Wall clock time and date at job start Wed Apr 1 2020 05:25:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.35035 * 124.88624 * 2 1 4 4 C 1.35372 * 107.22757 * 179.72524 * 3 2 1 5 5 C 1.41504 * 105.50193 * 0.41379 * 4 3 2 6 6 C 1.47708 * 126.51556 * 179.84494 * 5 4 3 7 7 O 1.21572 * 120.00165 * 359.70886 * 6 5 4 8 8 N 1.34776 * 120.00005 * 179.71386 * 6 5 4 9 9 C 1.46502 * 120.00317 * 179.97438 * 8 6 5 10 10 H 1.09001 * 110.66510 * 37.01251 * 9 8 6 11 11 C 1.54826 * 110.61312 * 159.96504 * 9 8 6 12 12 C 1.55850 * 103.52300 * 118.50964 * 11 9 8 13 13 H 1.08988 * 116.15348 * 159.22272 * 12 11 9 14 14 C 1.55848 * 105.02828 * 288.27166 * 12 11 9 15 15 C 1.54840 * 103.51979 * 71.72651 * 14 12 11 16 16 C 1.55842 * 103.51915 * 359.97438 * 15 14 12 17 17 H 1.09005 * 115.58002 * 158.88801 * 16 15 14 18 18 N 1.50653 * 101.02983 * 32.99581 * 16 15 14 19 19 C 1.46906 * 110.99758 * 62.34472 * 18 16 15 20 20 C 1.50702 * 109.46837 * 170.00432 * 19 18 16 21 21 O 1.21297 * 120.00170 * 359.97438 * 20 19 18 22 22 N 1.34777 * 119.99964 * 180.02562 * 20 19 18 23 23 C 1.37095 * 119.99800 * 179.97438 * 22 20 19 24 24 H 1.07995 * 120.00658 * 0.27556 * 23 22 20 25 25 C 1.38955 * 119.99881 * 179.97438 * 23 22 20 26 26 N 1.31419 * 119.99790 * 0.02562 * 25 23 22 27 27 Si 1.86793 * 120.00240 * 180.02562 * 25 23 22 28 28 H 1.48500 * 109.47055 * 359.97438 * 27 25 23 29 29 H 1.48497 * 109.47262 * 120.00055 * 27 25 23 30 30 H 1.48497 * 109.47291 * 240.00150 * 27 25 23 31 31 N 1.28473 * 124.88455 * 180.02562 * 2 1 3 32 32 H 1.08999 * 109.46967 * 269.97884 * 1 2 3 33 33 H 1.09009 * 109.46747 * 29.97702 * 1 2 3 34 34 H 1.08999 * 109.47325 * 149.97274 * 1 2 3 35 35 H 1.07998 * 126.38936 * 359.97438 * 3 2 1 36 36 H 1.08001 * 127.24792 * 180.25443 * 4 3 2 37 37 H 0.97003 * 119.99808 * 359.97438 * 8 6 5 38 38 H 1.09003 * 110.61568 * 359.97438 * 11 9 8 39 39 H 1.09004 * 110.61311 * 237.01679 * 11 9 8 40 40 H 1.08996 * 110.61810 * 313.21354 * 14 12 11 41 41 H 1.08998 * 110.60908 * 190.22871 * 14 12 11 42 42 H 1.08999 * 110.61413 * 241.48686 * 15 14 12 43 43 H 1.09005 * 110.74779 * 118.57003 * 15 14 12 44 44 H 1.09000 * 109.46958 * 50.00966 * 19 18 16 45 45 H 1.08994 * 109.47334 * 290.00030 * 19 18 16 46 46 H 0.96999 * 119.99864 * 359.97438 * 22 20 19 47 47 H 0.96998 * 119.99489 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2373 1.1077 0.0000 4 6 3.5272 0.6970 0.0062 5 6 3.4740 -0.7170 0.0000 6 6 4.6272 -1.6399 0.0001 7 8 5.7597 -1.1978 0.0005 8 7 4.4240 -2.9723 -0.0005 9 6 5.5678 -3.8878 -0.0010 10 1 6.3771 -3.4926 0.6130 11 6 5.1427 -5.2915 0.4949 12 6 5.4353 -6.2137 -0.7268 13 1 5.5473 -7.2761 -0.5108 14 6 4.3423 -5.8520 -1.7772 15 6 4.7675 -4.4482 -2.2732 16 6 6.0602 -4.1490 -1.4558 17 1 6.7223 -3.3950 -1.8815 18 7 6.6411 -5.5323 -1.3188 19 6 6.9717 -6.0970 -2.6340 20 6 7.7682 -7.3632 -2.4511 21 8 8.0348 -7.7562 -1.3350 22 7 8.1853 -8.0584 -3.5278 23 6 8.9104 -9.2100 -3.3614 24 1 9.1435 -9.5625 -2.3676 25 6 9.3399 -9.9270 -4.4715 26 7 9.0516 -9.5009 -5.6808 27 14 10.3272 -11.4964 -4.2448 28 1 10.5169 -11.7569 -2.7952 29 1 9.5978 -12.6335 -4.8614 30 1 11.6525 -11.3462 -4.8977 31 7 2.1997 -1.0539 -0.0005 32 1 -0.3633 -0.0004 1.0277 33 1 -0.3633 0.8903 -0.5135 34 1 -0.3634 -0.8897 -0.5142 35 1 1.8906 2.1305 -0.0004 36 1 4.4109 1.3180 0.0118 37 1 3.5204 -3.3251 -0.0005 38 1 4.0810 -5.3061 0.7416 39 1 5.7413 -5.5922 1.3548 40 1 3.3587 -5.8120 -1.3094 41 1 4.3486 -6.5676 -2.5994 42 1 3.9946 -3.7124 -2.0512 43 1 4.9839 -4.4652 -3.3415 44 1 7.5604 -5.3762 -3.2014 45 1 6.0522 -6.3212 -3.1747 46 1 7.9725 -7.7439 -4.4204 47 1 9.3518 -10.0013 -6.4556 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001110101687.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:25:00 Heat of formation + Delta-G solvation = 51.595941 kcal Electronic energy + Delta-G solvation = -30389.109324 eV Core-core repulsion = 26188.959568 eV Total energy + Delta-G solvation = -4200.149756 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.88 seconds Orbital eigenvalues (eV) -42.96964 -41.11777 -39.03442 -37.72018 -34.59230 -33.86983 -33.75778 -31.44521 -31.11476 -30.74813 -30.07579 -29.03754 -27.76573 -26.27551 -24.21795 -23.43457 -21.96741 -21.82814 -20.59240 -20.00667 -19.39358 -18.89946 -18.15306 -17.74026 -16.87896 -16.66510 -16.21971 -16.05918 -15.86378 -15.08061 -14.74471 -14.51734 -14.36764 -14.20642 -13.89873 -13.73587 -13.58879 -13.25124 -13.13666 -12.98291 -12.85169 -12.39062 -12.19819 -11.87143 -11.71329 -11.60802 -11.36676 -11.28964 -11.16433 -10.98918 -10.88434 -10.68389 -10.29631 -10.22333 -10.15941 -10.08604 -9.63794 -9.43592 -9.42542 -9.04672 -8.47979 -7.98859 -7.88043 -6.34911 -3.75194 1.29546 1.81435 2.05348 3.01543 3.20861 3.27218 3.30793 3.38383 3.92387 3.99378 4.07218 4.27659 4.40233 4.49656 4.52332 4.60145 4.65820 4.80050 4.88133 4.94981 5.09994 5.21967 5.27499 5.31590 5.32315 5.36319 5.40806 5.44719 5.49386 5.71263 5.76761 5.89392 5.95116 6.02368 6.06241 6.07888 6.12671 6.23668 6.33902 6.35636 6.42587 6.45940 6.93675 7.26132 7.31090 7.60142 7.61869 8.11731 8.14284 8.70339 9.26027 9.63336 10.16046 10.83224 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.029546 B = 0.001955 C = 0.001942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.448837 B =14319.875222 C =14413.044257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.286 5.286 3 C -0.021 4.021 4 C -0.178 4.178 5 C -0.015 4.015 6 C 0.603 3.397 7 O -0.528 6.528 8 N -0.705 5.705 9 C 0.151 3.849 10 H 0.101 0.899 11 C -0.117 4.117 12 C 0.057 3.943 13 H 0.122 0.878 14 C -0.157 4.157 15 C -0.154 4.154 16 C 0.036 3.964 17 H 0.115 0.885 18 N -0.462 5.462 19 C 0.025 3.975 20 C 0.449 3.551 21 O -0.576 6.576 22 N -0.569 5.569 23 C -0.295 4.295 24 H 0.103 0.897 25 C 0.020 3.980 26 N -0.904 5.904 27 Si 0.928 3.072 28 H -0.268 1.268 29 H -0.283 1.283 30 H -0.282 1.282 31 N -0.263 5.263 32 H 0.085 0.915 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.182 0.818 36 H 0.163 0.837 37 H 0.404 0.596 38 H 0.072 0.928 39 H 0.085 0.915 40 H 0.068 0.932 41 H 0.070 0.930 42 H 0.071 0.929 43 H 0.066 0.934 44 H 0.085 0.915 45 H 0.061 0.939 46 H 0.391 0.609 47 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.452 20.987 8.805 31.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.074 5.074 3 C -0.163 4.163 4 C -0.206 4.206 5 C -0.176 4.176 6 C 0.387 3.613 7 O -0.401 6.401 8 N -0.357 5.357 9 C 0.046 3.954 10 H 0.119 0.881 11 C -0.155 4.155 12 C -0.052 4.052 13 H 0.140 0.860 14 C -0.196 4.196 15 C -0.193 4.193 16 C -0.074 4.074 17 H 0.133 0.867 18 N -0.184 5.184 19 C -0.107 4.107 20 C 0.234 3.766 21 O -0.459 6.459 22 N -0.206 5.206 23 C -0.425 4.425 24 H 0.121 0.879 25 C -0.181 4.181 26 N -0.546 5.546 27 Si 0.756 3.244 28 H -0.193 1.193 29 H -0.209 1.209 30 H -0.208 1.208 31 N -0.100 5.100 32 H 0.104 0.896 33 H 0.114 0.886 34 H 0.115 0.885 35 H 0.200 0.800 36 H 0.181 0.819 37 H 0.240 0.760 38 H 0.091 0.909 39 H 0.104 0.896 40 H 0.087 0.913 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.085 0.915 44 H 0.104 0.896 45 H 0.079 0.921 46 H 0.224 0.776 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -20.664 19.967 9.731 30.338 hybrid contribution -0.469 0.087 -1.335 1.418 sum -21.133 20.054 8.396 30.319 Atomic orbital electron populations 1.22190 0.73158 1.05555 1.04516 1.45403 1.07819 1.03152 1.51055 1.22881 0.91006 0.93757 1.08673 1.21824 0.97388 0.93593 1.07780 1.22016 0.90697 0.94341 1.10512 1.16892 0.86551 0.81542 0.76291 1.90822 1.22446 1.77057 1.49821 1.45993 1.10291 1.05234 1.74182 1.21893 0.88152 0.88885 0.96470 0.88076 1.22868 1.00938 0.93029 0.98667 1.24441 0.87903 0.99323 0.93520 0.86005 1.23342 0.99565 0.96689 1.00030 1.23260 0.98736 0.96985 1.00304 1.24821 0.94004 0.93352 0.95243 0.86675 1.67376 1.30875 1.00326 1.19846 1.22111 0.99769 0.97307 0.91500 1.19748 0.85115 0.86140 0.85616 1.90515 1.60513 1.70613 1.24274 1.41871 1.48544 1.22937 1.07282 1.19738 1.28521 0.99400 0.94794 0.87929 1.25249 0.98457 0.99784 0.94659 1.69628 1.46945 1.40319 0.97692 0.85812 0.79010 0.80976 0.78620 1.19254 1.20880 1.20817 1.73494 1.03014 1.14211 1.19279 0.89647 0.88560 0.88464 0.80046 0.81923 0.76005 0.90907 0.89643 0.91296 0.91116 0.91061 0.91510 0.89638 0.92144 0.77605 0.92058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.19 11.31 59.84 0.68 0.86 16 2 N -0.29 -1.97 3.70 -68.13 -0.25 -2.23 16 3 C -0.02 -0.13 11.46 -17.16 -0.20 -0.33 16 4 C -0.18 -1.67 10.81 -39.36 -0.43 -2.10 16 5 C -0.02 -0.17 7.13 -82.77 -0.59 -0.76 16 6 C 0.60 7.90 7.82 -12.39 -0.10 7.80 16 7 O -0.53 -8.59 16.66 5.30 0.09 -8.50 16 8 N -0.71 -7.98 3.63 -52.42 -0.19 -8.17 16 9 C 0.15 1.95 3.07 -65.48 -0.20 1.75 16 10 H 0.10 1.48 7.70 -51.93 -0.40 1.08 16 11 C -0.12 -1.43 6.19 -24.25 -0.15 -1.58 16 12 C 0.06 0.85 4.56 -62.57 -0.29 0.56 16 13 H 0.12 2.09 7.95 -51.94 -0.41 1.67 16 14 C -0.16 -1.98 5.63 -24.24 -0.14 -2.11 16 15 C -0.15 -1.91 5.52 -24.24 -0.13 -2.05 16 16 C 0.04 0.51 4.79 -62.59 -0.30 0.21 16 17 H 0.12 1.72 8.14 -51.93 -0.42 1.30 16 18 N -0.46 -7.98 5.09 -207.06 -1.05 -9.04 16 19 C 0.03 0.47 4.83 -4.97 -0.02 0.44 16 20 C 0.45 10.91 7.71 -10.98 -0.08 10.82 16 21 O -0.58 -15.98 15.58 5.54 0.09 -15.90 16 22 N -0.57 -14.79 5.29 -10.96 -0.06 -14.85 16 23 C -0.29 -8.39 9.68 -14.93 -0.14 -8.54 16 24 H 0.10 3.07 7.16 -52.49 -0.38 2.69 16 25 C 0.02 0.53 5.50 -17.46 -0.10 0.44 16 26 N -0.90 -25.10 13.05 55.50 0.72 -24.38 16 27 Si 0.93 21.50 29.55 -169.99 -5.02 16.47 16 28 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 29 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 30 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 31 N -0.26 -2.59 11.67 33.42 0.39 -2.20 16 32 H 0.08 0.09 8.14 -51.93 -0.42 -0.34 16 33 H 0.10 -0.03 8.13 -51.92 -0.42 -0.46 16 34 H 0.10 0.19 8.14 -51.93 -0.42 -0.23 16 35 H 0.18 0.44 8.06 -52.49 -0.42 0.01 16 36 H 0.16 1.40 8.06 -52.49 -0.42 0.98 16 37 H 0.40 3.91 7.74 -40.82 -0.32 3.60 16 38 H 0.07 0.71 7.34 -51.93 -0.38 0.33 16 39 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.07 0.72 7.82 -51.93 -0.41 0.32 16 41 H 0.07 0.96 6.95 -51.93 -0.36 0.60 16 42 H 0.07 0.82 6.48 -51.93 -0.34 0.48 16 43 H 0.07 0.85 7.64 -51.93 -0.40 0.45 16 44 H 0.09 1.51 8.09 -51.93 -0.42 1.09 16 45 H 0.06 1.03 5.10 -51.93 -0.26 0.76 16 46 H 0.39 9.76 7.90 -40.82 -0.32 9.44 16 47 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 384.54 15.07 5.79 5.79 Total: -1.00 -36.09 384.54 -8.17 -44.26 By element: Atomic # 1 Polarization: 19.78 SS G_CDS: -6.49 Total: 13.29 kcal Atomic # 6 Polarization: 7.63 SS G_CDS: -2.19 Total: 5.44 kcal Atomic # 7 Polarization: -60.43 SS G_CDS: -0.44 Total: -60.86 kcal Atomic # 8 Polarization: -24.57 SS G_CDS: 0.17 Total: -24.39 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -36.09 -8.17 -44.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110101687.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.855 kcal (2) G-P(sol) polarization free energy of solvation -36.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.88 seconds