Wall clock time and date at job start Wed Apr 1 2020 04:25:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 N 1.46498 * 109.47034 * 2 1 4 4 C 1.46496 * 120.00226 * 90.00236 * 3 2 1 5 5 C 1.50709 * 109.47029 * 89.99762 * 4 3 2 6 6 H 1.08003 * 119.99717 * 0.02562 * 5 4 3 7 7 C 1.37868 * 119.99923 * 180.02562 * 5 4 3 8 8 N 1.31518 * 120.00330 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99819 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47324 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.46776 * 120.00252 * 9 7 5 12 12 H 1.48498 * 109.47173 * 240.00036 * 9 7 5 13 13 C 1.34779 * 120.00024 * 269.72471 * 3 2 1 14 14 O 1.21277 * 120.00245 * 179.97438 * 13 3 2 15 15 C 1.50705 * 119.99989 * 0.02562 * 13 3 2 16 16 N 1.46902 * 109.47006 * 179.97438 * 15 13 3 17 17 C 1.46895 * 111.00054 * 294.29991 * 16 15 13 18 18 C 1.53237 * 109.34183 * 172.75074 * 17 16 15 19 19 N 1.47075 * 108.52112 * 53.82746 * 18 17 16 20 20 C 1.34781 * 120.88073 * 128.79779 * 19 18 17 21 21 O 1.21281 * 119.99869 * 176.32278 * 20 19 18 22 22 C 1.50693 * 119.99855 * 356.32583 * 20 19 18 23 23 C 1.53003 * 109.47149 * 163.75786 * 22 20 19 24 24 F 1.39903 * 109.47112 * 283.75376 * 22 20 19 25 25 F 1.39900 * 109.47571 * 43.75676 * 22 20 19 26 26 C 1.47079 * 118.24059 * 308.81403 * 19 18 17 27 27 C 1.46900 * 110.99763 * 169.99941 * 16 15 13 28 28 H 1.08994 * 109.47289 * 59.99727 * 1 2 3 29 29 H 1.08997 * 109.46887 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46359 * 299.99943 * 1 2 3 31 31 H 1.08996 * 109.46608 * 240.00523 * 2 1 3 32 32 H 1.08994 * 109.47289 * 120.00272 * 2 1 3 33 33 H 1.08998 * 109.47482 * 209.99585 * 4 3 2 34 34 H 1.08996 * 109.47025 * 329.99945 * 4 3 2 35 35 H 0.96997 * 119.99858 * 180.02562 * 8 7 5 36 36 H 1.08997 * 109.46906 * 299.99788 * 15 13 3 37 37 H 1.09001 * 109.47141 * 60.00090 * 15 13 3 38 38 H 1.09001 * 109.49749 * 292.71041 * 17 16 15 39 39 H 1.09001 * 109.49376 * 52.78822 * 17 16 15 40 40 H 1.09000 * 109.62632 * 294.12103 * 18 17 16 41 41 H 1.08993 * 109.63342 * 173.54218 * 18 17 16 42 42 H 1.08996 * 109.46997 * 59.99574 * 23 22 20 43 43 H 1.09007 * 109.47145 * 180.02562 * 23 22 20 44 44 H 1.09007 * 109.46984 * 299.99661 * 23 22 20 45 45 H 1.08999 * 109.63280 * 291.47923 * 26 19 18 46 46 H 1.08996 * 109.78890 * 170.98608 * 26 19 18 47 47 H 1.09003 * 109.49167 * 307.21467 * 27 16 15 48 48 H 1.09003 * 109.49656 * 67.29284 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 1.2687 5 6 3.6860 1.8350 1.7037 6 1 4.3430 1.2308 1.0956 7 6 4.1493 2.3896 2.8778 8 7 3.3491 3.1249 3.6185 9 14 5.9138 2.0966 3.4166 10 1 6.6017 1.2424 2.4155 11 1 6.6206 3.3981 3.5254 12 1 5.9218 1.4170 4.7369 13 6 2.2483 2.0147 -1.1672 14 8 2.6521 3.1583 -1.1672 15 6 2.0025 1.3024 -2.4723 16 7 2.3253 2.2008 -3.5889 17 6 1.4040 3.3443 -3.6277 18 6 1.8811 4.3447 -4.6859 19 7 2.0428 3.6327 -5.9626 20 6 1.4735 4.0991 -7.0918 21 8 1.6718 3.5368 -8.1479 22 6 0.5906 5.3193 -7.0419 23 6 0.4061 5.8734 -8.4561 24 9 -0.6562 4.9714 -6.5111 25 9 1.1863 6.2933 -6.2335 26 6 2.8419 2.3980 -5.9746 27 6 2.3269 1.4742 -4.8656 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3632 0.5138 0.8900 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 2.0957 3.1410 1.1384 34 1 1.5819 1.6877 2.0283 35 1 3.6752 3.5153 4.4443 36 1 2.6326 0.4146 -2.5260 37 1 0.9547 1.0085 -2.5342 38 1 0.4027 2.9963 -3.8815 39 1 1.3845 3.8290 -2.6516 40 1 2.8365 4.7719 -4.3814 41 1 1.1420 5.1375 -4.7999 42 1 -0.0580 5.1146 -9.0860 43 1 -0.2322 6.7563 -8.4200 44 1 1.3775 6.1445 -8.8697 45 1 3.8897 2.6381 -5.7939 46 1 2.7410 1.9024 -6.9401 47 1 2.9768 0.6026 -4.7872 48 1 1.3128 1.1522 -5.1022 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112596122.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:25:47 Heat of formation + Delta-G solvation = -140.292554 kcal Electronic energy + Delta-G solvation = -32197.620232 eV Core-core repulsion = 27538.460381 eV Total energy + Delta-G solvation = -4659.159851 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -49.69260 -47.59200 -40.47583 -39.36783 -37.89614 -35.39052 -34.70969 -32.80276 -32.06058 -31.32321 -30.14216 -29.50545 -27.32180 -25.82950 -24.55849 -23.75030 -23.04757 -22.33800 -21.41177 -19.94077 -18.52317 -18.20878 -18.15906 -17.33480 -16.68668 -16.36358 -16.14998 -15.73000 -15.46735 -15.30784 -15.05918 -14.73645 -14.61531 -14.44615 -14.25655 -13.93054 -13.86781 -13.71564 -13.41455 -13.21148 -13.12981 -12.92940 -12.84365 -12.48625 -12.41999 -12.23720 -12.02882 -11.87628 -11.66402 -11.51750 -11.36176 -11.21550 -11.07733 -10.90369 -10.74578 -10.55299 -10.21482 -10.13001 -9.61326 -9.26986 -8.84329 -8.44340 -8.28928 -7.66618 -6.05020 -4.09448 1.76689 2.20191 3.21384 3.29440 3.35478 3.38258 3.43256 3.48418 3.54188 3.93624 4.08860 4.15218 4.44802 4.63094 4.75780 4.87503 4.98223 5.01973 5.08895 5.13637 5.16031 5.26064 5.27889 5.30378 5.36800 5.43446 5.46596 5.51545 5.60293 5.61576 5.73021 5.83803 5.89779 5.98085 6.09737 6.19443 6.42795 6.68640 6.89807 6.95900 7.09935 7.38904 7.43106 7.54093 7.91805 8.22832 8.40760 8.90286 9.09557 9.55927 11.03081 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.016269 B = 0.002519 C = 0.002428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.651588 B =11111.567770 C =11531.250677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.106 3.894 3 N -0.598 5.598 4 C 0.247 3.753 5 C -0.524 4.524 6 H 0.057 0.943 7 C 0.060 3.940 8 N -0.895 5.895 9 Si 0.897 3.103 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.284 1.284 13 C 0.507 3.493 14 O -0.524 6.524 15 C 0.037 3.963 16 N -0.519 5.519 17 C 0.037 3.963 18 C 0.095 3.905 19 N -0.590 5.590 20 C 0.486 3.514 21 O -0.512 6.512 22 C 0.281 3.719 23 C -0.179 4.179 24 F -0.182 7.182 25 F -0.181 7.181 26 C 0.116 3.884 27 C 0.042 3.958 28 H 0.048 0.952 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.083 0.917 33 H 0.043 0.957 34 H 0.031 0.969 35 H 0.262 0.738 36 H 0.099 0.901 37 H 0.057 0.943 38 H 0.032 0.968 39 H 0.116 0.884 40 H 0.092 0.908 41 H 0.101 0.899 42 H 0.099 0.901 43 H 0.090 0.910 44 H 0.094 0.906 45 H 0.085 0.915 46 H 0.097 0.903 47 H 0.092 0.908 48 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.915 -1.574 -21.214 22.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.018 4.018 3 N -0.331 5.331 4 C 0.128 3.872 5 C -0.563 4.563 6 H 0.076 0.924 7 C -0.141 4.141 8 N -0.535 5.535 9 Si 0.725 3.275 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.210 1.210 13 C 0.292 3.708 14 O -0.400 6.400 15 C -0.093 4.093 16 N -0.244 5.244 17 C -0.091 4.091 18 C -0.027 4.027 19 N -0.323 5.323 20 C 0.269 3.731 21 O -0.388 6.388 22 C 0.241 3.759 23 C -0.237 4.237 24 F -0.163 7.163 25 F -0.162 7.162 26 C -0.006 4.006 27 C -0.087 4.087 28 H 0.067 0.933 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.101 0.899 33 H 0.061 0.939 34 H 0.049 0.951 35 H 0.072 0.928 36 H 0.118 0.882 37 H 0.075 0.925 38 H 0.050 0.950 39 H 0.134 0.866 40 H 0.110 0.890 41 H 0.119 0.881 42 H 0.118 0.882 43 H 0.109 0.891 44 H 0.113 0.887 45 H 0.103 0.897 46 H 0.116 0.884 47 H 0.110 0.890 48 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -7.132 -0.966 -21.458 22.633 hybrid contribution 0.078 -0.528 0.663 0.851 sum -7.054 -1.493 -20.795 22.009 Atomic orbital electron populations 1.22219 0.96866 1.01388 1.02227 1.21405 0.93416 0.84339 1.02635 1.48274 1.63826 1.13293 1.07716 1.19259 0.96268 0.93593 0.78042 1.21466 0.96896 1.31763 1.06129 0.92440 1.24932 0.97823 0.94952 0.96425 1.69940 1.35577 1.33594 1.14343 0.86453 0.84699 0.78064 0.78260 1.19808 1.20885 1.21028 1.20079 0.78842 0.87171 0.84673 1.90632 1.44813 1.17844 1.86742 1.22082 1.00507 0.96098 0.90654 1.61546 1.52296 1.08804 1.01738 1.22675 0.92543 0.92279 1.01571 1.22458 1.04247 0.94916 0.81065 1.48325 1.49456 1.25906 1.08579 1.20741 0.81760 0.85875 0.84754 1.90752 1.60979 1.58233 1.28847 1.21376 0.78457 0.85546 0.90527 1.22610 1.06049 1.03646 0.91411 1.93097 1.42553 1.92504 1.88125 1.93015 1.83683 1.64597 1.74940 1.21855 0.95468 0.83765 0.99538 1.22508 1.00464 0.96571 0.89148 0.93309 0.92184 0.91969 0.91923 0.89884 0.93914 0.95083 0.92797 0.88247 0.92492 0.94965 0.86621 0.88952 0.88092 0.88207 0.89086 0.88676 0.89688 0.88426 0.88953 0.94355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.14 10.24 37.16 0.38 -1.76 16 2 C 0.11 1.61 5.94 -4.04 -0.02 1.59 16 3 N -0.60 -12.05 2.46 -175.06 -0.43 -12.48 16 4 C 0.25 6.29 5.16 -5.19 -0.03 6.26 16 5 C -0.52 -14.60 9.38 -34.44 -0.32 -14.93 16 6 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 7 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 8 N -0.90 -26.36 13.29 55.43 0.74 -25.63 16 9 Si 0.90 21.74 29.54 -169.99 -5.02 16.72 16 10 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 13 C 0.51 9.94 7.33 -10.98 -0.08 9.86 16 14 O -0.52 -12.41 13.91 5.56 0.08 -12.33 16 15 C 0.04 0.53 4.00 -4.97 -0.02 0.51 16 16 N -0.52 -7.16 4.37 -235.76 -1.03 -8.19 16 17 C 0.04 0.52 5.25 -3.70 -0.02 0.50 16 18 C 0.10 1.17 5.95 -3.61 -0.02 1.15 16 19 N -0.59 -6.94 3.01 -172.47 -0.52 -7.46 16 20 C 0.49 5.75 7.20 -10.99 -0.08 5.67 16 21 O -0.51 -6.88 15.48 5.56 0.09 -6.79 16 22 C 0.28 2.83 1.80 -27.88 -0.05 2.78 16 23 C -0.18 -1.30 8.81 37.16 0.33 -0.97 16 24 F -0.18 -1.99 16.81 2.25 0.04 -1.95 16 25 F -0.18 -1.90 14.11 2.25 0.03 -1.87 16 26 C 0.12 1.23 6.58 -3.60 -0.02 1.20 16 27 C 0.04 0.44 5.62 -3.70 -0.02 0.42 16 28 H 0.05 0.59 7.25 -51.93 -0.38 0.21 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.06 0.77 6.43 -51.93 -0.33 0.44 16 32 H 0.08 1.32 8.07 -51.93 -0.42 0.90 16 33 H 0.04 1.23 7.43 -51.93 -0.39 0.84 16 34 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 35 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 36 H 0.10 1.24 7.23 -51.93 -0.38 0.86 16 37 H 0.06 0.70 7.20 -51.93 -0.37 0.33 16 38 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.12 1.91 5.76 -51.93 -0.30 1.61 16 40 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.10 1.16 4.75 -51.93 -0.25 0.92 16 42 H 0.10 0.70 7.93 -51.93 -0.41 0.29 16 43 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 44 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 46 H 0.10 0.98 7.10 -51.93 -0.37 0.61 16 47 H 0.09 0.82 7.99 -51.93 -0.41 0.40 16 48 H 0.04 0.40 8.14 -51.93 -0.42 -0.03 16 LS Contribution 389.47 15.07 5.87 5.87 Total: -1.00 -33.45 389.47 -7.59 -41.04 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -7.35 Total: -0.81 kcal Atomic # 6 Polarization: 13.96 SS G_CDS: -0.08 Total: 13.88 kcal Atomic # 7 Polarization: -52.52 SS G_CDS: -1.24 Total: -53.76 kcal Atomic # 8 Polarization: -19.28 SS G_CDS: 0.16 Total: -19.12 kcal Atomic # 9 Polarization: -3.89 SS G_CDS: 0.07 Total: -3.82 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.45 -7.59 -41.04 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112596122.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.252 kcal (2) G-P(sol) polarization free energy of solvation -33.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds