Wall clock time and date at job start Wed Apr 1 2020 05:32:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.35843 * 126.13762 * 2 1 4 4 N 1.30175 * 109.00528 * 180.02562 * 3 2 1 5 5 C 1.35754 * 108.86464 * 359.97438 * 4 3 2 6 6 C 1.47331 * 126.23457 * 179.97438 * 5 4 3 7 7 O 1.21629 * 119.99752 * 180.02562 * 6 5 4 8 8 N 1.34775 * 119.99840 * 0.02562 * 6 5 4 9 9 C 1.46498 * 119.99900 * 179.97438 * 8 6 5 10 10 H 1.09008 * 110.66665 * 32.05277 * 9 8 6 11 11 C 1.54830 * 110.61648 * 269.10180 * 9 8 6 12 12 C 1.55846 * 103.51899 * 241.49065 * 11 9 8 13 13 H 1.09003 * 116.15124 * 159.22385 * 12 11 9 14 14 C 1.55847 * 105.03201 * 288.27042 * 12 11 9 15 15 C 1.54830 * 103.51829 * 71.72907 * 14 12 11 16 16 C 1.55848 * 110.61235 * 155.00157 * 9 8 6 17 17 H 1.09008 * 116.14713 * 319.28052 * 16 9 8 18 18 N 1.50642 * 101.02655 * 85.51542 * 16 9 8 19 19 C 1.46904 * 110.99756 * 170.23770 * 18 16 9 20 20 C 1.50700 * 109.47124 * 170.00278 * 19 18 16 21 21 O 1.21292 * 119.99931 * 359.97438 * 20 19 18 22 22 N 1.34774 * 119.99956 * 180.02562 * 20 19 18 23 23 C 1.37104 * 119.99857 * 179.97438 * 22 20 19 24 24 H 1.07995 * 120.00058 * 0.27796 * 23 22 20 25 25 C 1.38955 * 119.99721 * 179.97438 * 23 22 20 26 26 N 1.31411 * 120.00276 * 0.02562 * 25 23 22 27 27 Si 1.86803 * 119.99625 * 180.02562 * 25 23 22 28 28 H 1.48500 * 109.46986 * 90.00449 * 27 25 23 29 29 H 1.48496 * 109.47029 * 210.00465 * 27 25 23 30 30 H 1.48499 * 109.47352 * 330.00295 * 27 25 23 31 31 C 1.35378 * 126.13344 * 180.29595 * 2 1 3 32 32 H 1.09000 * 109.47438 * 89.97348 * 1 2 3 33 33 H 1.09003 * 109.47513 * 209.97314 * 1 2 3 34 34 H 1.09005 * 109.47136 * 329.97403 * 1 2 3 35 35 H 1.08005 * 125.49555 * 0.03656 * 3 2 1 36 36 H 0.97003 * 120.00053 * 0.02562 * 8 6 5 37 37 H 1.09001 * 110.61696 * 122.97977 * 11 9 8 38 38 H 1.09006 * 110.61525 * 0.02562 * 11 9 8 39 39 H 1.09002 * 110.61035 * 313.21561 * 14 12 11 40 40 H 1.09004 * 110.61153 * 190.23553 * 14 12 11 41 41 H 1.09005 * 110.61187 * 241.48897 * 15 14 12 42 42 H 1.08999 * 110.74786 * 118.56987 * 15 14 12 43 43 H 1.08997 * 109.47232 * 49.99879 * 19 18 16 44 44 H 1.09002 * 109.47005 * 290.00377 * 19 18 16 45 45 H 0.96999 * 120.00050 * 0.02562 * 22 20 19 46 46 H 0.97000 * 119.99719 * 179.97438 * 26 25 23 47 47 H 1.08005 * 126.56427 * 359.97438 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2661 1.0971 0.0000 4 7 3.5100 0.7136 -0.0006 5 6 3.5511 -0.6433 -0.0003 6 6 4.7652 -1.4779 -0.0013 7 8 4.6697 -2.6904 -0.0015 8 7 5.9817 -0.8976 -0.0021 9 6 7.1890 -1.7275 -0.0025 10 1 7.0161 -2.6579 -0.5435 11 6 7.6519 -2.0172 1.4463 12 6 9.0704 -1.3750 1.5109 13 1 9.4483 -1.1441 2.5069 14 6 9.9747 -2.3046 0.6467 15 6 9.5119 -2.0149 -0.8021 16 6 8.3897 -0.9488 -0.6197 17 1 8.1686 -0.3431 -1.4986 18 7 8.8969 -0.1995 0.5847 19 6 10.1877 0.4417 0.3006 20 6 10.5442 1.3749 1.4290 21 8 9.7963 1.4943 2.3764 22 7 11.6935 2.0774 1.3849 23 6 12.0176 2.9267 2.4112 24 1 11.3540 3.0294 3.2571 25 6 13.2028 3.6506 2.3660 26 7 14.0128 3.5216 1.3393 27 14 13.6446 4.8073 3.7647 28 1 14.4250 4.0689 4.7899 29 1 14.4586 5.9323 3.2383 30 1 12.4015 5.3403 4.3778 31 6 2.2632 -1.0934 -0.0056 32 1 -0.3634 0.0005 -1.0276 33 1 -0.3634 -0.8902 0.5134 34 1 -0.3634 0.8898 0.5143 35 1 1.9257 2.1221 0.0006 36 1 6.0578 0.0694 -0.0016 37 1 7.7085 -3.0912 1.6236 38 1 6.9828 -1.5438 2.1649 39 1 9.8047 -3.3506 0.9021 40 1 11.0254 -2.0435 0.7734 41 1 9.1124 -2.9173 -1.2650 42 1 10.3318 -1.6110 -1.3959 43 1 10.1161 1.0063 -0.6290 44 1 10.9592 -0.3221 0.2032 45 1 12.2910 1.9827 0.6267 46 1 14.8400 4.0272 1.3076 47 1 1.9420 -2.1245 -0.0106 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001110443607.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:32:57 Heat of formation + Delta-G solvation = 25.413740 kcal Electronic energy + Delta-G solvation = -30314.713950 eV Core-core repulsion = 26113.428849 eV Total energy + Delta-G solvation = -4201.285101 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.39323 -40.93669 -38.88708 -37.70325 -34.55244 -34.23175 -33.78076 -31.41439 -30.91900 -30.13605 -29.69380 -28.96765 -27.50677 -26.32130 -24.14222 -23.61656 -21.80810 -21.33602 -20.35723 -19.95215 -19.59088 -18.84148 -18.07491 -17.73950 -16.41360 -16.32425 -16.24058 -16.15917 -15.32585 -15.10044 -14.69353 -14.50422 -14.45891 -14.17506 -13.99315 -13.77215 -13.59270 -13.29992 -13.21394 -13.17145 -12.78216 -12.22741 -12.05446 -11.91650 -11.64701 -11.44134 -11.25579 -11.15296 -11.08010 -10.80175 -10.64297 -10.49036 -10.34473 -10.31420 -10.14860 -10.06531 -9.86310 -9.42249 -9.02876 -8.76331 -8.45922 -7.98170 -7.87686 -6.34632 -3.74841 1.41248 2.24506 2.30593 3.22400 3.30331 3.33293 3.36771 3.54716 3.96692 4.03699 4.21137 4.24254 4.28671 4.48717 4.52521 4.57873 4.75801 4.84867 4.88820 4.97345 5.15660 5.21011 5.25170 5.29717 5.37739 5.41219 5.44300 5.57625 5.66115 5.72853 5.80144 5.86715 5.93124 6.01538 6.13791 6.16230 6.19971 6.34348 6.38701 6.45908 6.65388 6.71631 6.94053 7.26516 7.48495 7.61877 7.82500 8.14406 8.36436 8.70795 9.26403 9.63692 10.16671 10.83426 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013337 B = 0.002352 C = 0.002082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2098.902516 B =11901.187867 C =13446.732576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.463 5.463 3 C 0.184 3.816 4 N -0.457 5.457 5 C -0.060 4.060 6 C 0.603 3.397 7 O -0.555 6.555 8 N -0.697 5.697 9 C 0.155 3.845 10 H 0.095 0.905 11 C -0.122 4.122 12 C 0.057 3.943 13 H 0.120 0.880 14 C -0.159 4.159 15 C -0.150 4.150 16 C 0.033 3.967 17 H 0.117 0.883 18 N -0.463 5.463 19 C 0.024 3.976 20 C 0.448 3.552 21 O -0.575 6.575 22 N -0.569 5.569 23 C -0.295 4.295 24 H 0.102 0.898 25 C 0.020 3.980 26 N -0.904 5.904 27 Si 0.928 3.072 28 H -0.279 1.279 29 H -0.284 1.284 30 H -0.270 1.270 31 C 0.029 3.971 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.212 0.788 36 H 0.416 0.584 37 H 0.072 0.928 38 H 0.076 0.924 39 H 0.072 0.928 40 H 0.071 0.929 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.085 0.915 44 H 0.061 0.939 45 H 0.391 0.609 46 H 0.270 0.730 47 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.775 -10.524 -7.700 26.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.145 5.145 3 C -0.099 4.099 4 N -0.176 5.176 5 C -0.189 4.189 6 C 0.389 3.611 7 O -0.434 6.434 8 N -0.346 5.346 9 C 0.049 3.951 10 H 0.113 0.887 11 C -0.161 4.161 12 C -0.051 4.051 13 H 0.138 0.862 14 C -0.198 4.198 15 C -0.189 4.189 16 C -0.076 4.076 17 H 0.135 0.865 18 N -0.185 5.185 19 C -0.108 4.108 20 C 0.233 3.767 21 O -0.458 6.458 22 N -0.207 5.207 23 C -0.425 4.425 24 H 0.120 0.880 25 C -0.181 4.181 26 N -0.546 5.546 27 Si 0.756 3.244 28 H -0.205 1.205 29 H -0.210 1.210 30 H -0.195 1.195 31 C -0.110 4.110 32 H 0.099 0.901 33 H 0.107 0.893 34 H 0.110 0.890 35 H 0.228 0.772 36 H 0.252 0.748 37 H 0.091 0.909 38 H 0.095 0.905 39 H 0.091 0.909 40 H 0.089 0.911 41 H 0.090 0.910 42 H 0.091 0.909 43 H 0.103 0.897 44 H 0.079 0.921 45 H 0.224 0.776 46 H 0.080 0.920 47 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -22.958 -10.169 -6.868 26.032 hybrid contribution 0.620 0.053 -0.162 0.643 sum -22.338 -10.117 -7.031 25.510 Atomic orbital electron populations 1.22138 0.75900 1.05157 1.03989 1.45369 1.08203 1.06972 1.53979 1.25249 0.85153 0.93601 1.05926 1.70671 1.19434 1.10355 1.17130 1.20627 0.93216 0.90583 1.14481 1.16904 0.82117 0.86267 0.75784 1.90768 1.87010 1.13433 1.52190 1.45765 1.04298 1.11502 1.73081 1.22051 0.82760 0.93681 0.96591 0.88710 1.23053 0.96433 1.00032 0.96625 1.24449 0.94330 0.88391 0.97972 0.86196 1.23355 1.00776 1.00641 0.94985 1.23227 0.98844 0.99461 0.97355 1.24790 0.94199 0.93789 0.94830 0.86490 1.67454 1.23555 1.21394 1.06089 1.22127 0.91787 0.97925 0.98997 1.19751 0.83362 0.84821 0.88730 1.90523 1.50997 1.68462 1.35828 1.41864 1.18656 1.38544 1.21590 1.19679 1.04437 1.18042 1.00298 0.88035 1.25236 0.95950 0.98756 0.98157 1.69614 1.12278 1.42783 1.29932 0.85880 0.78582 0.79442 0.80513 1.20526 1.21004 1.19461 1.22578 0.90268 0.93137 1.05002 0.90129 0.89315 0.88979 0.77164 0.74782 0.90917 0.90489 0.90949 0.91082 0.90979 0.90906 0.89679 0.92088 0.77619 0.92018 0.79593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.16 11.15 59.84 0.67 0.82 16 2 N -0.46 -3.31 3.13 -125.77 -0.39 -3.70 16 3 C 0.18 1.60 12.55 -89.91 -1.13 0.47 16 4 N -0.46 -5.81 11.01 -11.03 -0.12 -5.94 16 5 C -0.06 -0.78 6.98 -83.09 -0.58 -1.36 16 6 C 0.60 8.90 7.81 -12.56 -0.10 8.80 16 7 O -0.56 -9.22 16.53 5.25 0.09 -9.13 16 8 N -0.70 -9.88 5.07 -52.50 -0.27 -10.14 16 9 C 0.15 2.08 2.80 -65.45 -0.18 1.90 16 10 H 0.09 1.26 7.23 -51.92 -0.38 0.88 16 11 C -0.12 -1.74 6.22 -24.25 -0.15 -1.89 16 12 C 0.06 0.90 4.57 -62.56 -0.29 0.61 16 13 H 0.12 2.17 7.96 -51.93 -0.41 1.76 16 14 C -0.16 -2.04 5.63 -24.25 -0.14 -2.18 16 15 C -0.15 -1.73 5.63 -24.25 -0.14 -1.87 16 16 C 0.03 0.44 4.51 -62.56 -0.28 0.16 16 17 H 0.12 1.42 8.14 -51.92 -0.42 1.00 16 18 N -0.46 -7.76 5.09 -207.01 -1.05 -8.81 16 19 C 0.02 0.43 4.83 -4.97 -0.02 0.40 16 20 C 0.45 10.79 7.72 -10.99 -0.08 10.70 16 21 O -0.58 -15.94 15.58 5.55 0.09 -15.85 16 22 N -0.57 -14.67 5.29 -10.96 -0.06 -14.73 16 23 C -0.29 -8.36 9.68 -14.93 -0.14 -8.51 16 24 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 25 C 0.02 0.55 5.50 -17.47 -0.10 0.45 16 26 N -0.90 -24.98 13.05 55.50 0.72 -24.25 16 27 Si 0.93 21.46 29.55 -169.99 -5.02 16.44 16 28 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 29 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 30 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 31 C 0.03 0.28 11.26 -16.64 -0.19 0.10 16 32 H 0.08 0.10 8.14 -51.93 -0.42 -0.33 16 33 H 0.09 0.11 8.14 -51.93 -0.42 -0.31 16 34 H 0.09 0.05 8.14 -51.93 -0.42 -0.37 16 35 H 0.21 1.00 8.06 -52.48 -0.42 0.57 16 36 H 0.42 6.14 8.37 -40.82 -0.34 5.80 16 37 H 0.07 0.93 7.82 -51.93 -0.41 0.52 16 38 H 0.08 1.23 7.98 -51.93 -0.41 0.81 16 39 H 0.07 0.82 7.82 -51.93 -0.41 0.41 16 40 H 0.07 0.96 6.95 -51.93 -0.36 0.60 16 41 H 0.07 0.73 7.82 -51.93 -0.41 0.33 16 42 H 0.07 0.82 7.64 -51.93 -0.40 0.42 16 43 H 0.08 1.41 8.09 -51.93 -0.42 0.99 16 44 H 0.06 1.01 5.10 -51.93 -0.26 0.74 16 45 H 0.39 9.65 7.90 -40.82 -0.32 9.32 16 46 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 47 H 0.19 1.45 8.06 -52.48 -0.42 1.03 16 LS Contribution 387.25 15.07 5.84 5.84 Total: -1.00 -36.35 387.25 -9.61 -45.96 By element: Atomic # 1 Polarization: 22.30 SS G_CDS: -6.57 Total: 15.72 kcal Atomic # 6 Polarization: 11.45 SS G_CDS: -2.85 Total: 8.60 kcal Atomic # 7 Polarization: -66.41 SS G_CDS: -1.17 Total: -67.58 kcal Atomic # 8 Polarization: -25.16 SS G_CDS: 0.17 Total: -24.98 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -36.35 -9.61 -45.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110443607.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.375 kcal (2) G-P(sol) polarization free energy of solvation -36.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.961 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds