Wall clock time and date at job start Wed Apr 1 2020 05:37:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34498 * 126.46923 * 2 1 4 4 N 1.30859 * 109.16051 * 179.97438 * 3 2 1 5 5 C 1.33321 * 109.68320 * 359.76872 * 4 3 2 6 6 C 1.36666 * 107.78748 * 0.37162 * 5 4 3 7 7 C 1.46760 * 126.84174 * 179.89794 * 6 5 4 8 8 O 1.21680 * 119.99844 * 185.07939 * 7 6 5 9 9 N 1.34775 * 120.00279 * 5.08133 * 7 6 5 10 10 C 1.46502 * 119.99760 * 185.27921 * 9 7 6 11 11 H 1.08992 * 110.67601 * 35.33414 * 10 9 7 12 12 C 1.54836 * 110.61216 * 158.29208 * 10 9 7 13 13 C 1.55851 * 103.51916 * 118.50333 * 12 10 9 14 14 H 1.09006 * 115.57980 * 158.88652 * 13 12 10 15 15 C 1.55840 * 105.03472 * 288.26831 * 13 12 10 16 16 C 1.54836 * 103.51915 * 71.72908 * 15 13 12 17 17 C 1.55852 * 110.61168 * 272.38426 * 10 9 7 18 18 H 1.09000 * 115.58052 * 82.60319 * 17 10 9 19 19 N 1.50641 * 101.03204 * 208.50134 * 17 10 9 20 20 C 1.46898 * 110.99943 * 297.65318 * 19 17 10 21 21 C 1.50707 * 109.47119 * 169.99707 * 20 19 17 22 22 O 1.21293 * 119.99825 * 0.02562 * 21 20 19 23 23 N 1.34776 * 119.99992 * 179.97438 * 21 20 19 24 24 C 1.37101 * 120.00194 * 179.97438 * 23 21 20 25 25 H 1.08003 * 119.99570 * 0.02562 * 24 23 21 26 26 C 1.38948 * 120.00036 * 180.02562 * 24 23 21 27 27 N 1.31414 * 119.99651 * 180.02562 * 26 24 23 28 28 Si 1.86795 * 120.00048 * 359.97438 * 26 24 23 29 29 H 1.48501 * 109.47016 * 90.00240 * 28 26 24 30 30 H 1.48495 * 109.47289 * 210.00012 * 28 26 24 31 31 H 1.48498 * 109.47632 * 330.00296 * 28 26 24 32 32 H 1.08999 * 109.47073 * 264.15151 * 1 2 3 33 33 H 1.09008 * 109.47123 * 24.14987 * 1 2 3 34 34 H 1.08995 * 109.47126 * 144.15011 * 1 2 3 35 35 H 1.07991 * 125.41971 * 0.02562 * 3 2 1 36 36 H 1.08000 * 126.10293 * 180.27871 * 5 4 3 37 37 H 0.96992 * 120.00224 * 5.27609 * 9 7 6 38 38 H 1.08999 * 110.60979 * 237.01136 * 12 10 9 39 39 H 1.09001 * 110.61480 * 359.83759 * 12 10 9 40 40 H 1.08997 * 110.61986 * 190.23765 * 15 13 12 41 41 H 1.09002 * 110.61621 * 313.22343 * 15 13 12 42 42 H 1.08999 * 110.61922 * 241.49638 * 16 15 13 43 43 H 1.09000 * 110.61435 * 118.50520 * 16 15 13 44 44 H 1.08995 * 109.47627 * 289.99487 * 20 19 17 45 45 H 1.08997 * 109.47294 * 49.99876 * 20 19 17 46 46 H 0.96998 * 120.00162 * 0.02562 * 23 21 20 47 47 H 0.96998 * 119.99311 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2645 1.0816 0.0000 4 7 3.5138 0.6923 0.0006 5 6 3.5691 -0.6398 0.0060 6 6 2.2862 -1.1109 0.0006 7 6 1.8649 -2.5167 0.0015 8 8 0.6853 -2.7984 -0.0971 9 7 2.7846 -3.4957 0.1117 10 6 2.3784 -4.8986 -0.0034 11 1 1.5752 -5.0082 -0.7319 12 6 3.5875 -5.7864 -0.3872 13 6 3.7191 -6.7642 0.8192 14 1 4.2585 -7.6899 0.6182 15 6 4.2650 -5.8915 1.9893 16 6 3.0559 -5.0036 2.3732 17 6 1.9411 -5.4587 1.3837 18 1 0.9160 -5.2354 1.6795 19 7 2.2761 -6.9186 1.2237 20 6 1.4880 -7.5241 0.1420 21 6 2.0171 -8.9040 -0.1532 22 8 2.9578 -9.3403 0.4760 23 7 1.4443 -9.6537 -1.1157 24 6 1.9259 -10.9088 -1.3847 25 1 2.7641 -11.2969 -0.8250 26 6 1.3356 -11.6815 -2.3773 27 7 1.7970 -12.8847 -2.6347 28 14 -0.1145 -11.0104 -3.3448 29 1 0.3818 -10.2917 -4.5458 30 1 -0.9903 -12.1330 -3.7665 31 1 -0.8878 -10.0729 -2.4914 32 1 -0.3633 -0.1047 1.0223 33 1 -0.3634 0.9378 -0.4205 34 1 -0.3633 -0.8329 -0.6018 35 1 1.9288 2.1080 0.0004 36 1 4.4673 -1.2394 0.0120 37 1 3.7154 -3.2715 0.2670 38 1 3.3835 -6.3360 -1.3061 39 1 4.4884 -5.1824 -0.4947 40 1 4.5625 -6.5187 2.8295 41 1 5.1004 -5.2775 1.6527 42 1 3.2920 -3.9496 2.2268 43 1 2.7542 -5.1909 3.4037 44 1 0.4441 -7.5931 0.4477 45 1 1.5645 -6.9066 -0.7529 46 1 0.6917 -9.3050 -1.6186 47 1 1.3847 -13.4242 -3.3274 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001109490082.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:37:36 Heat of formation + Delta-G solvation = 40.034959 kcal Electronic energy + Delta-G solvation = -31053.227602 eV Core-core repulsion = 26852.576525 eV Total energy + Delta-G solvation = -4200.651077 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.61778 -41.33137 -39.12883 -37.99296 -34.95586 -34.18517 -33.91550 -32.08827 -31.56937 -30.85947 -29.72604 -28.35427 -27.51970 -26.65156 -24.06890 -23.69128 -22.26941 -21.73539 -20.69753 -20.17268 -19.54909 -19.27237 -18.38792 -18.06682 -16.72795 -16.61443 -16.42084 -15.91281 -15.76851 -15.51491 -14.99295 -14.84069 -14.46054 -14.40751 -14.14972 -13.75998 -13.42776 -13.34196 -13.18678 -13.02678 -12.86132 -12.72595 -12.43187 -12.18486 -12.00973 -11.80625 -11.69383 -11.43810 -11.17308 -10.86593 -10.81385 -10.72369 -10.58037 -10.22372 -10.18438 -10.13545 -9.98502 -9.57074 -9.49123 -9.04792 -8.55342 -8.22229 -8.14139 -6.32340 -3.83643 0.91665 2.05995 2.44220 2.93901 2.99231 3.02837 3.06355 3.14820 3.71796 3.88982 4.09458 4.09883 4.26062 4.34992 4.44704 4.57056 4.62767 4.65719 4.76906 4.88754 4.95148 5.08156 5.10278 5.12571 5.18019 5.24465 5.35935 5.37445 5.53860 5.57147 5.66351 5.78438 5.84652 5.88065 5.89652 5.93145 6.02270 6.12867 6.16875 6.30510 6.46490 6.57902 6.81033 7.09440 7.13319 7.45636 7.56862 7.84111 8.13106 8.58536 8.93753 9.41285 9.81422 10.80661 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.016566 B = 0.002543 C = 0.002332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.816842 B =11006.457104 C =12004.864348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.427 5.427 3 C 0.205 3.795 4 N -0.497 5.497 5 C 0.037 3.963 6 C -0.086 4.086 7 C 0.594 3.406 8 O -0.543 6.543 9 N -0.700 5.700 10 C 0.115 3.885 11 H 0.095 0.905 12 C -0.165 4.165 13 C 0.057 3.943 14 H 0.141 0.859 15 C -0.116 4.116 16 C -0.112 4.112 17 C 0.036 3.964 18 H 0.114 0.886 19 N -0.464 5.464 20 C 0.017 3.983 21 C 0.454 3.546 22 O -0.562 6.562 23 N -0.590 5.590 24 C -0.304 4.304 25 H 0.120 0.880 26 C 0.042 3.958 27 N -0.881 5.881 28 Si 0.878 3.122 29 H -0.271 1.271 30 H -0.276 1.276 31 H -0.269 1.269 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.102 0.898 35 H 0.213 0.787 36 H 0.178 0.822 37 H 0.402 0.598 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.073 0.927 41 H 0.064 0.936 42 H 0.066 0.934 43 H 0.070 0.930 44 H 0.091 0.909 45 H 0.057 0.943 46 H 0.370 0.630 47 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.886 28.261 4.821 28.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.107 5.107 3 C -0.078 4.078 4 N -0.215 5.215 5 C -0.117 4.117 6 C -0.203 4.203 7 C 0.380 3.620 8 O -0.421 6.421 9 N -0.351 5.351 10 C 0.009 3.991 11 H 0.113 0.887 12 C -0.204 4.204 13 C -0.051 4.051 14 H 0.158 0.842 15 C -0.154 4.154 16 C -0.150 4.150 17 C -0.074 4.074 18 H 0.132 0.868 19 N -0.186 5.186 20 C -0.115 4.115 21 C 0.240 3.760 22 O -0.445 6.445 23 N -0.229 5.229 24 C -0.433 4.433 25 H 0.138 0.862 26 C -0.161 4.161 27 N -0.521 5.521 28 Si 0.704 3.296 29 H -0.197 1.197 30 H -0.202 1.202 31 H -0.194 1.194 32 H 0.100 0.900 33 H 0.108 0.892 34 H 0.121 0.879 35 H 0.229 0.771 36 H 0.195 0.805 37 H 0.238 0.762 38 H 0.100 0.900 39 H 0.098 0.902 40 H 0.092 0.908 41 H 0.083 0.917 42 H 0.085 0.915 43 H 0.088 0.912 44 H 0.109 0.891 45 H 0.074 0.926 46 H 0.203 0.797 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.771 27.655 5.539 28.215 hybrid contribution -1.557 0.525 -1.714 2.374 sum -2.328 28.180 3.825 28.534 Atomic orbital electron populations 1.22289 0.75102 1.05281 1.04752 1.45285 1.08422 1.05791 1.51204 1.25180 0.85557 0.93659 1.03360 1.70163 1.19037 1.12108 1.20164 1.22653 0.95156 0.91392 1.02542 1.20800 0.91553 0.88930 1.19002 1.16774 0.85646 0.83097 0.76466 1.90807 1.16800 1.83936 1.50561 1.45692 1.10979 1.05591 1.72840 1.22859 0.97852 0.79029 0.99384 0.88739 1.23608 0.97366 0.98243 1.01174 1.24707 0.90854 0.97850 0.91686 0.84165 1.22629 0.96601 0.97459 0.98759 1.22531 0.94771 0.98571 0.99141 1.24849 0.99559 0.88682 0.94324 0.86790 1.67558 1.02680 1.11224 1.37134 1.22211 0.99222 0.95560 0.94489 1.19567 0.86471 0.86765 0.83193 1.90516 1.29702 1.73034 1.51216 1.42219 1.30979 1.16150 1.33552 1.19420 1.16297 0.89193 1.18349 0.86230 1.25035 0.98105 0.95571 0.97420 1.69622 1.41262 1.09072 1.32106 0.86694 0.82750 0.79296 0.80821 1.19666 1.20151 1.19432 0.89992 0.89224 0.87903 0.77080 0.80504 0.76180 0.90041 0.90242 0.90778 0.91700 0.91546 0.91171 0.89063 0.92556 0.79714 0.91615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.39 10.59 59.85 0.63 1.02 16 2 N -0.43 -3.47 3.17 -121.97 -0.39 -3.86 16 3 C 0.20 1.50 12.52 -90.57 -1.13 0.36 16 4 N -0.50 -4.84 11.20 -14.43 -0.16 -5.00 16 5 C 0.04 0.33 11.36 -17.47 -0.20 0.13 16 6 C -0.09 -0.82 6.91 -82.15 -0.57 -1.39 16 7 C 0.59 6.45 7.78 -12.82 -0.10 6.35 16 8 O -0.54 -7.42 14.76 5.21 0.08 -7.34 16 9 N -0.70 -6.42 3.64 -52.68 -0.19 -6.61 16 10 C 0.11 1.29 2.25 -65.44 -0.15 1.15 16 11 H 0.09 1.22 6.78 -51.93 -0.35 0.86 16 12 C -0.16 -1.92 5.38 -24.24 -0.13 -2.05 16 13 C 0.06 0.82 4.13 -62.56 -0.26 0.56 16 14 H 0.14 2.50 6.26 -51.93 -0.33 2.18 16 15 C -0.12 -1.32 6.43 -24.25 -0.16 -1.47 16 16 C -0.11 -1.20 6.32 -24.24 -0.15 -1.35 16 17 C 0.04 0.45 4.83 -62.56 -0.30 0.14 16 18 H 0.11 1.46 8.14 -51.93 -0.42 1.04 16 19 N -0.46 -7.24 5.44 -207.01 -1.13 -8.37 16 20 C 0.02 0.29 5.24 -4.97 -0.03 0.26 16 21 C 0.45 10.08 7.53 -10.98 -0.08 10.00 16 22 O -0.56 -14.44 13.74 5.55 0.08 -14.37 16 23 N -0.59 -13.90 5.09 -10.96 -0.06 -13.95 16 24 C -0.30 -8.49 10.16 -14.93 -0.15 -8.64 16 25 H 0.12 3.81 7.39 -52.48 -0.39 3.42 16 26 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 27 N -0.88 -25.59 13.96 55.50 0.77 -24.82 16 28 Si 0.88 19.38 27.73 -169.99 -4.71 14.67 16 29 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 30 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 31 H -0.27 -5.46 6.52 56.52 0.37 -5.09 16 32 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.09 0.23 8.13 -51.92 -0.42 -0.19 16 34 H 0.10 0.79 6.72 -51.93 -0.35 0.45 16 35 H 0.21 0.65 8.06 -52.49 -0.42 0.22 16 36 H 0.18 1.07 7.50 -52.49 -0.39 0.68 16 37 H 0.40 2.73 6.97 -40.82 -0.28 2.45 16 38 H 0.08 1.06 7.37 -51.93 -0.38 0.68 16 39 H 0.08 0.74 7.37 -51.93 -0.38 0.35 16 40 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.06 0.58 7.82 -51.93 -0.41 0.17 16 42 H 0.07 0.60 6.45 -51.93 -0.33 0.27 16 43 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 45 H 0.06 0.84 4.87 -51.93 -0.25 0.59 16 46 H 0.37 7.76 5.76 -40.82 -0.24 7.52 16 47 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 372.86 15.07 5.62 5.62 Total: -1.00 -35.47 372.86 -9.17 -44.65 By element: Atomic # 1 Polarization: 19.48 SS G_CDS: -6.21 Total: 13.27 kcal Atomic # 6 Polarization: 8.98 SS G_CDS: -2.87 Total: 6.11 kcal Atomic # 7 Polarization: -61.46 SS G_CDS: -1.15 Total: -62.61 kcal Atomic # 8 Polarization: -21.86 SS G_CDS: 0.15 Total: -21.70 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -4.71 Total: 14.67 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -35.47 -9.17 -44.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001109490082.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.681 kcal (2) G-P(sol) polarization free energy of solvation -35.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds