Wall clock time and date at job start Wed Apr 1 2020 05:37:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34498 * 126.46923 * 2 1 4 4 N 1.30859 * 109.16051 * 179.97438 * 3 2 1 5 5 C 1.33321 * 109.68320 * 359.76872 * 4 3 2 6 6 C 1.36666 * 107.78748 * 0.37162 * 5 4 3 7 7 C 1.46760 * 126.84174 * 179.89794 * 6 5 4 8 8 O 1.21680 * 119.99844 * 185.07939 * 7 6 5 9 9 N 1.34775 * 120.00279 * 5.08133 * 7 6 5 10 10 C 1.46502 * 119.99760 * 185.27921 * 9 7 6 11 11 H 1.08992 * 110.67601 * 35.33414 * 10 9 7 12 12 C 1.54836 * 110.61216 * 158.29208 * 10 9 7 13 13 C 1.55851 * 103.51916 * 118.50333 * 12 10 9 14 14 H 1.09006 * 115.57980 * 158.88652 * 13 12 10 15 15 C 1.55840 * 105.03472 * 288.26831 * 13 12 10 16 16 C 1.54836 * 103.51915 * 71.72908 * 15 13 12 17 17 C 1.55852 * 110.61168 * 272.38426 * 10 9 7 18 18 H 1.09000 * 115.58052 * 82.60319 * 17 10 9 19 19 N 1.50641 * 101.03204 * 208.50134 * 17 10 9 20 20 C 1.46898 * 110.99943 * 297.65318 * 19 17 10 21 21 C 1.50707 * 109.47119 * 169.99707 * 20 19 17 22 22 O 1.21293 * 119.99825 * 0.02562 * 21 20 19 23 23 N 1.34776 * 119.99992 * 179.97438 * 21 20 19 24 24 C 1.37101 * 120.00194 * 179.97438 * 23 21 20 25 25 H 1.08003 * 119.99570 * 0.02562 * 24 23 21 26 26 C 1.38948 * 120.00036 * 180.02562 * 24 23 21 27 27 N 1.31414 * 119.99651 * 180.02562 * 26 24 23 28 28 Si 1.86795 * 120.00048 * 359.97438 * 26 24 23 29 29 H 1.48501 * 109.47016 * 90.00240 * 28 26 24 30 30 H 1.48495 * 109.47289 * 210.00012 * 28 26 24 31 31 H 1.48498 * 109.47632 * 330.00296 * 28 26 24 32 32 H 1.08999 * 109.47073 * 264.15151 * 1 2 3 33 33 H 1.09008 * 109.47123 * 24.14987 * 1 2 3 34 34 H 1.08995 * 109.47126 * 144.15011 * 1 2 3 35 35 H 1.07991 * 125.41971 * 0.02562 * 3 2 1 36 36 H 1.08000 * 126.10293 * 180.27871 * 5 4 3 37 37 H 0.96992 * 120.00224 * 5.27609 * 9 7 6 38 38 H 1.08999 * 110.60979 * 237.01136 * 12 10 9 39 39 H 1.09001 * 110.61480 * 359.83759 * 12 10 9 40 40 H 1.08997 * 110.61986 * 190.23765 * 15 13 12 41 41 H 1.09002 * 110.61621 * 313.22343 * 15 13 12 42 42 H 1.08999 * 110.61922 * 241.49638 * 16 15 13 43 43 H 1.09000 * 110.61435 * 118.50520 * 16 15 13 44 44 H 1.08995 * 109.47627 * 289.99487 * 20 19 17 45 45 H 1.08997 * 109.47294 * 49.99876 * 20 19 17 46 46 H 0.96998 * 120.00162 * 0.02562 * 23 21 20 47 47 H 0.96998 * 119.99311 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2645 1.0816 0.0000 4 7 3.5138 0.6923 0.0006 5 6 3.5691 -0.6398 0.0060 6 6 2.2862 -1.1109 0.0006 7 6 1.8649 -2.5167 0.0015 8 8 0.6853 -2.7984 -0.0971 9 7 2.7846 -3.4957 0.1117 10 6 2.3784 -4.8986 -0.0034 11 1 1.5752 -5.0082 -0.7319 12 6 3.5875 -5.7864 -0.3872 13 6 3.7191 -6.7642 0.8192 14 1 4.2585 -7.6899 0.6182 15 6 4.2650 -5.8915 1.9893 16 6 3.0559 -5.0036 2.3732 17 6 1.9411 -5.4587 1.3837 18 1 0.9160 -5.2354 1.6795 19 7 2.2761 -6.9186 1.2237 20 6 1.4880 -7.5241 0.1420 21 6 2.0171 -8.9040 -0.1532 22 8 2.9578 -9.3403 0.4760 23 7 1.4443 -9.6537 -1.1157 24 6 1.9259 -10.9088 -1.3847 25 1 2.7641 -11.2969 -0.8250 26 6 1.3356 -11.6815 -2.3773 27 7 1.7970 -12.8847 -2.6347 28 14 -0.1145 -11.0104 -3.3448 29 1 0.3818 -10.2917 -4.5458 30 1 -0.9903 -12.1330 -3.7665 31 1 -0.8878 -10.0729 -2.4914 32 1 -0.3633 -0.1047 1.0223 33 1 -0.3634 0.9378 -0.4205 34 1 -0.3633 -0.8329 -0.6018 35 1 1.9288 2.1080 0.0004 36 1 4.4673 -1.2394 0.0120 37 1 3.7154 -3.2715 0.2670 38 1 3.3835 -6.3360 -1.3061 39 1 4.4884 -5.1824 -0.4947 40 1 4.5625 -6.5187 2.8295 41 1 5.1004 -5.2775 1.6527 42 1 3.2920 -3.9496 2.2268 43 1 2.7542 -5.1909 3.4037 44 1 0.4441 -7.5931 0.4477 45 1 1.5645 -6.9066 -0.7529 46 1 0.6917 -9.3050 -1.6186 47 1 1.3847 -13.4242 -3.3274 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001109490082.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:37:34 Heat of formation + Delta-G solvation = 12.735168 kcal Electronic energy + Delta-G solvation = -31054.411410 eV Core-core repulsion = 26852.576525 eV Total energy + Delta-G solvation = -4201.834885 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -43.21119 -42.37094 -40.24058 -39.57708 -36.08642 -35.63680 -34.77737 -33.81557 -33.10344 -31.60302 -30.69029 -29.30038 -28.18310 -27.98802 -25.79864 -24.47116 -23.09857 -22.35738 -21.78532 -21.30355 -20.97543 -20.50482 -19.95426 -18.96134 -17.81479 -17.46806 -17.31659 -17.06238 -16.86097 -16.70221 -16.48281 -16.02464 -15.39957 -15.34295 -15.12544 -14.98009 -14.60001 -14.42869 -14.32211 -14.06296 -13.83916 -13.76579 -13.57397 -13.42874 -13.29732 -13.06806 -12.78235 -12.69597 -12.53735 -12.43335 -12.00954 -11.90909 -11.72014 -11.50618 -11.45787 -11.14890 -10.92814 -10.73425 -10.43527 -10.33671 -10.24293 -9.68541 -9.33296 -8.42414 -6.02534 0.27929 1.28754 1.32386 1.41598 1.48091 1.83105 1.92636 2.20713 2.24089 2.29264 2.62884 3.10076 3.13766 3.46438 3.56390 3.62736 3.78892 3.82228 3.96274 4.04194 4.08483 4.12381 4.17424 4.21216 4.36603 4.37104 4.39676 4.45660 4.46890 4.52211 4.71010 4.75091 4.78882 4.92352 4.99872 5.13119 5.19070 5.25090 5.33121 5.40465 5.47057 5.52001 5.73985 5.86510 6.00013 6.09148 6.40639 6.57965 6.86965 6.88115 7.09735 7.38084 7.94099 8.74994 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.016566 B = 0.002543 C = 0.002332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.816842 B =11006.457104 C =12004.864348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.433 5.433 3 C 0.216 3.784 4 N -0.532 5.532 5 C 0.042 3.958 6 C -0.112 4.112 7 C 0.596 3.404 8 O -0.576 6.576 9 N -0.686 5.686 10 C 0.128 3.872 11 H 0.082 0.918 12 C -0.154 4.154 13 C 0.044 3.956 14 H 0.097 0.903 15 C -0.108 4.108 16 C -0.103 4.103 17 C 0.038 3.962 18 H 0.113 0.887 19 N -0.490 5.490 20 C 0.030 3.970 21 C 0.456 3.544 22 O -0.602 6.602 23 N -0.593 5.593 24 C -0.324 4.324 25 H 0.059 0.941 26 C -0.013 4.013 27 N -0.932 5.932 28 Si 0.960 3.040 29 H -0.257 1.257 30 H -0.274 1.274 31 H -0.236 1.236 32 H 0.084 0.916 33 H 0.124 0.876 34 H 0.080 0.920 35 H 0.251 0.749 36 H 0.199 0.801 37 H 0.417 0.583 38 H 0.065 0.935 39 H 0.110 0.890 40 H 0.059 0.941 41 H 0.097 0.903 42 H 0.090 0.910 43 H 0.067 0.933 44 H 0.109 0.891 45 H 0.080 0.920 46 H 0.387 0.613 47 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.228 32.637 4.311 32.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.113 5.113 3 C -0.066 4.066 4 N -0.250 5.250 5 C -0.113 4.113 6 C -0.228 4.228 7 C 0.383 3.617 8 O -0.456 6.456 9 N -0.338 5.338 10 C 0.021 3.979 11 H 0.100 0.900 12 C -0.193 4.193 13 C -0.065 4.065 14 H 0.115 0.885 15 C -0.146 4.146 16 C -0.141 4.141 17 C -0.071 4.071 18 H 0.130 0.870 19 N -0.213 5.213 20 C -0.102 4.102 21 C 0.244 3.756 22 O -0.486 6.486 23 N -0.234 5.234 24 C -0.453 4.453 25 H 0.077 0.923 26 C -0.212 4.212 27 N -0.573 5.573 28 Si 0.780 3.220 29 H -0.181 1.181 30 H -0.199 1.199 31 H -0.159 1.159 32 H 0.103 0.897 33 H 0.142 0.858 34 H 0.099 0.901 35 H 0.267 0.733 36 H 0.216 0.784 37 H 0.255 0.745 38 H 0.084 0.916 39 H 0.128 0.872 40 H 0.078 0.922 41 H 0.115 0.885 42 H 0.109 0.891 43 H 0.085 0.915 44 H 0.127 0.873 45 H 0.098 0.902 46 H 0.222 0.778 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.093 32.060 5.051 32.523 hybrid contribution -1.014 -0.812 -1.447 1.945 sum -3.107 31.248 3.603 31.608 Atomic orbital electron populations 1.22396 0.73999 1.06231 1.04799 1.45507 1.09218 1.05613 1.50938 1.25978 0.84911 0.94879 1.00785 1.70202 1.20452 1.12550 1.21798 1.23067 0.95655 0.91483 1.01109 1.20717 0.92264 0.88674 1.21194 1.16954 0.85220 0.83779 0.75702 1.90795 1.18187 1.84461 1.52181 1.45480 1.11596 1.04382 1.72385 1.22535 0.97118 0.80018 0.98228 0.89953 1.23489 0.98960 0.97786 0.99054 1.24538 0.90127 0.97303 0.94492 0.88505 1.22606 0.97814 0.97150 0.97006 1.22516 0.93518 0.99588 0.98454 1.24872 1.00153 0.86546 0.95569 0.86956 1.67572 1.03320 1.13608 1.36793 1.22104 0.99822 0.92011 0.96259 1.20653 0.85158 0.88340 0.81456 1.90509 1.31381 1.74454 1.52255 1.42060 1.31848 1.14922 1.34585 1.18990 1.15802 0.91538 1.18964 0.92323 1.26046 1.01608 0.95460 0.98100 1.69797 1.43391 1.10961 1.33172 0.85430 0.77965 0.79230 0.79353 1.18110 1.19939 1.15946 0.89711 0.85756 0.90145 0.73317 0.78392 0.74480 0.91628 0.87218 0.92168 0.88502 0.89132 0.91451 0.87342 0.90203 0.77758 0.91166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.62 10.59 127.77 1.35 1.97 16 2 N -0.43 -5.92 3.17 -539.82 -1.71 -7.63 16 3 C 0.22 2.47 12.52 180.33 2.26 4.72 16 4 N -0.53 -8.88 11.20 -199.56 -2.24 -11.11 16 5 C 0.04 0.62 11.36 84.10 0.96 1.58 16 6 C -0.11 -1.89 6.91 40.01 0.28 -1.61 16 7 C 0.60 11.67 7.78 86.47 0.67 12.34 16 8 O -0.58 -14.93 14.76 -4.28 -0.06 -14.99 16 9 N -0.69 -10.66 3.64 -438.81 -1.60 -12.25 16 10 C 0.13 2.61 2.25 46.60 0.10 2.71 16 11 H 0.08 1.95 6.78 -2.39 -0.02 1.94 16 12 C -0.15 -3.34 5.38 32.21 0.17 -3.16 16 13 C 0.04 1.25 4.13 46.15 0.19 1.44 16 14 H 0.10 3.67 6.26 -2.38 -0.01 3.66 16 15 C -0.11 -2.26 6.43 32.20 0.21 -2.05 16 16 C -0.10 -1.95 6.32 32.21 0.20 -1.75 16 17 C 0.04 0.88 4.83 46.15 0.22 1.10 16 18 H 0.11 2.68 8.14 -2.39 -0.02 2.66 16 19 N -0.49 -15.10 5.44 -808.85 -4.40 -19.50 16 20 C 0.03 0.98 5.24 85.56 0.45 1.43 16 21 C 0.46 20.81 7.53 87.66 0.66 21.47 16 22 O -0.60 -32.79 13.74 -3.07 -0.04 -32.83 16 23 N -0.59 -28.38 5.09 -306.97 -1.56 -29.94 16 24 C -0.32 -19.01 10.16 84.04 0.85 -18.15 16 25 H 0.06 4.07 7.39 -2.91 -0.02 4.05 16 26 C -0.01 -0.75 5.50 84.93 0.47 -0.28 16 27 N -0.93 -56.38 13.96 21.66 0.30 -56.08 16 28 Si 0.96 39.49 27.73 68.60 1.90 41.39 16 29 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 30 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 31 H -0.24 -8.38 6.52 99.48 0.65 -7.73 16 32 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.12 0.21 8.13 -2.38 -0.02 0.19 16 34 H 0.08 1.15 6.72 -2.39 -0.02 1.14 16 35 H 0.25 0.46 8.06 -2.91 -0.02 0.43 16 36 H 0.20 1.74 7.50 -2.91 -0.02 1.71 16 37 H 0.42 4.10 6.97 -92.71 -0.65 3.45 16 38 H 0.06 1.65 7.37 -2.39 -0.02 1.64 16 39 H 0.11 1.69 7.37 -2.39 -0.02 1.67 16 40 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.10 1.40 7.82 -2.39 -0.02 1.39 16 42 H 0.09 1.30 6.45 -2.39 -0.02 1.29 16 43 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 44 H 0.11 3.22 8.14 -2.39 -0.02 3.20 16 45 H 0.08 2.27 4.87 -2.39 -0.01 2.26 16 46 H 0.39 15.69 5.76 -92.71 -0.53 15.16 16 47 H 0.28 15.43 8.31 -92.71 -0.77 14.65 16 Total: -1.00 -84.17 372.86 -0.56 -84.74 By element: Atomic # 1 Polarization: 36.65 SS G_CDS: -0.20 Total: 36.45 kcal Atomic # 6 Polarization: 12.72 SS G_CDS: 9.05 Total: 21.76 kcal Atomic # 7 Polarization: -125.31 SS G_CDS: -11.21 Total: -136.52 kcal Atomic # 8 Polarization: -47.72 SS G_CDS: -0.11 Total: -47.82 kcal Atomic # 14 Polarization: 39.49 SS G_CDS: 1.90 Total: 41.39 kcal Total: -84.17 -0.56 -84.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001109490082.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.472 kcal (2) G-P(sol) polarization free energy of solvation -84.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds