.23 0.97 16 14 H 0.15 1.58 8.14 -2.39 -0.02 1.56 16 15 C -0.14 -1.88 5.63 32.21 0.18 -1.70 16 16 C -0.15 -3.50 5.51 32.20 0.18 -3.33 16 17 C 0.04 1.20 4.05 46.16 0.19 1.38 16 18 H 0.06 2.89 6.65 -2.39 -0.02 2.87 16 19 N -0.50 -14.76 5.36 -808.64 -4.33 -19.09 16 20 C 0.04 1.15 5.14 85.56 0.44 1.59 16 21 C 0.45 21.34 7.62 87.65 0.67 22.01 16 22 O -0.61 -36.11 14.11 -3.06 -0.04 -36.15 16 23 N -0.59 -29.14 5.09 -306.98 -1.56 -30.71 16 24 C -0.33 -20.04 10.16 84.04 0.85 -19.18 16 25 H 0.05 3.60 7.39 -2.91 -0.02 3.58 16 26 C -0.02 -1.00 5.50 84.93 0.47 -0.54 16 27 N -0.94 -58.26 13.96 21.67 0.30 -57.95 16 28 Si 0.97 39.62 27.74 68.60 1.90 41.52 16 29 H -0.26 -9.93 7.11 99.48 0.71 -9.23 16 30 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 31 H -0.23 -7.81 6.52 99.48 0.65 -7.16 16 32 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.10 2.59 5.97 -2.38 -0.01 2.57 16 35 H 0.22 1.53 8.06 -2.91 -0.02 1.50 16 36 H 0.20 0.82 7.58 -2.91 -0.02 0.80 16 37 H 0.42 3.80 7.17 -92.71 -0.66 3.13 16 38 H 0.12 0.61 7.30 -2.38 -0.02 0.59 16 39 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.08 0.98 7.33 -2.39 -0.02 0.96 16 41 H 0.11 0.68 7.82 -2.39 -0.02 0.66 16 42 H 0.04 1.17 7.22 -2.39 -0.02 1.15 16 43 H 0.08 1.66 6.61 -2.39 -0.02 1.64 16 44 H 0.09 2.28 4.86 -2.39 -0.01 2.27 16 45 H 0.12 3.07 8.14 -2.39 -0.02 3.05 16 46 H 0.39 15.71 5.76 -92.70 -0.53 15.17 16 47 H 0.28 15.79 8.31 -92.71 -0.77 15.02 16 Total: -1.00 -95.19 373.15 -0.42 -95.62 By element: Atomic # 1 Polarization: 36.86 SS G_CDS: -0.22 Total: 36.64 kcal Atomic # 6 Polarization: 13.54 SS G_CDS: 7.17 Total: 20.70 kcal Atomic # 7 Polarization: -128.17 SS G_CDS: -9.17 Total: -137.35 kcal Atomic # 8 Polarization: -57.04 SS G_CDS: -0.10 Total: -57.14 kcal Atomic # 14 Polarization: 39.62 SS G_CDS: 1.90 Total: 41.52 kcal Total: -95.19 -0.42 -95.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001109025234.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.667 kcal (2) G-P(sol) polarization free energy of solvation -95.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds