Wall clock time and date at job start Wed Apr 1 2020 05:32:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.35843 * 126.13762 * 2 1 4 4 N 1.30175 * 109.00528 * 180.02562 * 3 2 1 5 5 C 1.35754 * 108.86464 * 359.97438 * 4 3 2 6 6 C 1.47331 * 126.23457 * 179.97438 * 5 4 3 7 7 O 1.21629 * 119.99752 * 180.02562 * 6 5 4 8 8 N 1.34775 * 119.99840 * 0.02562 * 6 5 4 9 9 C 1.46498 * 119.99900 * 179.97438 * 8 6 5 10 10 H 1.09008 * 110.66665 * 32.05277 * 9 8 6 11 11 C 1.54830 * 110.61648 * 269.10180 * 9 8 6 12 12 C 1.55846 * 103.51899 * 241.49065 * 11 9 8 13 13 H 1.09003 * 116.15124 * 159.22385 * 12 11 9 14 14 C 1.55847 * 105.03201 * 288.27042 * 12 11 9 15 15 C 1.54830 * 103.51829 * 71.72907 * 14 12 11 16 16 C 1.55848 * 110.61235 * 155.00157 * 9 8 6 17 17 H 1.09008 * 116.14713 * 319.28052 * 16 9 8 18 18 N 1.50642 * 101.02655 * 85.51542 * 16 9 8 19 19 C 1.46904 * 110.99756 * 170.23770 * 18 16 9 20 20 C 1.50700 * 109.47124 * 170.00278 * 19 18 16 21 21 O 1.21292 * 119.99931 * 359.97438 * 20 19 18 22 22 N 1.34774 * 119.99956 * 180.02562 * 20 19 18 23 23 C 1.37104 * 119.99857 * 179.97438 * 22 20 19 24 24 H 1.07995 * 120.00058 * 0.27796 * 23 22 20 25 25 C 1.38955 * 119.99721 * 179.97438 * 23 22 20 26 26 N 1.31411 * 120.00276 * 0.02562 * 25 23 22 27 27 Si 1.86803 * 119.99625 * 180.02562 * 25 23 22 28 28 H 1.48500 * 109.46986 * 90.00449 * 27 25 23 29 29 H 1.48496 * 109.47029 * 210.00465 * 27 25 23 30 30 H 1.48499 * 109.47352 * 330.00295 * 27 25 23 31 31 C 1.35378 * 126.13344 * 180.29595 * 2 1 3 32 32 H 1.09000 * 109.47438 * 89.97348 * 1 2 3 33 33 H 1.09003 * 109.47513 * 209.97314 * 1 2 3 34 34 H 1.09005 * 109.47136 * 329.97403 * 1 2 3 35 35 H 1.08005 * 125.49555 * 0.03656 * 3 2 1 36 36 H 0.97003 * 120.00053 * 0.02562 * 8 6 5 37 37 H 1.09001 * 110.61696 * 122.97977 * 11 9 8 38 38 H 1.09006 * 110.61525 * 0.02562 * 11 9 8 39 39 H 1.09002 * 110.61035 * 313.21561 * 14 12 11 40 40 H 1.09004 * 110.61153 * 190.23553 * 14 12 11 41 41 H 1.09005 * 110.61187 * 241.48897 * 15 14 12 42 42 H 1.08999 * 110.74786 * 118.56987 * 15 14 12 43 43 H 1.08997 * 109.47232 * 49.99879 * 19 18 16 44 44 H 1.09002 * 109.47005 * 290.00377 * 19 18 16 45 45 H 0.96999 * 120.00050 * 0.02562 * 22 20 19 46 46 H 0.97000 * 119.99719 * 179.97438 * 26 25 23 47 47 H 1.08005 * 126.56427 * 359.97438 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2661 1.0971 0.0000 4 7 3.5100 0.7136 -0.0006 5 6 3.5511 -0.6433 -0.0003 6 6 4.7652 -1.4779 -0.0013 7 8 4.6697 -2.6904 -0.0015 8 7 5.9817 -0.8976 -0.0021 9 6 7.1890 -1.7275 -0.0025 10 1 7.0161 -2.6579 -0.5435 11 6 7.6519 -2.0172 1.4463 12 6 9.0704 -1.3750 1.5109 13 1 9.4483 -1.1441 2.5069 14 6 9.9747 -2.3046 0.6467 15 6 9.5119 -2.0149 -0.8021 16 6 8.3897 -0.9488 -0.6197 17 1 8.1686 -0.3431 -1.4986 18 7 8.8969 -0.1995 0.5847 19 6 10.1877 0.4417 0.3006 20 6 10.5442 1.3749 1.4290 21 8 9.7963 1.4943 2.3764 22 7 11.6935 2.0774 1.3849 23 6 12.0176 2.9267 2.4112 24 1 11.3540 3.0294 3.2571 25 6 13.2028 3.6506 2.3660 26 7 14.0128 3.5216 1.3393 27 14 13.6446 4.8073 3.7647 28 1 14.4250 4.0689 4.7899 29 1 14.4586 5.9323 3.2383 30 1 12.4015 5.3403 4.3778 31 6 2.2632 -1.0934 -0.0056 32 1 -0.3634 0.0005 -1.0276 33 1 -0.3634 -0.8902 0.5134 34 1 -0.3634 0.8898 0.5143 35 1 1.9257 2.1221 0.0006 36 1 6.0578 0.0694 -0.0016 37 1 7.7085 -3.0912 1.6236 38 1 6.9828 -1.5438 2.1649 39 1 9.8047 -3.3506 0.9021 40 1 11.0254 -2.0435 0.7734 41 1 9.1124 -2.9173 -1.2650 42 1 10.3318 -1.6110 -1.3959 43 1 10.1161 1.0063 -0.6290 44 1 10.9592 -0.3221 0.2032 45 1 12.2910 1.9827 0.6267 46 1 14.8400 4.0272 1.3076 47 1 1.9420 -2.1245 -0.0106 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001110443607.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:32:55 Heat of formation + Delta-G solvation = -2.098459 kcal Electronic energy + Delta-G solvation = -30315.906968 eV Core-core repulsion = 26113.428849 eV Total energy + Delta-G solvation = -4202.478119 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -43.09663 -42.11718 -40.11220 -39.53000 -35.95386 -35.49117 -34.95051 -33.29046 -32.47463 -31.01183 -30.69890 -29.97690 -28.24784 -27.73388 -25.92915 -24.56509 -22.73498 -22.05612 -21.74907 -21.01863 -20.73042 -20.48047 -19.77352 -18.84767 -17.79786 -17.52070 -17.25539 -16.84062 -16.67307 -16.50075 -16.27741 -15.75206 -15.57756 -15.38712 -15.20610 -14.93512 -14.78268 -14.49656 -14.18633 -13.79743 -13.68690 -13.49607 -13.43003 -13.33670 -13.08849 -12.95820 -12.70642 -12.48845 -12.38920 -12.17350 -12.11527 -12.08515 -11.80728 -11.46991 -11.43888 -11.28322 -10.92046 -10.70220 -10.33735 -10.07072 -9.97602 -9.58598 -9.39258 -8.44355 -5.92483 0.59604 1.38127 1.41025 1.47085 1.54070 1.77578 2.10583 2.29130 2.34875 2.56860 2.77394 3.22186 3.36109 3.40685 3.50947 3.70203 3.89971 3.92836 4.01835 4.09319 4.20167 4.23706 4.29686 4.33236 4.37381 4.42947 4.48482 4.50748 4.53875 4.58254 4.70899 4.77518 4.78373 5.00921 5.03560 5.08291 5.11320 5.21944 5.28920 5.42408 5.45618 5.54544 5.75070 5.88075 6.10606 6.13424 6.55848 6.64395 6.90595 7.16364 7.27823 7.60716 8.17919 8.73195 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.013337 B = 0.002352 C = 0.002082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2098.902516 B =11901.187867 C =13446.732576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.454 5.454 3 C 0.190 3.810 4 N -0.503 5.503 5 C -0.104 4.104 6 C 0.599 3.401 7 O -0.582 6.582 8 N -0.698 5.698 9 C 0.158 3.842 10 H 0.104 0.896 11 C -0.115 4.115 12 C 0.047 3.953 13 H 0.084 0.916 14 C -0.151 4.151 15 C -0.141 4.141 16 C 0.041 3.959 17 H 0.131 0.869 18 N -0.491 5.491 19 C 0.040 3.960 20 C 0.444 3.556 21 O -0.618 6.618 22 N -0.577 5.577 23 C -0.330 4.330 24 H 0.075 0.925 25 C -0.015 4.015 26 N -0.921 5.921 27 Si 0.991 3.009 28 H -0.271 1.271 29 H -0.270 1.270 30 H -0.275 1.275 31 C 0.041 3.959 32 H 0.096 0.904 33 H 0.101 0.899 34 H 0.114 0.886 35 H 0.247 0.753 36 H 0.411 0.589 37 H 0.089 0.911 38 H 0.050 0.950 39 H 0.092 0.908 40 H 0.063 0.937 41 H 0.096 0.904 42 H 0.083 0.917 43 H 0.105 0.895 44 H 0.082 0.918 45 H 0.395 0.605 46 H 0.277 0.723 47 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.964 -10.860 -9.094 27.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.134 5.134 3 C -0.094 4.094 4 N -0.222 5.222 5 C -0.232 4.232 6 C 0.387 3.613 7 O -0.463 6.463 8 N -0.346 5.346 9 C 0.053 3.947 10 H 0.122 0.878 11 C -0.154 4.154 12 C -0.061 4.061 13 H 0.102 0.898 14 C -0.190 4.190 15 C -0.180 4.180 16 C -0.068 4.068 17 H 0.149 0.851 18 N -0.214 5.214 19 C -0.092 4.092 20 C 0.231 3.769 21 O -0.503 6.503 22 N -0.215 5.215 23 C -0.459 4.459 24 H 0.093 0.907 25 C -0.214 4.214 26 N -0.562 5.562 27 Si 0.815 3.185 28 H -0.197 1.197 29 H -0.194 1.194 30 H -0.200 1.200 31 C -0.101 4.101 32 H 0.115 0.885 33 H 0.120 0.880 34 H 0.132 0.868 35 H 0.263 0.737 36 H 0.247 0.753 37 H 0.108 0.892 38 H 0.069 0.931 39 H 0.110 0.890 40 H 0.082 0.918 41 H 0.114 0.886 42 H 0.102 0.898 43 H 0.123 0.877 44 H 0.100 0.900 45 H 0.229 0.771 46 H 0.086 0.914 47 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -24.159 -10.510 -8.292 27.620 hybrid contribution 0.835 0.180 0.302 0.906 sum -23.323 -10.330 -7.990 26.731 Atomic orbital electron populations 1.22537 0.72664 1.06964 1.05601 1.45646 1.09961 1.05689 1.52115 1.25939 0.84400 0.95243 1.03827 1.70582 1.22017 1.10455 1.19181 1.20579 0.93650 0.91053 1.17909 1.17235 0.82770 0.86238 0.75020 1.90726 1.87459 1.14398 1.53729 1.45805 1.04622 1.11225 1.72961 1.22075 0.82747 0.94028 0.95862 0.87804 1.22980 0.95016 1.00589 0.96781 1.24331 0.95901 0.89084 0.96819 0.89797 1.23294 0.99499 1.00923 0.95235 1.23213 0.98400 0.99880 0.96472 1.24863 0.94285 0.93889 0.93720 0.85127 1.67389 1.22857 1.22873 1.08241 1.21952 0.93222 0.97327 0.96688 1.20845 0.82045 0.84441 0.89531 1.90491 1.52101 1.69734 1.38021 1.41925 1.19451 1.38807 1.21312 1.19611 1.05179 1.20257 1.00899 0.90678 1.26010 0.95256 0.99617 1.00508 1.69672 1.12484 1.43120 1.30932 0.84953 0.78116 0.77716 0.77694 1.19671 1.19424 1.19986 1.22828 0.89655 0.94464 1.03121 0.88546 0.88037 0.86783 0.73671 0.75323 0.89210 0.93126 0.88993 0.91833 0.88587 0.89789 0.87688 0.90044 0.77092 0.91384 0.77982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.08 11.15 127.77 1.42 1.51 16 2 N -0.45 -5.56 3.13 -551.84 -1.72 -7.28 16 3 C 0.19 3.02 12.55 180.10 2.26 5.28 16 4 N -0.50 -12.85 11.01 -188.81 -2.08 -14.93 16 5 C -0.10 -2.74 6.98 40.51 0.28 -2.46 16 6 C 0.60 18.13 7.81 86.64 0.68 18.80 16 7 O -0.58 -19.57 16.53 -4.12 -0.07 -19.63 16 8 N -0.70 -20.25 5.07 -438.27 -2.22 -22.48 16 9 C 0.16 4.18 2.80 46.60 0.13 4.31 16 10 H 0.10 2.61 7.23 -2.38 -0.02 2.59 16 11 C -0.11 -3.32 6.22 32.20 0.20 -3.12 16 12 C 0.05 1.51 4.57 46.15 0.21 1.73 16 13 H 0.08 3.27 7.96 -2.39 -0.02 3.25 16 14 C -0.15 -3.65 5.63 32.20 0.18 -3.47 16 15 C -0.14 -2.87 5.63 32.20 0.18 -2.68 16 16 C 0.04 1.02 4.51 46.15 0.21 1.23 16 17 H 0.13 2.92 8.14 -2.38 -0.02 2.90 16 18 N -0.49 -16.54 5.09 -808.84 -4.12 -20.66 16 19 C 0.04 1.43 4.83 85.56 0.41 1.84 16 20 C 0.44 22.04 7.72 87.66 0.68 22.71 16 21 O -0.62 -35.96 15.58 -3.07 -0.05 -36.01 16 22 N -0.58 -30.55 5.29 -306.98 -1.62 -32.18 16 23 C -0.33 -19.29 9.68 84.04 0.81 -18.48 16 24 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 25 C -0.01 -0.79 5.50 84.93 0.47 -0.33 16 26 N -0.92 -50.63 13.05 21.66 0.28 -50.35 16 27 Si 0.99 44.12 29.55 68.60 2.03 46.15 16 28 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 29 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 30 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 31 C 0.04 0.76 11.26 83.72 0.94 1.70 16 32 H 0.10 -0.10 8.14 -2.39 -0.02 -0.12 16 33 H 0.10 -0.07 8.14 -2.39 -0.02 -0.09 16 34 H 0.11 -0.30 8.14 -2.38 -0.02 -0.32 16 35 H 0.25 1.70 8.06 -2.91 -0.02 1.68 16 36 H 0.41 12.66 8.37 -92.71 -0.78 11.88 16 37 H 0.09 2.25 7.82 -2.39 -0.02 2.23 16 38 H 0.05 1.71 7.98 -2.38 -0.02 1.69 16 39 H 0.09 1.87 7.82 -2.39 -0.02 1.85 16 40 H 0.06 1.64 6.95 -2.38 -0.02 1.62 16 41 H 0.10 1.57 7.82 -2.38 -0.02 1.55 16 42 H 0.08 1.58 7.64 -2.39 -0.02 1.56 16 43 H 0.11 3.35 8.09 -2.39 -0.02 3.33 16 44 H 0.08 2.60 5.10 -2.39 -0.01 2.59 16 45 H 0.40 19.81 7.90 -92.71 -0.73 19.08 16 46 H 0.28 14.23 8.31 -92.71 -0.77 13.46 16 47 H 0.20 2.91 8.06 -2.91 -0.02 2.88 16 Total: -1.00 -82.73 387.25 -0.98 -83.71 By element: Atomic # 1 Polarization: 45.56 SS G_CDS: -0.48 Total: 45.08 kcal Atomic # 6 Polarization: 19.50 SS G_CDS: 9.07 Total: 28.57 kcal Atomic # 7 Polarization: -136.39 SS G_CDS: -11.48 Total: -147.87 kcal Atomic # 8 Polarization: -55.52 SS G_CDS: -0.12 Total: -55.64 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -82.73 -0.98 -83.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110443607.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.607 kcal (2) G-P(sol) polarization free energy of solvation -82.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds