Wall clock time and date at job start Wed Apr 1 2020 05:25:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.28444 * 125.19342 * 2 1 4 4 C 1.30858 * 110.93068 * 179.97438 * 3 2 1 5 5 C 1.39675 * 107.85977 * 359.75911 * 4 3 2 6 6 C 1.36602 * 125.19155 * 179.97438 * 2 1 3 7 7 C 1.47161 * 126.87996 * 0.02562 * 6 2 1 8 8 O 1.21634 * 120.00117 * 173.69039 * 7 6 2 9 9 N 1.34773 * 120.00476 * 353.96170 * 7 6 2 10 10 C 1.46501 * 120.00488 * 184.77457 * 9 7 6 11 11 H 1.09004 * 110.54171 * 46.31199 * 10 9 7 12 12 C 1.54834 * 110.61531 * 283.44600 * 10 9 7 13 13 C 1.55843 * 103.51868 * 241.48859 * 12 10 9 14 14 H 1.09001 * 115.58224 * 158.89094 * 13 12 10 15 15 C 1.55852 * 105.03388 * 288.27164 * 13 12 10 16 16 C 1.54838 * 103.51715 * 71.73163 * 15 13 12 17 17 C 1.55843 * 103.51897 * 359.97438 * 16 15 13 18 18 H 1.09008 * 116.14973 * 159.23254 * 17 16 15 19 19 N 1.50642 * 101.02822 * 32.99608 * 17 16 15 20 20 C 1.46903 * 111.00068 * 189.76081 * 19 17 16 21 21 C 1.50704 * 109.47205 * 176.02059 * 20 19 17 22 22 O 1.21291 * 119.99678 * 6.47651 * 21 20 19 23 23 N 1.34780 * 119.99781 * 186.47960 * 21 20 19 24 24 C 1.37100 * 119.99503 * 185.05851 * 23 21 20 25 25 H 1.07994 * 120.00264 * 5.28639 * 24 23 21 26 26 C 1.38952 * 119.99611 * 185.29770 * 24 23 21 27 27 N 1.31413 * 119.99984 * 5.20362 * 26 24 23 28 28 Si 1.86799 * 119.99965 * 185.20711 * 26 24 23 29 29 H 1.48499 * 109.47491 * 64.99346 * 28 26 24 30 30 H 1.48500 * 109.47144 * 184.99827 * 28 26 24 31 31 H 1.48504 * 109.47172 * 304.99590 * 28 26 24 32 32 H 1.08998 * 109.47571 * 262.10002 * 1 2 3 33 33 H 1.08995 * 109.47031 * 22.09974 * 1 2 3 34 34 H 1.08997 * 109.46906 * 142.10088 * 1 2 3 35 35 H 1.08001 * 126.07379 * 180.02562 * 4 3 2 36 36 H 1.08002 * 127.31960 * 180.26647 * 5 4 3 37 37 H 0.97004 * 119.99788 * 4.78603 * 9 7 6 38 38 H 1.08992 * 110.61226 * 359.97438 * 12 10 9 39 39 H 1.09003 * 110.61039 * 122.98343 * 12 10 9 40 40 H 1.08999 * 110.61149 * 190.23764 * 15 13 12 41 41 H 1.08992 * 110.61521 * 313.22275 * 15 13 12 42 42 H 1.09007 * 110.61167 * 241.49130 * 16 15 13 43 43 H 1.08996 * 110.61530 * 118.50705 * 16 15 13 44 44 H 1.09003 * 109.47212 * 296.01698 * 20 19 17 45 45 H 1.09000 * 109.47675 * 56.01876 * 20 19 17 46 46 H 0.96997 * 120.00066 * 5.05033 * 23 21 20 47 47 H 0.97005 * 119.99630 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2053 1.0497 0.0000 4 6 3.4735 0.7273 0.0005 5 6 3.5611 -0.6667 0.0065 6 6 2.2522 -1.1164 0.0005 7 6 1.7992 -2.5165 0.0006 8 8 2.6082 -3.4175 -0.1147 9 7 0.4875 -2.8004 0.1229 10 6 0.0461 -4.1934 0.2283 11 1 0.6613 -4.7363 0.9459 12 6 0.0862 -4.8842 -1.1568 13 6 -1.3999 -5.2794 -1.4100 14 1 -1.6703 -5.4515 -2.4518 15 6 -1.6793 -6.4543 -0.4248 16 6 -1.7194 -5.7634 0.9603 17 6 -1.4583 -4.2636 0.6270 18 1 -1.7803 -3.5416 1.3776 19 7 -2.1190 -4.1489 -0.7219 20 6 -1.8034 -2.8614 -1.3549 21 6 -2.3989 -2.8226 -2.7388 22 8 -3.1219 -3.7216 -3.1132 23 7 -2.1279 -1.7890 -3.5603 24 6 -2.7502 -1.7005 -4.7787 25 1 -3.5194 -2.4102 -5.0450 26 6 -2.3910 -0.6977 -5.6710 27 7 -1.3866 0.1020 -5.3910 28 14 -3.3361 -0.4864 -7.2683 29 1 -4.7338 -0.0851 -6.9673 30 1 -2.6862 0.5639 -8.0928 31 1 -3.3397 -1.7700 -8.0150 32 1 -0.3634 -0.1412 1.0179 33 1 -0.3633 0.9521 -0.3866 34 1 -0.3633 -0.8109 -0.6313 35 1 4.3049 1.4166 0.0011 36 1 4.4594 -1.2663 0.0125 37 1 -0.1645 -2.0824 0.1411 38 1 0.4339 -4.1901 -1.9218 39 1 0.7190 -5.7711 -1.1251 40 1 -2.6379 -6.9225 -0.6480 41 1 -0.8742 -7.1880 -0.4645 42 1 -0.9341 -6.1547 1.6072 43 1 -2.6979 -5.8892 1.4237 44 1 -2.2203 -2.0507 -0.7572 45 1 -0.7217 -2.7446 -1.4214 46 1 -1.4927 -1.1078 -3.2894 47 1 -1.1361 0.8023 -6.0138 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001110358232.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:25:13 Heat of formation + Delta-G solvation = 66.158013 kcal Electronic energy + Delta-G solvation = -32348.586287 eV Core-core repulsion = 28149.067991 eV Total energy + Delta-G solvation = -4199.518297 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.69539 -41.42821 -39.01118 -37.90099 -35.04945 -34.02782 -33.26323 -32.07041 -31.21051 -31.14647 -29.69385 -28.66666 -27.53894 -26.53557 -24.28962 -23.73732 -21.70567 -21.67844 -21.00190 -20.36860 -19.73969 -18.89360 -18.13417 -17.84124 -16.75910 -16.73565 -16.27764 -15.80243 -15.59699 -15.16149 -14.98767 -14.60238 -14.50699 -14.38466 -13.90696 -13.82026 -13.55423 -13.17730 -13.13255 -12.95889 -12.67653 -12.33131 -12.14246 -12.05565 -11.93209 -11.60091 -11.47246 -11.37112 -11.21134 -11.06278 -10.99404 -10.68525 -10.48834 -10.45891 -10.28291 -10.02974 -9.55379 -9.40372 -9.28140 -9.08980 -8.63321 -8.20340 -8.03522 -6.47943 -3.89502 1.12382 2.24879 2.52340 2.81575 3.07699 3.15498 3.22565 3.26223 3.73611 3.80343 4.12907 4.15484 4.37154 4.52589 4.55680 4.61438 4.71926 4.88612 4.92964 5.04695 5.10152 5.11023 5.16478 5.22079 5.24274 5.32915 5.42962 5.45262 5.46874 5.59222 5.64845 5.71594 5.74612 5.90774 5.99408 6.08021 6.13312 6.15990 6.32000 6.37319 6.41122 6.52295 6.73357 7.04200 7.14025 7.49066 7.81767 7.96389 7.98307 8.52689 9.11048 9.44511 9.95877 10.69133 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.007754 B = 0.004836 C = 0.003247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3610.000628 B = 5788.003535 C = 8621.842012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.273 5.273 3 N -0.269 5.269 4 C -0.006 4.006 5 C -0.156 4.156 6 C -0.046 4.046 7 C 0.592 3.408 8 O -0.517 6.517 9 N -0.729 5.729 10 C 0.113 3.887 11 H 0.094 0.906 12 C -0.162 4.162 13 C 0.058 3.942 14 H 0.128 0.872 15 C -0.116 4.116 16 C -0.106 4.106 17 C 0.032 3.968 18 H 0.117 0.883 19 N -0.460 5.460 20 C 0.001 3.999 21 C 0.444 3.556 22 O -0.574 6.574 23 N -0.563 5.563 24 C -0.301 4.301 25 H 0.103 0.897 26 C 0.024 3.976 27 N -0.899 5.899 28 Si 0.930 3.070 29 H -0.274 1.274 30 H -0.284 1.284 31 H -0.272 1.272 32 H 0.092 0.908 33 H 0.117 0.883 34 H 0.092 0.908 35 H 0.189 0.811 36 H 0.164 0.836 37 H 0.398 0.602 38 H 0.073 0.927 39 H 0.080 0.920 40 H 0.074 0.926 41 H 0.068 0.932 42 H 0.070 0.930 43 H 0.077 0.923 44 H 0.083 0.917 45 H 0.067 0.933 46 H 0.387 0.613 47 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.930 -2.786 15.751 17.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.064 5.064 3 N -0.102 5.102 4 C -0.182 4.182 5 C -0.185 4.185 6 C -0.173 4.173 7 C 0.377 3.623 8 O -0.391 6.391 9 N -0.387 5.387 10 C 0.008 3.992 11 H 0.112 0.888 12 C -0.202 4.202 13 C -0.050 4.050 14 H 0.146 0.854 15 C -0.154 4.154 16 C -0.145 4.145 17 C -0.077 4.077 18 H 0.134 0.866 19 N -0.183 5.183 20 C -0.131 4.131 21 C 0.229 3.771 22 O -0.457 6.457 23 N -0.199 5.199 24 C -0.430 4.430 25 H 0.120 0.880 26 C -0.178 4.178 27 N -0.540 5.540 28 Si 0.757 3.243 29 H -0.200 1.200 30 H -0.210 1.210 31 H -0.198 1.198 32 H 0.110 0.890 33 H 0.136 0.864 34 H 0.110 0.890 35 H 0.206 0.794 36 H 0.181 0.819 37 H 0.240 0.760 38 H 0.092 0.908 39 H 0.099 0.901 40 H 0.093 0.907 41 H 0.087 0.913 42 H 0.088 0.912 43 H 0.096 0.904 44 H 0.101 0.899 45 H 0.084 0.916 46 H 0.220 0.780 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.520 -3.015 15.308 16.244 hybrid contribution 1.169 0.639 -0.799 1.553 sum 5.688 -2.376 14.509 15.764 Atomic orbital electron populations 1.22512 0.73630 1.07053 1.04132 1.45666 1.07336 1.02489 1.50871 1.73185 1.04376 1.13657 1.18960 1.23624 0.93483 0.94868 1.06230 1.22178 0.95664 0.95010 1.05614 1.21737 0.92384 0.88296 1.14905 1.17015 0.82519 0.86165 0.76582 1.90830 1.53543 1.46025 1.48693 1.46910 1.07304 1.09685 1.74806 1.22944 0.96805 0.81131 0.98346 0.88757 1.23761 0.98940 1.01451 0.96077 1.24545 0.89377 0.91244 0.99855 0.85382 1.22621 1.02145 0.96689 0.93943 1.22485 1.02143 0.92366 0.97469 1.24834 0.89432 0.99041 0.94403 0.86557 1.67532 1.48351 1.01836 1.00533 1.22604 1.00127 0.93568 0.96798 1.19595 0.86577 0.84551 0.86383 1.90525 1.41092 1.37717 1.76376 1.41831 1.39834 1.22065 1.16198 1.19629 1.17899 1.13718 0.91795 0.87955 1.25261 0.96507 0.96270 0.99731 1.69616 1.26619 1.19657 1.38135 0.85928 0.79343 0.78117 0.80936 1.19959 1.20954 1.19765 0.89003 0.86426 0.88956 0.79434 0.81866 0.76001 0.90801 0.90090 0.90707 0.91306 0.91175 0.90422 0.89930 0.91562 0.77989 0.91765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.66 9.77 59.85 0.58 1.24 16 2 N -0.27 -3.50 3.75 -63.89 -0.24 -3.74 16 3 N -0.27 -3.63 11.90 30.59 0.36 -3.27 16 4 C -0.01 -0.07 12.03 -17.43 -0.21 -0.28 16 5 C -0.16 -1.96 10.85 -38.99 -0.42 -2.39 16 6 C -0.05 -0.64 6.96 -82.06 -0.57 -1.21 16 7 C 0.59 8.54 7.68 -12.64 -0.10 8.44 16 8 O -0.52 -8.80 16.67 5.25 0.09 -8.72 16 9 N -0.73 -8.88 3.46 -52.59 -0.18 -9.06 16 10 C 0.11 1.36 2.45 -65.47 -0.16 1.20 16 11 H 0.09 1.10 7.72 -51.93 -0.40 0.70 16 12 C -0.16 -2.30 5.16 -24.25 -0.13 -2.42 16 13 C 0.06 0.88 4.25 -62.58 -0.27 0.61 16 14 H 0.13 2.36 7.00 -51.93 -0.36 1.99 16 15 C -0.12 -1.35 6.44 -24.24 -0.16 -1.50 16 16 C -0.11 -1.05 6.44 -24.25 -0.16 -1.20 16 17 C 0.03 0.36 4.60 -62.60 -0.29 0.07 16 18 H 0.12 1.06 8.14 -51.92 -0.42 0.64 16 19 N -0.46 -6.98 5.29 -207.07 -1.10 -8.07 16 20 C 0.00 0.02 3.54 -4.97 -0.02 0.00 16 21 C 0.44 9.97 7.46 -10.98 -0.08 9.89 16 22 O -0.57 -14.92 14.62 5.55 0.08 -14.83 16 23 N -0.56 -13.63 5.27 -10.96 -0.06 -13.69 16 24 C -0.30 -8.16 9.66 -14.93 -0.14 -8.30 16 25 H 0.10 2.92 7.20 -52.49 -0.38 2.54 16 26 C 0.02 0.64 5.50 -17.47 -0.10 0.54 16 27 N -0.90 -24.01 13.08 55.50 0.73 -23.29 16 28 Si 0.93 20.77 29.56 -169.99 -5.02 15.74 16 29 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 30 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 31 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 32 H 0.09 0.62 8.11 -51.93 -0.42 0.19 16 33 H 0.12 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.09 0.95 4.48 -51.93 -0.23 0.72 16 35 H 0.19 1.52 8.06 -52.49 -0.42 1.10 16 36 H 0.16 1.80 8.06 -52.49 -0.42 1.37 16 37 H 0.40 4.26 2.79 -40.82 -0.11 4.15 16 38 H 0.07 1.24 7.09 -51.93 -0.37 0.88 16 39 H 0.08 1.07 7.82 -51.93 -0.41 0.66 16 40 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.07 0.69 7.82 -51.93 -0.41 0.29 16 42 H 0.07 0.57 7.82 -51.93 -0.41 0.16 16 43 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 44 H 0.08 1.14 7.75 -51.93 -0.40 0.74 16 45 H 0.07 1.03 3.16 -51.93 -0.16 0.87 16 46 H 0.39 8.96 7.94 -40.82 -0.32 8.64 16 47 H 0.27 6.96 8.31 -40.82 -0.34 6.63 16 LS Contribution 371.38 15.07 5.60 5.60 Total: -1.00 -34.10 371.38 -8.01 -42.11 By element: Atomic # 1 Polarization: 22.59 SS G_CDS: -6.06 Total: 16.53 kcal Atomic # 6 Polarization: 6.90 SS G_CDS: -2.21 Total: 4.69 kcal Atomic # 7 Polarization: -60.64 SS G_CDS: -0.48 Total: -61.12 kcal Atomic # 8 Polarization: -23.72 SS G_CDS: 0.17 Total: -23.55 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.10 -8.01 -42.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110358232.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.265 kcal (2) G-P(sol) polarization free energy of solvation -34.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds