Wall clock time and date at job start Wed Apr 1 2020 05:37:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34492 * 126.47229 * 2 1 4 4 N 1.30861 * 109.16074 * 179.71404 * 3 2 1 5 5 C 1.33317 * 109.68793 * 0.41258 * 4 3 2 6 6 C 1.36664 * 107.78252 * 359.59083 * 5 4 3 7 7 C 1.46765 * 126.84571 * 180.24027 * 6 5 4 8 8 O 1.21682 * 120.00136 * 174.46087 * 7 6 5 9 9 N 1.34781 * 119.99890 * 354.46093 * 7 6 5 10 10 C 1.46494 * 119.99991 * 185.15180 * 9 7 6 11 11 H 1.08997 * 110.54628 * 34.30507 * 10 9 7 12 12 C 1.54833 * 110.61779 * 271.43474 * 10 9 7 13 13 C 1.56213 * 103.34962 * 241.52732 * 12 10 9 14 14 H 1.09000 * 116.14418 * 159.16271 * 13 12 10 15 15 C 1.55841 * 104.97390 * 288.15999 * 13 12 10 16 16 C 1.56676 * 103.67404 * 71.55047 * 15 13 12 17 17 C 1.55841 * 102.66985 * 0.33903 * 16 15 13 18 18 H 1.09003 * 115.58370 * 159.16122 * 17 16 15 19 19 N 1.50647 * 101.73312 * 32.74587 * 17 16 15 20 20 C 1.46899 * 111.00331 * 189.56874 * 19 17 16 21 21 C 1.50700 * 109.47350 * 190.00008 * 20 19 17 22 22 O 1.21295 * 120.00061 * 0.02562 * 21 20 19 23 23 N 1.34771 * 120.00015 * 180.02562 * 21 20 19 24 24 C 1.37104 * 120.00172 * 179.97438 * 23 21 20 25 25 H 1.07997 * 119.99463 * 0.02562 * 24 23 21 26 26 C 1.38948 * 120.00251 * 179.97438 * 24 23 21 27 27 N 1.31411 * 120.00190 * 0.02562 * 26 24 23 28 28 Si 1.86802 * 120.00022 * 180.02562 * 26 24 23 29 29 H 1.48494 * 109.47076 * 0.02562 * 28 26 24 30 30 H 1.48499 * 109.46804 * 120.00379 * 28 26 24 31 31 H 1.48505 * 109.46783 * 240.00192 * 28 26 24 32 32 H 1.09005 * 109.47386 * 274.24865 * 1 2 3 33 33 H 1.09007 * 109.46856 * 34.24559 * 1 2 3 34 34 H 1.09002 * 109.47291 * 154.24214 * 1 2 3 35 35 H 1.07995 * 125.42408 * 359.96279 * 3 2 1 36 36 H 1.07997 * 126.10794 * 179.85896 * 5 4 3 37 37 H 0.96997 * 119.99503 * 5.15582 * 9 7 6 38 38 H 1.09003 * 110.61301 * 0.02562 * 12 10 9 39 39 H 1.09005 * 110.61373 * 122.97787 * 12 10 9 40 40 H 1.08997 * 110.61635 * 190.29073 * 15 13 12 41 41 H 1.09003 * 110.61335 * 313.27819 * 15 13 12 42 42 H 1.09004 * 111.43078 * 241.92499 * 16 15 13 43 43 H 1.09000 * 110.60478 * 118.38009 * 16 15 13 44 44 H 1.08997 * 109.47400 * 309.99990 * 20 19 17 45 45 H 1.09003 * 109.47081 * 69.99908 * 20 19 17 46 46 H 0.97005 * 120.00193 * 359.97438 * 23 21 20 47 47 H 0.96999 * 120.00700 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2644 1.0815 0.0000 4 7 3.5138 0.6921 0.0062 5 6 3.5691 -0.6399 0.0013 6 6 2.2862 -1.1109 0.0009 7 6 1.8648 -2.5168 0.0011 8 8 0.6854 -2.7984 0.1024 9 7 2.7843 -3.4959 -0.1108 10 6 2.3569 -4.8925 -0.2242 11 1 1.4240 -4.9629 -0.7834 12 6 2.2016 -5.5307 1.1779 13 6 3.2448 -6.6933 1.1627 14 1 3.5689 -7.0606 2.1364 15 6 2.6398 -7.7648 0.2065 16 6 2.7854 -7.1186 -1.2134 17 6 3.4673 -5.7530 -0.8991 18 1 3.9849 -5.2820 -1.7348 19 7 4.3225 -6.1041 0.2903 20 6 4.8943 -4.8973 0.9023 21 6 5.9287 -5.2939 1.9239 22 8 6.1666 -6.4667 2.1223 23 7 6.5894 -4.3457 2.6171 24 6 7.5301 -4.7065 3.5470 25 1 7.7419 -5.7507 3.7236 26 6 8.2117 -3.7288 4.2613 27 7 7.9543 -2.4583 4.0460 28 14 9.4939 -4.2205 5.5276 29 1 9.5960 -5.7010 5.5796 30 1 10.8100 -3.6471 5.1478 31 1 9.0954 -3.7041 6.8618 32 1 -0.3634 0.0761 1.0249 33 1 -0.3633 0.8496 -0.5784 34 1 -0.3634 -0.9256 -0.4466 35 1 1.9289 2.1080 -0.0006 36 1 4.4673 -1.2396 0.0023 37 1 3.7289 -3.2757 -0.1162 38 1 2.4421 -4.8077 1.9574 39 1 1.1923 -5.9198 1.3128 40 1 3.2040 -8.6954 0.2667 41 1 1.5886 -7.9364 0.4385 42 1 1.8136 -6.9634 -1.6820 43 1 3.4258 -7.7300 -1.8492 44 1 5.3616 -4.2852 0.1310 45 1 4.1030 -4.3270 1.3890 46 1 6.3994 -3.4078 2.4582 47 1 8.4304 -1.7757 4.5444 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001110772612.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:37:40 Heat of formation + Delta-G solvation = 36.025303 kcal Electronic energy + Delta-G solvation = -31594.449738 eV Core-core repulsion = 27393.624789 eV Total energy + Delta-G solvation = -4200.824949 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.38864 -41.26129 -38.92518 -37.79394 -34.80014 -33.95323 -33.89084 -31.96357 -31.09333 -30.66679 -29.65213 -28.34684 -27.31594 -26.48925 -24.21798 -23.69899 -21.99601 -21.38035 -20.72466 -20.28287 -19.74447 -18.83298 -18.09076 -17.76810 -16.66662 -16.60694 -16.18078 -15.94400 -15.50919 -15.04148 -14.94458 -14.47086 -14.41235 -14.23209 -14.09502 -13.78514 -13.60449 -13.31711 -13.14986 -12.98912 -12.88151 -12.37607 -12.15700 -12.01644 -11.86204 -11.46487 -11.43394 -11.37460 -11.11441 -10.92532 -10.70290 -10.61468 -10.32354 -10.28218 -10.19669 -9.95140 -9.90277 -9.48765 -9.28628 -8.77773 -8.61752 -8.07635 -7.93155 -6.38440 -3.79429 1.12393 2.25674 2.67773 3.10124 3.18356 3.19337 3.29069 3.35932 3.78113 3.93060 4.21407 4.33812 4.44549 4.53163 4.57924 4.62584 4.65968 4.87591 4.91980 4.99405 5.09203 5.16204 5.19695 5.22953 5.28035 5.29860 5.35951 5.45252 5.50768 5.61884 5.68574 5.77878 5.88221 5.92676 6.00553 6.12629 6.14893 6.25686 6.28908 6.34338 6.40375 6.78355 6.81738 7.11196 7.24376 7.58283 7.71467 7.97329 8.09041 8.64395 9.21448 9.57019 10.08908 10.79143 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.007993 B = 0.004065 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3502.244696 B = 6886.187399 C = 9845.773627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.429 5.429 3 C 0.205 3.795 4 N -0.492 5.492 5 C 0.046 3.954 6 C -0.093 4.093 7 C 0.597 3.403 8 O -0.548 6.548 9 N -0.712 5.712 10 C 0.116 3.884 11 H 0.098 0.902 12 C -0.164 4.164 13 C 0.057 3.943 14 H 0.122 0.878 15 C -0.115 4.115 16 C -0.108 4.108 17 C 0.034 3.966 18 H 0.118 0.882 19 N -0.459 5.459 20 C 0.011 3.989 21 C 0.447 3.553 22 O -0.575 6.575 23 N -0.565 5.565 24 C -0.298 4.298 25 H 0.103 0.897 26 C 0.023 3.977 27 N -0.900 5.900 28 Si 0.927 3.073 29 H -0.268 1.268 30 H -0.281 1.281 31 H -0.282 1.282 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.103 0.897 35 H 0.213 0.787 36 H 0.180 0.820 37 H 0.405 0.595 38 H 0.074 0.926 39 H 0.079 0.921 40 H 0.074 0.926 41 H 0.067 0.933 42 H 0.070 0.930 43 H 0.077 0.923 44 H 0.083 0.917 45 H 0.067 0.933 46 H 0.391 0.609 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.722 3.499 -11.799 20.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.110 5.110 3 C -0.077 4.077 4 N -0.209 5.209 5 C -0.108 4.108 6 C -0.209 4.209 7 C 0.385 3.615 8 O -0.427 6.427 9 N -0.365 5.365 10 C 0.011 3.989 11 H 0.116 0.884 12 C -0.204 4.204 13 C -0.051 4.051 14 H 0.140 0.860 15 C -0.153 4.153 16 C -0.147 4.147 17 C -0.076 4.076 18 H 0.135 0.865 19 N -0.181 5.181 20 C -0.121 4.121 21 C 0.232 3.768 22 O -0.458 6.458 23 N -0.202 5.202 24 C -0.428 4.428 25 H 0.121 0.879 26 C -0.179 4.179 27 N -0.541 5.541 28 Si 0.754 3.246 29 H -0.193 1.193 30 H -0.207 1.207 31 H -0.208 1.208 32 H 0.099 0.901 33 H 0.105 0.895 34 H 0.122 0.878 35 H 0.229 0.771 36 H 0.197 0.803 37 H 0.244 0.756 38 H 0.093 0.907 39 H 0.098 0.902 40 H 0.093 0.907 41 H 0.085 0.915 42 H 0.089 0.911 43 H 0.096 0.904 44 H 0.101 0.899 45 H 0.084 0.916 46 H 0.224 0.776 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -16.306 2.804 -11.631 20.224 hybrid contribution -0.353 0.970 0.893 1.365 sum -16.659 3.775 -10.738 20.176 Atomic orbital electron populations 1.22275 0.75432 1.05614 1.04158 1.45244 1.08210 1.05775 1.51736 1.25196 0.85607 0.93616 1.03306 1.70195 1.18845 1.12140 1.19738 1.22739 0.95219 0.91444 1.01439 1.20741 0.91633 0.88815 1.19717 1.16802 0.85533 0.83205 0.75986 1.90764 1.17103 1.84077 1.50738 1.46121 1.09945 1.06208 1.74260 1.22935 0.99605 0.79199 0.97197 0.88417 1.23833 1.00852 0.99189 0.96551 1.24541 0.88625 0.94043 0.97915 0.86003 1.22923 0.99956 0.98518 0.93906 1.22818 0.99752 0.94643 0.97465 1.24848 0.91777 0.95407 0.95537 0.86459 1.67463 1.24497 1.22344 1.03812 1.22393 0.98261 0.93240 0.98215 1.19617 0.85433 0.86733 0.85066 1.90524 1.68275 1.17972 1.69043 1.41855 1.35308 1.07980 1.35085 1.19721 1.14162 0.94815 1.14101 0.87936 1.25237 0.98932 0.94786 0.98910 1.69612 1.42726 0.99429 1.42351 0.85836 0.79966 0.78916 0.79845 1.19258 1.20747 1.20830 0.90117 0.89544 0.87805 0.77098 0.80335 0.75644 0.90709 0.90242 0.90698 0.91476 0.91133 0.90448 0.89899 0.91560 0.77645 0.91926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.51 10.75 59.85 0.64 1.15 16 2 N -0.43 -4.58 3.17 -121.97 -0.39 -4.97 16 3 C 0.20 2.10 12.52 -90.57 -1.13 0.97 16 4 N -0.49 -6.65 11.20 -14.43 -0.16 -6.81 16 5 C 0.05 0.60 11.37 -17.48 -0.20 0.40 16 6 C -0.09 -1.17 6.91 -82.14 -0.57 -1.74 16 7 C 0.60 7.90 7.78 -12.81 -0.10 7.80 16 8 O -0.55 -8.26 14.59 5.21 0.08 -8.18 16 9 N -0.71 -8.41 4.01 -52.68 -0.21 -8.62 16 10 C 0.12 1.36 2.51 -65.45 -0.16 1.19 16 11 H 0.10 1.13 7.35 -51.93 -0.38 0.75 16 12 C -0.16 -2.14 5.51 -24.04 -0.13 -2.27 16 13 C 0.06 0.83 4.57 -62.36 -0.29 0.54 16 14 H 0.12 2.07 7.96 -51.93 -0.41 1.66 16 15 C -0.12 -1.32 6.48 -23.23 -0.15 -1.47 16 16 C -0.11 -1.10 6.57 -23.23 -0.15 -1.25 16 17 C 0.03 0.39 4.57 -62.56 -0.29 0.10 16 18 H 0.12 1.20 8.14 -51.93 -0.42 0.78 16 19 N -0.46 -7.11 5.10 -206.78 -1.05 -8.16 16 20 C 0.01 0.18 3.78 -4.98 -0.02 0.17 16 21 C 0.45 10.31 7.72 -10.99 -0.08 10.23 16 22 O -0.57 -15.40 15.58 5.54 0.09 -15.32 16 23 N -0.57 -14.08 5.29 -10.96 -0.06 -14.13 16 24 C -0.30 -8.27 9.68 -14.93 -0.14 -8.42 16 25 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 26 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 27 N -0.90 -24.48 13.05 55.50 0.72 -23.76 16 28 Si 0.93 21.14 29.55 -169.99 -5.02 16.11 16 29 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 30 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 31 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 32 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.10 0.95 6.38 -51.93 -0.33 0.62 16 35 H 0.21 1.21 8.06 -52.49 -0.42 0.79 16 36 H 0.18 2.02 7.47 -52.49 -0.39 1.63 16 37 H 0.41 4.51 4.90 -40.82 -0.20 4.31 16 38 H 0.07 1.12 6.82 -51.93 -0.35 0.76 16 39 H 0.08 0.95 7.82 -51.93 -0.41 0.54 16 40 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.07 0.65 7.82 -51.93 -0.41 0.25 16 42 H 0.07 0.59 7.81 -51.93 -0.41 0.18 16 43 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 44 H 0.08 1.21 7.36 -51.93 -0.38 0.83 16 45 H 0.07 1.05 4.17 -51.93 -0.22 0.83 16 46 H 0.39 9.30 7.90 -40.82 -0.32 8.97 16 47 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 377.09 15.07 5.68 5.68 Total: -1.00 -35.26 377.09 -9.46 -44.72 By element: Atomic # 1 Polarization: 21.76 SS G_CDS: -6.26 Total: 15.50 kcal Atomic # 6 Polarization: 10.80 SS G_CDS: -2.87 Total: 7.93 kcal Atomic # 7 Polarization: -65.30 SS G_CDS: -1.15 Total: -66.45 kcal Atomic # 8 Polarization: -23.66 SS G_CDS: 0.16 Total: -23.50 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.26 -9.46 -44.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110772612.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.747 kcal (2) G-P(sol) polarization free energy of solvation -35.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds