Wall clock time and date at job start Wed Apr 1 2020 05:24:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.35035 * 124.88624 * 2 1 4 4 C 1.35372 * 107.22757 * 179.72524 * 3 2 1 5 5 C 1.41504 * 105.50193 * 0.41379 * 4 3 2 6 6 C 1.47708 * 126.51556 * 179.84494 * 5 4 3 7 7 O 1.21572 * 120.00165 * 359.70886 * 6 5 4 8 8 N 1.34776 * 120.00005 * 179.71386 * 6 5 4 9 9 C 1.46502 * 120.00317 * 179.97438 * 8 6 5 10 10 H 1.09001 * 110.66510 * 37.01251 * 9 8 6 11 11 C 1.54826 * 110.61312 * 159.96504 * 9 8 6 12 12 C 1.55850 * 103.52300 * 118.50964 * 11 9 8 13 13 H 1.08988 * 116.15348 * 159.22272 * 12 11 9 14 14 C 1.55848 * 105.02828 * 288.27166 * 12 11 9 15 15 C 1.54840 * 103.51979 * 71.72651 * 14 12 11 16 16 C 1.55842 * 103.51915 * 359.97438 * 15 14 12 17 17 H 1.09005 * 115.58002 * 158.88801 * 16 15 14 18 18 N 1.50653 * 101.02983 * 32.99581 * 16 15 14 19 19 C 1.46906 * 110.99758 * 62.34472 * 18 16 15 20 20 C 1.50702 * 109.46837 * 170.00432 * 19 18 16 21 21 O 1.21297 * 120.00170 * 359.97438 * 20 19 18 22 22 N 1.34777 * 119.99964 * 180.02562 * 20 19 18 23 23 C 1.37095 * 119.99800 * 179.97438 * 22 20 19 24 24 H 1.07995 * 120.00658 * 0.27556 * 23 22 20 25 25 C 1.38955 * 119.99881 * 179.97438 * 23 22 20 26 26 N 1.31419 * 119.99790 * 0.02562 * 25 23 22 27 27 Si 1.86793 * 120.00240 * 180.02562 * 25 23 22 28 28 H 1.48500 * 109.47055 * 359.97438 * 27 25 23 29 29 H 1.48497 * 109.47262 * 120.00055 * 27 25 23 30 30 H 1.48497 * 109.47291 * 240.00150 * 27 25 23 31 31 N 1.28473 * 124.88455 * 180.02562 * 2 1 3 32 32 H 1.08999 * 109.46967 * 269.97884 * 1 2 3 33 33 H 1.09009 * 109.46747 * 29.97702 * 1 2 3 34 34 H 1.08999 * 109.47325 * 149.97274 * 1 2 3 35 35 H 1.07998 * 126.38936 * 359.97438 * 3 2 1 36 36 H 1.08001 * 127.24792 * 180.25443 * 4 3 2 37 37 H 0.97003 * 119.99808 * 359.97438 * 8 6 5 38 38 H 1.09003 * 110.61568 * 359.97438 * 11 9 8 39 39 H 1.09004 * 110.61311 * 237.01679 * 11 9 8 40 40 H 1.08996 * 110.61810 * 313.21354 * 14 12 11 41 41 H 1.08998 * 110.60908 * 190.22871 * 14 12 11 42 42 H 1.08999 * 110.61413 * 241.48686 * 15 14 12 43 43 H 1.09005 * 110.74779 * 118.57003 * 15 14 12 44 44 H 1.09000 * 109.46958 * 50.00966 * 19 18 16 45 45 H 1.08994 * 109.47334 * 290.00030 * 19 18 16 46 46 H 0.96999 * 119.99864 * 359.97438 * 22 20 19 47 47 H 0.96998 * 119.99489 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2373 1.1077 0.0000 4 6 3.5272 0.6970 0.0062 5 6 3.4740 -0.7170 0.0000 6 6 4.6272 -1.6399 0.0001 7 8 5.7597 -1.1978 0.0005 8 7 4.4240 -2.9723 -0.0005 9 6 5.5678 -3.8878 -0.0010 10 1 6.3771 -3.4926 0.6130 11 6 5.1427 -5.2915 0.4949 12 6 5.4353 -6.2137 -0.7268 13 1 5.5473 -7.2761 -0.5108 14 6 4.3423 -5.8520 -1.7772 15 6 4.7675 -4.4482 -2.2732 16 6 6.0602 -4.1490 -1.4558 17 1 6.7223 -3.3950 -1.8815 18 7 6.6411 -5.5323 -1.3188 19 6 6.9717 -6.0970 -2.6340 20 6 7.7682 -7.3632 -2.4511 21 8 8.0348 -7.7562 -1.3350 22 7 8.1853 -8.0584 -3.5278 23 6 8.9104 -9.2100 -3.3614 24 1 9.1435 -9.5625 -2.3676 25 6 9.3399 -9.9270 -4.4715 26 7 9.0516 -9.5009 -5.6808 27 14 10.3272 -11.4964 -4.2448 28 1 10.5169 -11.7569 -2.7952 29 1 9.5978 -12.6335 -4.8614 30 1 11.6525 -11.3462 -4.8977 31 7 2.1997 -1.0539 -0.0005 32 1 -0.3633 -0.0004 1.0277 33 1 -0.3633 0.8903 -0.5135 34 1 -0.3634 -0.8897 -0.5142 35 1 1.8906 2.1305 -0.0004 36 1 4.4109 1.3180 0.0118 37 1 3.5204 -3.3251 -0.0005 38 1 4.0810 -5.3061 0.7416 39 1 5.7413 -5.5922 1.3548 40 1 3.3587 -5.8120 -1.3094 41 1 4.3486 -6.5676 -2.5994 42 1 3.9946 -3.7124 -2.0512 43 1 4.9839 -4.4652 -3.3415 44 1 7.5604 -5.3762 -3.2014 45 1 6.0522 -6.3212 -3.1747 46 1 7.9725 -7.7439 -4.4204 47 1 9.3518 -10.0013 -6.4556 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001110101687.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:24:58 Heat of formation + Delta-G solvation = 23.541441 kcal Electronic energy + Delta-G solvation = -30390.325858 eV Core-core repulsion = 26188.959568 eV Total energy + Delta-G solvation = -4201.366290 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -43.56379 -42.28641 -40.22389 -39.55442 -36.01331 -35.58294 -34.34618 -33.29609 -32.37734 -31.65107 -31.13622 -30.10297 -28.51735 -27.72413 -25.96954 -24.29655 -22.98346 -22.39715 -21.84781 -21.10724 -20.58267 -20.47487 -19.80449 -18.82638 -17.83335 -17.63760 -17.30729 -17.19919 -16.87748 -16.67955 -16.24171 -15.87620 -15.76900 -15.34238 -15.18020 -14.74368 -14.50919 -14.46827 -13.96836 -13.91547 -13.51328 -13.50346 -13.45014 -13.32058 -13.17132 -12.97046 -12.76600 -12.64397 -12.40095 -12.35884 -12.11206 -12.02669 -11.94265 -11.83653 -11.48861 -11.27678 -11.16121 -10.40457 -10.26460 -10.09759 -9.99621 -9.90897 -9.46316 -8.45728 -5.94239 0.53686 1.22570 1.36496 1.41050 1.55699 1.61917 2.06983 2.08862 2.30059 2.37012 2.81499 3.20320 3.31303 3.38196 3.48803 3.60539 3.87453 3.97680 4.03224 4.09323 4.20812 4.24799 4.27424 4.30361 4.36224 4.44941 4.49612 4.50490 4.55384 4.67756 4.74540 4.78468 4.80636 4.86210 4.95407 5.00501 5.07796 5.15043 5.22791 5.35189 5.41448 5.42505 5.74027 5.84876 5.91479 6.07812 6.44158 6.61974 6.91948 7.14270 7.17936 7.57867 8.14307 8.72159 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.029546 B = 0.001955 C = 0.001942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.448837 B =14319.875222 C =14413.044257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.279 5.279 3 C 0.001 3.999 4 C -0.208 4.208 5 C -0.047 4.047 6 C 0.602 3.398 7 O -0.570 6.570 8 N -0.690 5.690 9 C 0.159 3.841 10 H 0.079 0.921 11 C -0.104 4.104 12 C 0.047 3.953 13 H 0.095 0.905 14 C -0.147 4.147 15 C -0.143 4.143 16 C 0.035 3.965 17 H 0.105 0.895 18 N -0.492 5.492 19 C 0.041 3.959 20 C 0.446 3.554 21 O -0.615 6.615 22 N -0.577 5.577 23 C -0.330 4.330 24 H 0.078 0.922 25 C -0.016 4.016 26 N -0.922 5.922 27 Si 0.994 3.006 28 H -0.274 1.274 29 H -0.269 1.269 30 H -0.272 1.272 31 N -0.273 5.273 32 H 0.101 0.899 33 H 0.128 0.872 34 H 0.099 0.901 35 H 0.226 0.774 36 H 0.159 0.841 37 H 0.415 0.585 38 H 0.106 0.894 39 H 0.077 0.923 40 H 0.099 0.901 41 H 0.061 0.939 42 H 0.087 0.913 43 H 0.067 0.933 44 H 0.095 0.905 45 H 0.081 0.919 46 H 0.395 0.605 47 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.479 22.226 8.507 34.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.068 5.068 3 C -0.142 4.142 4 C -0.236 4.236 5 C -0.206 4.206 6 C 0.388 3.612 7 O -0.447 6.447 8 N -0.342 5.342 9 C 0.054 3.946 10 H 0.098 0.902 11 C -0.142 4.142 12 C -0.062 4.062 13 H 0.113 0.887 14 C -0.185 4.185 15 C -0.182 4.182 16 C -0.075 4.075 17 H 0.123 0.877 18 N -0.215 5.215 19 C -0.091 4.091 20 C 0.233 3.767 21 O -0.501 6.501 22 N -0.215 5.215 23 C -0.460 4.460 24 H 0.096 0.904 25 C -0.215 4.215 26 N -0.563 5.563 27 Si 0.818 3.182 28 H -0.198 1.198 29 H -0.195 1.195 30 H -0.197 1.197 31 N -0.112 5.112 32 H 0.119 0.881 33 H 0.146 0.854 34 H 0.118 0.882 35 H 0.243 0.757 36 H 0.177 0.823 37 H 0.253 0.747 38 H 0.124 0.876 39 H 0.096 0.904 40 H 0.118 0.882 41 H 0.080 0.920 42 H 0.105 0.895 43 H 0.086 0.914 44 H 0.114 0.886 45 H 0.099 0.901 46 H 0.228 0.772 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -23.746 21.206 9.416 33.200 hybrid contribution 0.377 -0.213 -1.201 1.277 sum -23.369 20.993 8.215 32.470 Atomic orbital electron populations 1.22641 0.70291 1.07336 1.06104 1.45921 1.09377 1.02644 1.48865 1.23457 0.89719 0.95307 1.05749 1.22025 0.99007 0.93028 1.09546 1.21813 0.90789 0.94765 1.13193 1.17219 0.86682 0.82012 0.75312 1.90791 1.24273 1.77784 1.51884 1.45802 1.10242 1.04598 1.73563 1.21634 0.88284 0.89436 0.95282 0.90242 1.22803 1.02826 0.91443 0.97144 1.24410 0.88026 0.98252 0.95468 0.88732 1.23276 1.00090 0.96166 0.99011 1.23187 0.97865 0.97212 0.99915 1.24787 0.94661 0.91429 0.96584 0.87748 1.67328 1.33097 1.02057 1.19061 1.21916 0.99735 0.94526 0.92935 1.20727 0.84284 0.87153 0.84548 1.90479 1.61866 1.71978 1.25729 1.41935 1.48820 1.22823 1.07879 1.19688 1.30767 1.01222 0.94277 0.90394 1.26055 0.98826 1.02513 0.94107 1.69690 1.47061 1.41374 0.98210 0.84856 0.77885 0.77263 0.78233 1.19842 1.19454 1.19695 1.73425 1.02478 1.15559 1.19709 0.88106 0.85366 0.88238 0.75716 0.82320 0.74655 0.87592 0.90383 0.88240 0.92022 0.89492 0.91447 0.88643 0.90117 0.77178 0.91373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.03 11.31 127.77 1.44 1.48 16 2 N -0.28 -2.99 3.70 -369.45 -1.37 -4.36 16 3 C 0.00 0.01 11.46 83.54 0.96 0.96 16 4 C -0.21 -3.73 10.81 22.41 0.24 -3.49 16 5 C -0.05 -1.04 7.13 42.46 0.30 -0.74 16 6 C 0.60 15.90 7.82 86.75 0.68 16.58 16 7 O -0.57 -19.38 16.66 -3.94 -0.07 -19.44 16 8 N -0.69 -15.09 3.63 -438.03 -1.59 -16.68 16 9 C 0.16 4.13 3.07 46.58 0.14 4.27 16 10 H 0.08 2.44 7.70 -2.39 -0.02 2.42 16 11 C -0.10 -2.47 6.19 32.20 0.20 -2.27 16 12 C 0.05 1.40 4.56 46.15 0.21 1.61 16 13 H 0.09 3.36 7.95 -2.39 -0.02 3.34 16 14 C -0.15 -3.43 5.63 32.21 0.18 -3.25 16 15 C -0.14 -3.32 5.52 32.21 0.18 -3.14 16 16 C 0.03 1.00 4.79 46.12 0.22 1.22 16 17 H 0.10 3.22 8.14 -2.38 -0.02 3.20 16 18 N -0.49 -17.35 5.09 -809.02 -4.12 -21.47 16 19 C 0.04 1.54 4.83 85.56 0.41 1.96 16 20 C 0.45 22.44 7.71 87.66 0.68 23.12 16 21 O -0.61 -35.68 15.58 -3.08 -0.05 -35.73 16 22 N -0.58 -30.94 5.29 -306.98 -1.62 -32.56 16 23 C -0.33 -19.37 9.68 84.04 0.81 -18.56 16 24 H 0.08 4.88 7.16 -2.91 -0.02 4.86 16 25 C -0.02 -0.87 5.50 84.93 0.47 -0.40 16 26 N -0.92 -51.10 13.05 21.67 0.28 -50.82 16 27 Si 0.99 44.19 29.55 68.60 2.03 46.21 16 28 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 29 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 30 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 31 N -0.27 -4.83 11.67 -48.18 -0.56 -5.40 16 32 H 0.10 -0.20 8.14 -2.39 -0.02 -0.22 16 33 H 0.13 -0.73 8.13 -2.38 -0.02 -0.75 16 34 H 0.10 0.05 8.14 -2.39 -0.02 0.03 16 35 H 0.23 0.00 8.06 -2.91 -0.02 -0.02 16 36 H 0.16 2.80 8.06 -2.91 -0.02 2.77 16 37 H 0.42 7.21 7.74 -92.71 -0.72 6.49 16 38 H 0.11 1.80 7.34 -2.39 -0.02 1.78 16 39 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 40 H 0.10 1.74 7.82 -2.39 -0.02 1.72 16 41 H 0.06 1.58 6.95 -2.39 -0.02 1.56 16 42 H 0.09 1.78 6.48 -2.39 -0.02 1.76 16 43 H 0.07 1.59 7.64 -2.38 -0.02 1.57 16 44 H 0.10 3.40 8.09 -2.39 -0.02 3.38 16 45 H 0.08 2.72 5.10 -2.39 -0.01 2.71 16 46 H 0.39 20.18 7.90 -92.71 -0.73 19.44 16 47 H 0.28 14.30 8.31 -92.71 -0.77 13.53 16 Total: -1.00 -82.13 384.54 -0.35 -82.49 By element: Atomic # 1 Polarization: 38.81 SS G_CDS: -0.42 Total: 38.39 kcal Atomic # 6 Polarization: 12.23 SS G_CDS: 7.13 Total: 19.36 kcal Atomic # 7 Polarization: -122.31 SS G_CDS: -8.97 Total: -131.28 kcal Atomic # 8 Polarization: -55.06 SS G_CDS: -0.11 Total: -55.17 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.21 kcal Total: -82.13 -0.35 -82.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110101687.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.028 kcal (2) G-P(sol) polarization free energy of solvation -82.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds