Wall clock time and date at job start Wed Apr 1 2020 05:25:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.28444 * 125.19342 * 2 1 4 4 C 1.30858 * 110.93068 * 179.97438 * 3 2 1 5 5 C 1.39675 * 107.85977 * 359.75911 * 4 3 2 6 6 C 1.36602 * 125.19155 * 179.97438 * 2 1 3 7 7 C 1.47161 * 126.87996 * 0.02562 * 6 2 1 8 8 O 1.21634 * 120.00117 * 173.69039 * 7 6 2 9 9 N 1.34773 * 120.00476 * 353.96170 * 7 6 2 10 10 C 1.46501 * 120.00488 * 184.77457 * 9 7 6 11 11 H 1.09004 * 110.54171 * 46.31199 * 10 9 7 12 12 C 1.54834 * 110.61531 * 283.44600 * 10 9 7 13 13 C 1.55843 * 103.51868 * 241.48859 * 12 10 9 14 14 H 1.09001 * 115.58224 * 158.89094 * 13 12 10 15 15 C 1.55852 * 105.03388 * 288.27164 * 13 12 10 16 16 C 1.54838 * 103.51715 * 71.73163 * 15 13 12 17 17 C 1.55843 * 103.51897 * 359.97438 * 16 15 13 18 18 H 1.09008 * 116.14973 * 159.23254 * 17 16 15 19 19 N 1.50642 * 101.02822 * 32.99608 * 17 16 15 20 20 C 1.46903 * 111.00068 * 189.76081 * 19 17 16 21 21 C 1.50704 * 109.47205 * 176.02059 * 20 19 17 22 22 O 1.21291 * 119.99678 * 6.47651 * 21 20 19 23 23 N 1.34780 * 119.99781 * 186.47960 * 21 20 19 24 24 C 1.37100 * 119.99503 * 185.05851 * 23 21 20 25 25 H 1.07994 * 120.00264 * 5.28639 * 24 23 21 26 26 C 1.38952 * 119.99611 * 185.29770 * 24 23 21 27 27 N 1.31413 * 119.99984 * 5.20362 * 26 24 23 28 28 Si 1.86799 * 119.99965 * 185.20711 * 26 24 23 29 29 H 1.48499 * 109.47491 * 64.99346 * 28 26 24 30 30 H 1.48500 * 109.47144 * 184.99827 * 28 26 24 31 31 H 1.48504 * 109.47172 * 304.99590 * 28 26 24 32 32 H 1.08998 * 109.47571 * 262.10002 * 1 2 3 33 33 H 1.08995 * 109.47031 * 22.09974 * 1 2 3 34 34 H 1.08997 * 109.46906 * 142.10088 * 1 2 3 35 35 H 1.08001 * 126.07379 * 180.02562 * 4 3 2 36 36 H 1.08002 * 127.31960 * 180.26647 * 5 4 3 37 37 H 0.97004 * 119.99788 * 4.78603 * 9 7 6 38 38 H 1.08992 * 110.61226 * 359.97438 * 12 10 9 39 39 H 1.09003 * 110.61039 * 122.98343 * 12 10 9 40 40 H 1.08999 * 110.61149 * 190.23764 * 15 13 12 41 41 H 1.08992 * 110.61521 * 313.22275 * 15 13 12 42 42 H 1.09007 * 110.61167 * 241.49130 * 16 15 13 43 43 H 1.08996 * 110.61530 * 118.50705 * 16 15 13 44 44 H 1.09003 * 109.47212 * 296.01698 * 20 19 17 45 45 H 1.09000 * 109.47675 * 56.01876 * 20 19 17 46 46 H 0.96997 * 120.00066 * 5.05033 * 23 21 20 47 47 H 0.97005 * 119.99630 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2053 1.0497 0.0000 4 6 3.4735 0.7273 0.0005 5 6 3.5611 -0.6667 0.0065 6 6 2.2522 -1.1164 0.0005 7 6 1.7992 -2.5165 0.0006 8 8 2.6082 -3.4175 -0.1147 9 7 0.4875 -2.8004 0.1229 10 6 0.0461 -4.1934 0.2283 11 1 0.6613 -4.7363 0.9459 12 6 0.0862 -4.8842 -1.1568 13 6 -1.3999 -5.2794 -1.4100 14 1 -1.6703 -5.4515 -2.4518 15 6 -1.6793 -6.4543 -0.4248 16 6 -1.7194 -5.7634 0.9603 17 6 -1.4583 -4.2636 0.6270 18 1 -1.7803 -3.5416 1.3776 19 7 -2.1190 -4.1489 -0.7219 20 6 -1.8034 -2.8614 -1.3549 21 6 -2.3989 -2.8226 -2.7388 22 8 -3.1219 -3.7216 -3.1132 23 7 -2.1279 -1.7890 -3.5603 24 6 -2.7502 -1.7005 -4.7787 25 1 -3.5194 -2.4102 -5.0450 26 6 -2.3910 -0.6977 -5.6710 27 7 -1.3866 0.1020 -5.3910 28 14 -3.3361 -0.4864 -7.2683 29 1 -4.7338 -0.0851 -6.9673 30 1 -2.6862 0.5639 -8.0928 31 1 -3.3397 -1.7700 -8.0150 32 1 -0.3634 -0.1412 1.0179 33 1 -0.3633 0.9521 -0.3866 34 1 -0.3633 -0.8109 -0.6313 35 1 4.3049 1.4166 0.0011 36 1 4.4594 -1.2663 0.0125 37 1 -0.1645 -2.0824 0.1411 38 1 0.4339 -4.1901 -1.9218 39 1 0.7190 -5.7711 -1.1251 40 1 -2.6379 -6.9225 -0.6480 41 1 -0.8742 -7.1880 -0.4645 42 1 -0.9341 -6.1547 1.6072 43 1 -2.6979 -5.8892 1.4237 44 1 -2.2203 -2.0507 -0.7572 45 1 -0.7217 -2.7446 -1.4214 46 1 -1.4927 -1.1078 -3.2894 47 1 -1.1361 0.8023 -6.0138 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001110358232.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:25:12 Heat of formation + Delta-G solvation = 39.956196 kcal Electronic energy + Delta-G solvation = -32349.722483 eV Core-core repulsion = 28149.067991 eV Total energy + Delta-G solvation = -4200.654493 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -43.64529 -42.52377 -40.21615 -39.64731 -36.12137 -35.95575 -34.17851 -33.51752 -32.99319 -32.14364 -30.73892 -29.68627 -28.43541 -28.04332 -26.00758 -24.77789 -22.64923 -22.62626 -22.04139 -21.81405 -20.70687 -20.49086 -19.79020 -19.04946 -17.94046 -17.79700 -17.39981 -17.08224 -16.87714 -16.50155 -16.35395 -15.99723 -15.75963 -15.57163 -15.47190 -14.90600 -14.74571 -14.49288 -14.19443 -13.90846 -13.72202 -13.59221 -13.44027 -13.30974 -13.13723 -13.06675 -12.87655 -12.63627 -12.45695 -12.35958 -12.18984 -12.15091 -12.00119 -11.74555 -11.50052 -11.47249 -11.06883 -10.49272 -10.36210 -10.22638 -10.05098 -10.04042 -9.53197 -8.49901 -5.98630 0.10487 1.36182 1.37250 1.38885 1.49250 1.59288 1.81732 1.99547 2.04305 2.24575 2.64003 3.14100 3.18408 3.24766 3.46378 3.57433 3.61975 3.68389 3.98464 4.01703 4.08141 4.12236 4.14998 4.19150 4.23712 4.31836 4.41686 4.44172 4.45509 4.50866 4.53623 4.65554 4.70937 4.85385 4.88313 5.02008 5.10966 5.25748 5.29016 5.32477 5.37453 5.46698 5.63105 5.66621 5.79154 6.02073 6.12581 6.55741 6.79803 6.97911 7.09589 7.51008 8.06947 8.66487 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.007754 B = 0.004836 C = 0.003247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3610.000628 B = 5788.003535 C = 8621.842012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.274 5.274 3 N -0.290 5.290 4 C -0.004 4.004 5 C -0.164 4.164 6 C -0.068 4.068 7 C 0.592 3.408 8 O -0.550 6.550 9 N -0.718 5.718 10 C 0.118 3.882 11 H 0.109 0.891 12 C -0.157 4.157 13 C 0.046 3.954 14 H 0.082 0.918 15 C -0.110 4.110 16 C -0.099 4.099 17 C 0.044 3.956 18 H 0.149 0.851 19 N -0.480 5.480 20 C 0.016 3.984 21 C 0.441 3.559 22 O -0.613 6.613 23 N -0.572 5.572 24 C -0.332 4.332 25 H 0.078 0.922 26 C -0.010 4.010 27 N -0.918 5.918 28 Si 0.989 3.011 29 H -0.267 1.267 30 H -0.272 1.272 31 H -0.276 1.276 32 H 0.127 0.873 33 H 0.122 0.878 34 H 0.084 0.916 35 H 0.220 0.780 36 H 0.174 0.826 37 H 0.406 0.594 38 H 0.037 0.963 39 H 0.088 0.912 40 H 0.066 0.934 41 H 0.085 0.915 42 H 0.098 0.902 43 H 0.089 0.911 44 H 0.116 0.884 45 H 0.074 0.926 46 H 0.392 0.608 47 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.024 -2.312 18.023 19.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.065 5.065 3 N -0.123 5.123 4 C -0.180 4.180 5 C -0.193 4.193 6 C -0.195 4.195 7 C 0.378 3.622 8 O -0.426 6.426 9 N -0.376 5.376 10 C 0.012 3.988 11 H 0.127 0.873 12 C -0.197 4.197 13 C -0.063 4.063 14 H 0.100 0.900 15 C -0.148 4.148 16 C -0.137 4.137 17 C -0.065 4.065 18 H 0.166 0.834 19 N -0.202 5.202 20 C -0.116 4.116 21 C 0.228 3.772 22 O -0.498 6.498 23 N -0.210 5.210 24 C -0.461 4.461 25 H 0.096 0.904 26 C -0.210 4.210 27 N -0.559 5.559 28 Si 0.813 3.187 29 H -0.192 1.192 30 H -0.197 1.197 31 H -0.201 1.201 32 H 0.145 0.855 33 H 0.140 0.860 34 H 0.102 0.898 35 H 0.237 0.763 36 H 0.191 0.809 37 H 0.249 0.751 38 H 0.056 0.944 39 H 0.107 0.893 40 H 0.085 0.915 41 H 0.104 0.896 42 H 0.117 0.883 43 H 0.108 0.892 44 H 0.133 0.867 45 H 0.092 0.908 46 H 0.225 0.775 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.593 -2.520 17.605 18.368 hybrid contribution 1.147 0.442 -1.524 1.958 sum 5.740 -2.078 16.082 17.201 Atomic orbital electron populations 1.22786 0.72337 1.06992 1.06188 1.45886 1.08172 1.01958 1.50455 1.73178 1.05241 1.14136 1.19775 1.24188 0.93813 0.95072 1.04880 1.22487 0.95831 0.95717 1.05262 1.21822 0.93227 0.88333 1.16148 1.17142 0.82833 0.86181 0.76031 1.90805 1.54448 1.46922 1.50436 1.46842 1.06829 1.10118 1.73819 1.22987 0.97926 0.80884 0.96965 0.87301 1.23676 0.98206 1.01207 0.96572 1.24392 0.90029 0.93313 0.98564 0.90029 1.22603 1.02349 0.95712 0.94151 1.22539 1.03945 0.90791 0.96384 1.25073 0.87805 1.01021 0.92585 0.83351 1.67538 1.49414 1.00817 1.02450 1.22488 1.00092 0.95721 0.93324 1.20698 0.85238 0.82970 0.88245 1.90497 1.42679 1.38892 1.77771 1.41882 1.40187 1.22922 1.15973 1.19581 1.18610 1.14261 0.93674 0.90383 1.25990 0.97133 0.95564 1.02360 1.69682 1.27254 1.19861 1.39126 0.85040 0.78443 0.77975 0.77237 1.19218 1.19705 1.20128 0.85515 0.85991 0.89824 0.76304 0.80864 0.75054 0.94378 0.89320 0.91498 0.89627 0.88331 0.89213 0.86662 0.90815 0.77505 0.91426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.00 9.77 127.77 1.25 2.25 16 2 N -0.27 -6.68 3.75 -356.04 -1.33 -8.01 16 3 N -0.29 -7.44 11.90 -57.14 -0.68 -8.12 16 4 C 0.00 -0.09 12.03 85.19 1.02 0.93 16 5 C -0.16 -3.97 10.85 22.66 0.25 -3.73 16 6 C -0.07 -1.82 6.96 40.78 0.28 -1.54 16 7 C 0.59 16.57 7.68 86.59 0.66 17.24 16 8 O -0.55 -18.50 16.67 -4.14 -0.07 -18.57 16 9 N -0.72 -16.25 3.46 -438.53 -1.52 -17.76 16 10 C 0.12 2.56 2.45 46.58 0.11 2.68 16 11 H 0.11 2.17 7.72 -2.39 -0.02 2.15 16 12 C -0.16 -4.41 5.16 32.20 0.17 -4.25 16 13 C 0.05 1.40 4.25 46.15 0.20 1.59 16 14 H 0.08 3.25 7.00 -2.39 -0.02 3.23 16 15 C -0.11 -2.39 6.44 32.21 0.21 -2.19 16 16 C -0.10 -1.57 6.44 32.20 0.21 -1.36 16 17 C 0.04 0.82 4.60 46.13 0.21 1.03 16 18 H 0.15 1.93 8.14 -2.38 -0.02 1.91 16 19 N -0.48 -14.00 5.29 -809.04 -4.28 -18.28 16 20 C 0.02 0.50 3.54 85.56 0.30 0.80 16 21 C 0.44 20.44 7.46 87.66 0.65 21.09 16 22 O -0.61 -33.33 14.62 -3.06 -0.04 -33.37 16 23 N -0.57 -28.65 5.27 -306.98 -1.62 -30.27 16 24 C -0.33 -18.61 9.66 84.04 0.81 -17.80 16 25 H 0.08 4.68 7.20 -2.91 -0.02 4.66 16 26 C -0.01 -0.55 5.50 84.93 0.47 -0.09 16 27 N -0.92 -49.37 13.08 21.66 0.28 -49.09 16 28 Si 0.99 42.89 29.56 68.60 2.03 44.91 16 29 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 30 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 31 H -0.28 -12.03 7.11 99.48 0.71 -11.33 16 32 H 0.13 1.30 8.11 -2.39 -0.02 1.28 16 33 H 0.12 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.08 1.61 4.48 -2.39 -0.01 1.60 16 35 H 0.22 3.04 8.06 -2.91 -0.02 3.01 16 36 H 0.17 3.68 8.06 -2.91 -0.02 3.65 16 37 H 0.41 7.80 2.79 -92.70 -0.26 7.54 16 38 H 0.04 1.33 7.09 -2.39 -0.02 1.31 16 39 H 0.09 2.31 7.82 -2.39 -0.02 2.29 16 40 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.09 1.56 7.82 -2.39 -0.02 1.54 16 42 H 0.10 1.10 7.82 -2.38 -0.02 1.08 16 43 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 44 H 0.12 2.93 7.75 -2.39 -0.02 2.91 16 45 H 0.07 2.28 3.16 -2.39 -0.01 2.28 16 46 H 0.39 18.60 7.94 -92.71 -0.74 17.86 16 47 H 0.28 14.07 8.31 -92.70 -0.77 13.30 16 Total: -1.00 -77.42 371.38 -0.38 -77.80 By element: Atomic # 1 Polarization: 44.04 SS G_CDS: 0.05 Total: 44.09 kcal Atomic # 6 Polarization: 9.87 SS G_CDS: 6.81 Total: 16.68 kcal Atomic # 7 Polarization: -122.39 SS G_CDS: -9.15 Total: -131.54 kcal Atomic # 8 Polarization: -51.83 SS G_CDS: -0.11 Total: -51.94 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.91 kcal Total: -77.42 -0.38 -77.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110358232.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.759 kcal (2) G-P(sol) polarization free energy of solvation -77.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.803 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds