Wall clock time and date at job start Wed Apr 1 2020 05:25:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34257 * 125.74885 * 2 1 4 4 C 1.38042 * 107.41523 * 180.14466 * 3 2 1 5 5 C 1.47429 * 126.41905 * 179.87350 * 4 3 2 6 6 O 1.21605 * 119.99733 * 359.70790 * 5 4 3 7 7 N 1.34778 * 120.00448 * 179.71093 * 5 4 3 8 8 C 1.46501 * 119.99975 * 179.97438 * 7 5 4 9 9 H 1.08995 * 110.54745 * 40.62186 * 8 7 5 10 10 C 1.54831 * 110.61224 * 277.58480 * 8 7 5 11 11 C 1.55851 * 103.51775 * 241.49310 * 10 8 7 12 12 H 1.09009 * 115.58188 * 158.89304 * 11 10 8 13 13 C 1.55843 * 105.03413 * 288.27295 * 11 10 8 14 14 C 1.54837 * 103.51745 * 71.72920 * 13 11 10 15 15 C 1.55844 * 103.51942 * 0.02562 * 14 13 11 16 16 H 1.09004 * 116.15027 * 159.22738 * 15 14 13 17 17 N 1.50648 * 101.02817 * 32.99795 * 11 10 8 18 18 C 1.46901 * 111.00099 * 62.34400 * 17 11 10 19 19 C 1.50709 * 109.46668 * 69.04936 * 18 17 11 20 20 O 1.21294 * 120.00179 * 0.02562 * 19 18 17 21 21 N 1.34776 * 119.99433 * 179.97438 * 19 18 17 22 22 C 1.37106 * 119.99681 * 179.97438 * 21 19 18 23 23 H 1.08002 * 119.99699 * 0.02562 * 22 21 19 24 24 C 1.38949 * 120.00040 * 180.02562 * 22 21 19 25 25 N 1.31408 * 119.99769 * 0.02562 * 24 22 21 26 26 Si 1.86793 * 119.99957 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.47312 * 0.02562 * 26 24 22 28 28 H 1.48509 * 109.47092 * 120.00138 * 26 24 22 29 29 H 1.48500 * 109.47151 * 240.00073 * 26 24 22 30 30 C 1.41291 * 107.16810 * 359.60645 * 4 3 2 31 31 N 1.30445 * 108.02348 * 0.24241 * 30 4 3 32 32 H 1.09002 * 109.47300 * 270.26987 * 1 2 3 33 33 H 1.09000 * 109.47641 * 30.27186 * 1 2 3 34 34 H 1.09000 * 109.46950 * 150.26976 * 1 2 3 35 35 H 1.07998 * 126.30065 * 359.97438 * 3 2 1 36 36 H 0.97005 * 119.99500 * 0.02562 * 7 5 4 37 37 H 1.08998 * 110.61439 * 0.02562 * 10 8 7 38 38 H 1.09002 * 110.61197 * 122.99165 * 10 8 7 39 39 H 1.09001 * 110.61340 * 190.23675 * 13 11 10 40 40 H 1.09005 * 110.61350 * 313.06626 * 13 11 10 41 41 H 1.08997 * 110.61165 * 241.48735 * 14 13 11 42 42 H 1.09000 * 110.61220 * 118.50948 * 14 13 11 43 43 H 1.09000 * 109.46828 * 189.04230 * 18 17 11 44 44 H 1.08992 * 109.47218 * 309.04773 * 18 17 11 45 45 H 0.96998 * 120.00678 * 0.02562 * 21 19 18 46 46 H 0.97004 * 120.00298 * 179.97438 * 25 24 22 47 47 H 1.08007 * 125.98692 * 180.27998 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2494 1.0896 0.0000 4 6 3.5597 0.6554 -0.0033 5 6 4.7637 1.5062 -0.0072 6 8 4.6524 2.7172 -0.0130 7 7 5.9877 0.9420 -0.0043 8 6 7.1841 1.7876 -0.0087 9 1 7.0494 2.6444 0.6514 10 6 7.5188 2.2510 -1.4476 11 6 8.9315 1.6458 -1.7059 12 1 9.2128 1.5373 -2.7535 13 6 9.8993 2.4852 -0.8184 14 6 9.5646 2.0217 0.6205 15 6 8.4398 0.9637 0.4101 16 1 8.2880 0.2555 1.2247 17 7 8.8473 0.3683 -0.9119 18 6 7.7959 -0.5113 -1.4398 19 6 8.2089 -1.0321 -2.7924 20 8 9.2745 -0.7032 -3.2694 21 7 7.3945 -1.8641 -3.4715 22 6 7.7700 -2.3374 -4.7022 23 1 8.7185 -2.0439 -5.1273 24 6 6.9303 -3.1947 -5.4026 25 7 5.7760 -3.5514 -4.8856 26 14 7.4421 -3.8402 -7.0791 27 1 8.7766 -3.2936 -7.4337 28 1 7.5099 -5.3232 -7.0390 29 1 6.4471 -3.4175 -8.0972 30 6 3.5310 -0.7572 0.0039 31 7 2.2826 -1.1355 0.0058 32 1 -0.3634 0.0048 1.0277 33 1 -0.3634 0.8875 -0.5180 34 1 -0.3633 -0.8924 -0.5096 35 1 1.9165 2.1170 -0.0004 36 1 6.0764 -0.0240 -0.0001 37 1 6.7943 1.8520 -2.1575 38 1 7.5516 3.3391 -1.5024 39 1 10.9373 2.2592 -1.0627 40 1 9.7017 3.5506 -0.9367 41 1 9.1993 2.8572 1.2176 42 1 10.4366 1.5660 1.0895 43 1 7.6466 -1.3487 -0.7582 44 1 6.8664 0.0500 -1.5349 45 1 6.5425 -2.1274 -3.0899 46 1 5.1896 -4.1496 -5.3746 47 1 4.3919 -1.4095 0.0079 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001110271364.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:25:08 Heat of formation + Delta-G solvation = 23.873615 kcal Electronic energy + Delta-G solvation = -31490.735800 eV Core-core repulsion = 27289.383914 eV Total energy + Delta-G solvation = -4201.351886 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.59049 -42.13055 -39.93620 -39.49486 -35.95608 -35.38768 -34.28236 -33.42361 -32.91553 -31.52199 -30.66001 -29.76998 -28.17051 -27.67165 -25.92824 -24.30655 -22.67868 -21.98828 -21.70744 -21.58078 -20.69400 -20.41479 -19.72091 -18.93865 -17.70473 -17.54905 -17.12650 -16.85157 -16.57165 -16.42549 -16.17399 -15.81346 -15.64284 -15.46258 -15.36139 -14.99911 -14.52175 -14.32483 -13.89105 -13.67432 -13.56018 -13.54214 -13.45123 -13.22551 -13.06521 -12.98597 -12.82681 -12.53766 -12.39249 -12.27209 -12.17259 -12.12218 -11.99944 -11.66879 -11.46948 -11.26219 -10.83496 -10.60218 -10.29332 -10.16111 -9.98848 -9.66359 -9.42908 -8.45809 -5.93826 0.52694 1.13391 1.35210 1.40198 1.44981 1.54120 2.07461 2.22971 2.28214 2.44679 2.74403 3.20815 3.28600 3.48321 3.66210 3.72519 3.78175 3.81277 4.06548 4.13336 4.14583 4.20492 4.24883 4.34007 4.42015 4.45067 4.51160 4.53834 4.56546 4.57101 4.68926 4.69537 4.76448 4.81984 4.98573 5.10948 5.23851 5.29813 5.35386 5.36466 5.41488 5.52752 5.75775 5.87500 5.87804 6.09304 6.44208 6.56805 6.61955 7.14539 7.24257 7.58250 8.14526 8.71493 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.006846 B = 0.004511 C = 0.002879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4088.913422 B = 6205.058408 C = 9723.768547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.362 5.362 3 C 0.134 3.866 4 C -0.321 4.321 5 C 0.597 3.403 6 O -0.583 6.583 7 N -0.715 5.715 8 C 0.124 3.876 9 H 0.103 0.897 10 C -0.157 4.157 11 C 0.046 3.954 12 H 0.083 0.917 13 C -0.110 4.110 14 C -0.100 4.100 15 C 0.044 3.956 16 H 0.143 0.857 17 N -0.484 5.484 18 C 0.018 3.982 19 C 0.444 3.556 20 O -0.617 6.617 21 N -0.574 5.574 22 C -0.330 4.330 23 H 0.076 0.924 24 C -0.011 4.011 25 N -0.919 5.919 26 Si 0.989 3.011 27 H -0.274 1.274 28 H -0.270 1.270 29 H -0.273 1.273 30 C 0.081 3.919 31 N -0.326 5.326 32 H 0.098 0.902 33 H 0.119 0.881 34 H 0.093 0.907 35 H 0.212 0.788 36 H 0.408 0.592 37 H 0.042 0.958 38 H 0.085 0.915 39 H 0.064 0.936 40 H 0.085 0.915 41 H 0.096 0.904 42 H 0.085 0.915 43 H 0.112 0.888 44 H 0.084 0.916 45 H 0.395 0.605 46 H 0.276 0.724 47 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.749 10.249 16.139 21.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.140 5.140 3 C -0.019 4.019 4 C -0.336 4.336 5 C 0.387 3.613 6 O -0.464 6.464 7 N -0.368 5.368 8 C 0.018 3.982 9 H 0.121 0.879 10 C -0.197 4.197 11 C -0.062 4.062 12 H 0.101 0.899 13 C -0.148 4.148 14 C -0.138 4.138 15 C -0.065 4.065 16 H 0.161 0.839 17 N -0.207 5.207 18 C -0.114 4.114 19 C 0.231 3.769 20 O -0.503 6.503 21 N -0.211 5.211 22 C -0.460 4.460 23 H 0.094 0.906 24 C -0.211 4.211 25 N -0.560 5.560 26 Si 0.813 3.187 27 H -0.199 1.199 28 H -0.195 1.195 29 H -0.198 1.198 30 C -0.106 4.106 31 N -0.146 5.146 32 H 0.117 0.883 33 H 0.137 0.863 34 H 0.112 0.888 35 H 0.229 0.771 36 H 0.246 0.754 37 H 0.060 0.940 38 H 0.104 0.896 39 H 0.082 0.918 40 H 0.103 0.897 41 H 0.114 0.886 42 H 0.104 0.896 43 H 0.130 0.870 44 H 0.101 0.899 45 H 0.228 0.772 46 H 0.085 0.915 47 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -8.718 9.766 15.759 20.487 hybrid contribution -0.540 -0.128 -1.305 1.418 sum -9.258 9.638 14.454 19.686 Atomic orbital electron populations 1.22405 0.70954 1.06496 1.05508 1.48816 1.08690 1.03119 1.53328 1.23356 0.89714 0.94765 0.94102 1.20296 0.93806 0.93668 1.25818 1.17450 0.82883 0.86595 0.74366 1.90721 1.87403 1.15386 1.52911 1.46186 1.04933 1.10713 1.74929 1.22810 0.84461 0.94822 0.96112 0.87871 1.23686 0.97391 1.01938 0.96661 1.24392 0.94904 0.88892 0.98027 0.89860 1.22594 0.98657 0.98854 0.94714 1.22524 0.97626 0.97428 0.96203 1.25026 0.92433 0.95848 0.93178 0.83921 1.67506 1.38309 1.12085 1.02804 1.22405 0.95964 0.99010 0.94001 1.20746 0.85332 0.82356 0.88462 1.90479 1.25570 1.62575 1.71692 1.41901 1.19493 1.42286 1.17450 1.19653 1.04580 1.26434 0.95314 0.90553 1.25966 0.95185 0.96880 1.03074 1.69676 1.10344 1.35672 1.40296 0.84932 0.78158 0.78197 0.77438 1.19873 1.19510 1.19811 1.24379 0.95885 0.94020 0.96324 1.77181 1.02563 1.09171 1.25673 0.88331 0.86304 0.88787 0.77144 0.75406 0.93964 0.89626 0.91753 0.89690 0.88587 0.89645 0.86974 0.89886 0.77163 0.91461 0.77962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.82 11.44 127.77 1.46 2.28 16 2 N -0.36 -7.13 3.98 -367.78 -1.46 -8.59 16 3 C 0.13 2.73 11.30 84.28 0.95 3.68 16 4 C -0.32 -7.93 6.13 -20.15 -0.12 -8.05 16 5 C 0.60 16.34 7.78 86.66 0.67 17.02 16 6 O -0.58 -19.07 16.69 -4.05 -0.07 -19.14 16 7 N -0.71 -16.95 3.75 -438.08 -1.64 -18.59 16 8 C 0.12 2.91 2.48 46.62 0.12 3.02 16 9 H 0.10 2.33 7.49 -2.39 -0.02 2.31 16 10 C -0.16 -4.53 5.46 32.21 0.18 -4.35 16 11 C 0.05 1.49 4.26 46.15 0.20 1.68 16 12 H 0.08 3.41 6.86 -2.38 -0.02 3.39 16 13 C -0.11 -2.59 6.43 32.20 0.21 -2.38 16 14 C -0.10 -1.83 6.43 32.20 0.21 -1.62 16 15 C 0.04 0.93 4.63 46.18 0.21 1.15 16 16 H 0.14 2.38 8.14 -2.39 -0.02 2.36 16 17 N -0.48 -15.18 5.31 -808.79 -4.29 -19.48 16 18 C 0.02 0.62 4.05 85.56 0.35 0.96 16 19 C 0.44 21.32 7.57 87.66 0.66 21.99 16 20 O -0.62 -34.56 14.37 -3.07 -0.04 -34.60 16 21 N -0.57 -29.68 5.29 -306.97 -1.62 -31.30 16 22 C -0.33 -19.00 9.68 84.04 0.81 -18.19 16 23 H 0.08 4.72 7.16 -2.91 -0.02 4.70 16 24 C -0.01 -0.61 5.50 84.93 0.47 -0.15 16 25 N -0.92 -50.08 13.05 21.66 0.28 -49.80 16 26 Si 0.99 43.72 29.55 68.60 2.03 45.74 16 27 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 28 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 29 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 30 C 0.08 1.97 11.50 85.65 0.99 2.96 16 31 N -0.33 -8.42 12.50 -56.27 -0.70 -9.12 16 32 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.12 0.48 8.14 -2.39 -0.02 0.46 16 34 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.21 3.05 8.06 -2.91 -0.02 3.03 16 36 H 0.41 8.55 5.42 -92.70 -0.50 8.04 16 37 H 0.04 1.47 7.07 -2.39 -0.02 1.45 16 38 H 0.09 2.28 7.82 -2.39 -0.02 2.26 16 39 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.08 1.67 7.82 -2.38 -0.02 1.65 16 41 H 0.10 1.31 7.82 -2.39 -0.02 1.29 16 42 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 43 H 0.11 3.20 8.03 -2.39 -0.02 3.18 16 44 H 0.08 2.68 3.54 -2.39 -0.01 2.67 16 45 H 0.39 19.36 7.90 -92.71 -0.73 18.63 16 46 H 0.28 14.12 8.31 -92.71 -0.77 13.35 16 47 H 0.20 3.95 7.50 -2.91 -0.02 3.93 16 Total: -1.00 -80.42 380.09 -0.37 -80.79 By element: Atomic # 1 Polarization: 44.29 SS G_CDS: -0.20 Total: 44.09 kcal Atomic # 6 Polarization: 12.63 SS G_CDS: 7.36 Total: 19.99 kcal Atomic # 7 Polarization: -127.43 SS G_CDS: -9.44 Total: -136.88 kcal Atomic # 8 Polarization: -53.62 SS G_CDS: -0.11 Total: -53.74 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.74 kcal Total: -80.42 -0.37 -80.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110271364.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.663 kcal (2) G-P(sol) polarization free energy of solvation -80.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds