Wall clock time and date at job start Wed Apr 1 2020 05:37:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34492 * 126.47229 * 2 1 4 4 N 1.30861 * 109.16074 * 179.71404 * 3 2 1 5 5 C 1.33317 * 109.68793 * 0.41258 * 4 3 2 6 6 C 1.36664 * 107.78252 * 359.59083 * 5 4 3 7 7 C 1.46765 * 126.84571 * 180.24027 * 6 5 4 8 8 O 1.21682 * 120.00136 * 174.46087 * 7 6 5 9 9 N 1.34781 * 119.99890 * 354.46093 * 7 6 5 10 10 C 1.46494 * 119.99991 * 185.15180 * 9 7 6 11 11 H 1.08997 * 110.54628 * 34.30507 * 10 9 7 12 12 C 1.54833 * 110.61779 * 271.43474 * 10 9 7 13 13 C 1.56213 * 103.34962 * 241.52732 * 12 10 9 14 14 H 1.09000 * 116.14418 * 159.16271 * 13 12 10 15 15 C 1.55841 * 104.97390 * 288.15999 * 13 12 10 16 16 C 1.56676 * 103.67404 * 71.55047 * 15 13 12 17 17 C 1.55841 * 102.66985 * 0.33903 * 16 15 13 18 18 H 1.09003 * 115.58370 * 159.16122 * 17 16 15 19 19 N 1.50647 * 101.73312 * 32.74587 * 17 16 15 20 20 C 1.46899 * 111.00331 * 189.56874 * 19 17 16 21 21 C 1.50700 * 109.47350 * 190.00008 * 20 19 17 22 22 O 1.21295 * 120.00061 * 0.02562 * 21 20 19 23 23 N 1.34771 * 120.00015 * 180.02562 * 21 20 19 24 24 C 1.37104 * 120.00172 * 179.97438 * 23 21 20 25 25 H 1.07997 * 119.99463 * 0.02562 * 24 23 21 26 26 C 1.38948 * 120.00251 * 179.97438 * 24 23 21 27 27 N 1.31411 * 120.00190 * 0.02562 * 26 24 23 28 28 Si 1.86802 * 120.00022 * 180.02562 * 26 24 23 29 29 H 1.48494 * 109.47076 * 0.02562 * 28 26 24 30 30 H 1.48499 * 109.46804 * 120.00379 * 28 26 24 31 31 H 1.48505 * 109.46783 * 240.00192 * 28 26 24 32 32 H 1.09005 * 109.47386 * 274.24865 * 1 2 3 33 33 H 1.09007 * 109.46856 * 34.24559 * 1 2 3 34 34 H 1.09002 * 109.47291 * 154.24214 * 1 2 3 35 35 H 1.07995 * 125.42408 * 359.96279 * 3 2 1 36 36 H 1.07997 * 126.10794 * 179.85896 * 5 4 3 37 37 H 0.96997 * 119.99503 * 5.15582 * 9 7 6 38 38 H 1.09003 * 110.61301 * 0.02562 * 12 10 9 39 39 H 1.09005 * 110.61373 * 122.97787 * 12 10 9 40 40 H 1.08997 * 110.61635 * 190.29073 * 15 13 12 41 41 H 1.09003 * 110.61335 * 313.27819 * 15 13 12 42 42 H 1.09004 * 111.43078 * 241.92499 * 16 15 13 43 43 H 1.09000 * 110.60478 * 118.38009 * 16 15 13 44 44 H 1.08997 * 109.47400 * 309.99990 * 20 19 17 45 45 H 1.09003 * 109.47081 * 69.99908 * 20 19 17 46 46 H 0.97005 * 120.00193 * 359.97438 * 23 21 20 47 47 H 0.96999 * 120.00700 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2644 1.0815 0.0000 4 7 3.5138 0.6921 0.0062 5 6 3.5691 -0.6399 0.0013 6 6 2.2862 -1.1109 0.0009 7 6 1.8648 -2.5168 0.0011 8 8 0.6854 -2.7984 0.1024 9 7 2.7843 -3.4959 -0.1108 10 6 2.3569 -4.8925 -0.2242 11 1 1.4240 -4.9629 -0.7834 12 6 2.2016 -5.5307 1.1779 13 6 3.2448 -6.6933 1.1627 14 1 3.5689 -7.0606 2.1364 15 6 2.6398 -7.7648 0.2065 16 6 2.7854 -7.1186 -1.2134 17 6 3.4673 -5.7530 -0.8991 18 1 3.9849 -5.2820 -1.7348 19 7 4.3225 -6.1041 0.2903 20 6 4.8943 -4.8973 0.9023 21 6 5.9287 -5.2939 1.9239 22 8 6.1666 -6.4667 2.1223 23 7 6.5894 -4.3457 2.6171 24 6 7.5301 -4.7065 3.5470 25 1 7.7419 -5.7507 3.7236 26 6 8.2117 -3.7288 4.2613 27 7 7.9543 -2.4583 4.0460 28 14 9.4939 -4.2205 5.5276 29 1 9.5960 -5.7010 5.5796 30 1 10.8100 -3.6471 5.1478 31 1 9.0954 -3.7041 6.8618 32 1 -0.3634 0.0761 1.0249 33 1 -0.3633 0.8496 -0.5784 34 1 -0.3634 -0.9256 -0.4466 35 1 1.9289 2.1080 -0.0006 36 1 4.4673 -1.2396 0.0023 37 1 3.7289 -3.2757 -0.1162 38 1 2.4421 -4.8077 1.9574 39 1 1.1923 -5.9198 1.3128 40 1 3.2040 -8.6954 0.2667 41 1 1.5886 -7.9364 0.4385 42 1 1.8136 -6.9634 -1.6820 43 1 3.4258 -7.7300 -1.8492 44 1 5.3616 -4.2852 0.1310 45 1 4.1030 -4.3270 1.3890 46 1 6.3994 -3.4078 2.4582 47 1 8.4304 -1.7757 4.5444 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001110772612.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:37:39 Heat of formation + Delta-G solvation = 10.173081 kcal Electronic energy + Delta-G solvation = -31595.570774 eV Core-core repulsion = 27393.624789 eV Total energy + Delta-G solvation = -4201.945986 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -43.25066 -42.33369 -40.06113 -39.57791 -35.95228 -35.70651 -34.79967 -33.44272 -32.91574 -31.59612 -30.66134 -29.31949 -28.07368 -27.99713 -25.96821 -24.66797 -22.91170 -22.23028 -21.74001 -21.70630 -20.68992 -20.42335 -19.75372 -18.95316 -17.83491 -17.61902 -17.23116 -17.05333 -16.81261 -16.48509 -16.24902 -15.90385 -15.65442 -15.40935 -15.26180 -15.00892 -14.73020 -14.42008 -14.35043 -13.85910 -13.78156 -13.61440 -13.55077 -13.26779 -13.09941 -12.97520 -12.83134 -12.56753 -12.38649 -12.33178 -12.11608 -12.00051 -11.75324 -11.55241 -11.48433 -11.21663 -10.91322 -10.75343 -10.38679 -10.25121 -9.98568 -9.66876 -9.47677 -8.44739 -5.93269 0.22081 1.36304 1.41328 1.45216 1.55271 1.79470 2.07285 2.22391 2.23906 2.28645 2.68018 3.20375 3.27342 3.46382 3.61994 3.63993 3.75866 3.78976 3.93969 4.03526 4.05595 4.12203 4.17702 4.27143 4.34096 4.36312 4.40755 4.46586 4.48137 4.53589 4.68036 4.70853 4.74318 4.94161 5.05320 5.08621 5.12496 5.26803 5.30528 5.37715 5.42308 5.43492 5.71975 5.84398 6.07569 6.08422 6.26773 6.62445 6.84009 7.00335 7.15307 7.58706 8.14987 8.72476 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.007993 B = 0.004065 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3502.244696 B = 6886.187399 C = 9845.773627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.431 5.431 3 C 0.218 3.782 4 N -0.533 5.533 5 C 0.035 3.965 6 C -0.112 4.112 7 C 0.598 3.402 8 O -0.569 6.569 9 N -0.707 5.707 10 C 0.124 3.876 11 H 0.109 0.891 12 C -0.156 4.156 13 C 0.046 3.954 14 H 0.084 0.916 15 C -0.109 4.109 16 C -0.100 4.100 17 C 0.041 3.959 18 H 0.137 0.863 19 N -0.485 5.485 20 C 0.028 3.972 21 C 0.443 3.557 22 O -0.616 6.616 23 N -0.574 5.574 24 C -0.331 4.331 25 H 0.077 0.923 26 C -0.011 4.011 27 N -0.919 5.919 28 Si 0.989 3.011 29 H -0.274 1.274 30 H -0.270 1.270 31 H -0.272 1.272 32 H 0.085 0.915 33 H 0.124 0.876 34 H 0.086 0.914 35 H 0.256 0.744 36 H 0.184 0.816 37 H 0.408 0.592 38 H 0.049 0.951 39 H 0.092 0.908 40 H 0.064 0.936 41 H 0.088 0.912 42 H 0.099 0.901 43 H 0.082 0.918 44 H 0.109 0.891 45 H 0.077 0.923 46 H 0.395 0.605 47 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.115 4.668 -13.225 22.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.111 5.111 3 C -0.064 4.064 4 N -0.251 5.251 5 C -0.120 4.120 6 C -0.228 4.228 7 C 0.386 3.614 8 O -0.450 6.450 9 N -0.360 5.360 10 C 0.018 3.982 11 H 0.127 0.873 12 C -0.196 4.196 13 C -0.063 4.063 14 H 0.102 0.898 15 C -0.147 4.147 16 C -0.138 4.138 17 C -0.067 4.067 18 H 0.155 0.845 19 N -0.207 5.207 20 C -0.104 4.104 21 C 0.231 3.769 22 O -0.502 6.502 23 N -0.212 5.212 24 C -0.461 4.461 25 H 0.095 0.905 26 C -0.211 4.211 27 N -0.560 5.560 28 Si 0.813 3.187 29 H -0.199 1.199 30 H -0.195 1.195 31 H -0.198 1.198 32 H 0.104 0.896 33 H 0.143 0.857 34 H 0.105 0.895 35 H 0.271 0.729 36 H 0.201 0.799 37 H 0.247 0.753 38 H 0.068 0.932 39 H 0.111 0.889 40 H 0.083 0.917 41 H 0.107 0.893 42 H 0.117 0.883 43 H 0.101 0.899 44 H 0.127 0.873 45 H 0.094 0.906 46 H 0.228 0.772 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -17.719 3.983 -13.075 22.378 hybrid contribution 0.034 0.610 1.340 1.473 sum -17.686 4.593 -11.735 21.716 Atomic orbital electron populations 1.22465 0.73630 1.06427 1.05049 1.45496 1.09321 1.05240 1.51053 1.26032 0.84702 0.95040 1.00611 1.70182 1.20911 1.12386 1.21645 1.22928 0.95738 0.91755 1.01557 1.20735 0.92028 0.89133 1.20944 1.16903 0.85304 0.83622 0.75540 1.90748 1.17866 1.84427 1.51941 1.46080 1.09964 1.06172 1.73753 1.22905 1.00170 0.78906 0.96171 0.87274 1.23744 1.00945 0.98087 0.96819 1.24451 0.89005 0.95789 0.97049 0.89823 1.22902 1.00731 0.97022 0.94086 1.22860 1.01198 0.93306 0.96475 1.25005 0.90978 0.96452 0.94291 0.84533 1.67431 1.26155 1.21856 1.05297 1.22209 0.96718 0.94274 0.97189 1.20735 0.85372 0.85828 0.85005 1.90490 1.69592 1.19767 1.70310 1.41916 1.35506 1.08486 1.35299 1.19651 1.16204 0.94033 1.16183 0.90518 1.25976 1.00289 0.94645 1.00188 1.69675 1.43335 1.00003 1.42944 0.84927 0.77845 0.78195 0.77721 1.19853 1.19542 1.19781 0.89624 0.85745 0.89493 0.72869 0.79893 0.75312 0.93199 0.88906 0.91749 0.89318 0.88259 0.89900 0.87320 0.90585 0.77170 0.91411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.84 10.75 127.77 1.37 2.21 16 2 N -0.43 -8.44 3.17 -539.80 -1.71 -10.15 16 3 C 0.22 4.00 12.52 180.33 2.26 6.25 16 4 N -0.53 -13.88 11.20 -199.57 -2.24 -16.11 16 5 C 0.04 0.90 11.37 84.10 0.96 1.85 16 6 C -0.11 -2.74 6.91 40.01 0.28 -2.46 16 7 C 0.60 15.28 7.78 86.47 0.67 15.96 16 8 O -0.57 -16.58 14.59 -4.29 -0.06 -16.64 16 9 N -0.71 -15.86 4.01 -438.81 -1.76 -17.62 16 10 C 0.12 2.66 2.51 46.60 0.12 2.77 16 11 H 0.11 2.19 7.35 -2.39 -0.02 2.18 16 12 C -0.16 -3.97 5.51 32.34 0.18 -3.79 16 13 C 0.05 1.34 4.57 46.28 0.21 1.55 16 14 H 0.08 3.06 7.96 -2.39 -0.02 3.04 16 15 C -0.11 -2.36 6.48 32.86 0.21 -2.14 16 16 C -0.10 -1.73 6.57 32.86 0.22 -1.51 16 17 C 0.04 0.86 4.57 46.15 0.21 1.07 16 18 H 0.14 2.36 8.14 -2.39 -0.02 2.34 16 19 N -0.48 -14.83 5.10 -808.14 -4.12 -18.95 16 20 C 0.03 0.94 3.78 85.56 0.32 1.27 16 21 C 0.44 21.22 7.72 87.66 0.68 21.90 16 22 O -0.62 -34.56 15.58 -3.08 -0.05 -34.61 16 23 N -0.57 -29.64 5.29 -306.99 -1.62 -31.26 16 24 C -0.33 -19.03 9.68 84.04 0.81 -18.21 16 25 H 0.08 4.73 7.16 -2.91 -0.02 4.71 16 26 C -0.01 -0.61 5.50 84.93 0.47 -0.14 16 27 N -0.92 -50.20 13.05 21.66 0.28 -49.91 16 28 Si 0.99 43.69 29.55 68.60 2.03 45.72 16 29 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 30 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 31 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 32 H 0.09 1.03 8.14 -2.38 -0.02 1.01 16 33 H 0.12 0.62 8.14 -2.38 -0.02 0.60 16 34 H 0.09 1.47 6.38 -2.39 -0.02 1.46 16 35 H 0.26 1.96 8.06 -2.91 -0.02 1.94 16 36 H 0.18 4.17 7.47 -2.91 -0.02 4.14 16 37 H 0.41 8.66 4.90 -92.71 -0.45 8.20 16 38 H 0.05 1.51 6.82 -2.39 -0.02 1.50 16 39 H 0.09 2.09 7.82 -2.38 -0.02 2.07 16 40 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.09 1.52 7.82 -2.39 -0.02 1.50 16 42 H 0.10 1.21 7.81 -2.38 -0.02 1.19 16 43 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 44 H 0.11 3.07 7.36 -2.39 -0.02 3.05 16 45 H 0.08 2.43 4.17 -2.39 -0.01 2.42 16 46 H 0.39 19.35 7.90 -92.70 -0.73 18.62 16 47 H 0.28 14.19 8.31 -92.71 -0.77 13.42 16 Total: -1.00 -79.37 377.09 -0.44 -79.81 By element: Atomic # 1 Polarization: 43.32 SS G_CDS: -0.15 Total: 43.17 kcal Atomic # 6 Polarization: 17.61 SS G_CDS: 8.96 Total: 26.58 kcal Atomic # 7 Polarization: -132.85 SS G_CDS: -11.17 Total: -144.02 kcal Atomic # 8 Polarization: -51.14 SS G_CDS: -0.11 Total: -51.25 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Total: -79.37 -0.44 -79.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110772612.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.980 kcal (2) G-P(sol) polarization free energy of solvation -79.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.807 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds