Wall clock time and date at job start Wed Apr 1 2020 05:17:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34943 * 126.04085 * 2 1 4 4 C 1.35317 * 107.74768 * 180.14749 * 3 2 1 5 5 C 1.50698 * 126.03694 * 179.87404 * 4 3 2 6 6 C 1.50706 * 109.47294 * 269.71438 * 5 4 3 7 7 O 1.21279 * 119.99507 * 0.02562 * 6 5 4 8 8 N 1.34774 * 120.00020 * 180.02562 * 6 5 4 9 9 C 1.46496 * 119.99544 * 180.02562 * 8 6 5 10 10 H 1.08994 * 115.52294 * 9.41332 * 9 8 6 11 11 C 1.53009 * 117.43931 * 223.99519 * 9 8 6 12 12 H 1.08992 * 119.52647 * 4.09275 * 11 9 8 13 13 C 1.54381 * 118.12732 * 160.68872 * 11 9 8 14 14 N 1.48564 * 104.59513 * 87.22718 * 13 11 9 15 15 C 1.46900 * 110.99657 * 200.96230 * 14 13 11 16 16 C 1.50705 * 109.46708 * 190.00258 * 15 14 13 17 17 O 1.21288 * 120.00022 * 359.97438 * 16 15 14 18 18 N 1.34778 * 120.00097 * 179.97438 * 16 15 14 19 19 C 1.37095 * 120.00275 * 180.02562 * 18 16 15 20 20 H 1.07999 * 119.99642 * 359.97438 * 19 18 16 21 21 C 1.38945 * 120.00180 * 180.02562 * 19 18 16 22 22 N 1.31411 * 120.00346 * 179.97438 * 21 19 18 23 23 Si 1.86808 * 119.99834 * 359.97438 * 21 19 18 24 24 H 1.48499 * 109.46815 * 90.00319 * 23 21 19 25 25 H 1.48507 * 109.47014 * 210.00076 * 23 21 19 26 26 H 1.48489 * 109.47060 * 330.00221 * 23 21 19 27 27 C 1.52013 * 104.44016 * 320.29900 * 14 13 11 28 28 C 1.53006 * 117.44260 * 154.84103 * 9 8 6 29 29 H 1.09005 * 119.52435 * 355.89891 * 28 9 8 30 30 C 1.39867 * 107.91922 * 359.61500 * 4 3 2 31 31 N 1.30837 * 108.20084 * 0.23781 * 30 4 3 32 32 H 1.09007 * 109.47235 * 270.30568 * 1 2 3 33 33 H 1.08999 * 109.47388 * 30.30511 * 1 2 3 34 34 H 1.08997 * 109.47306 * 150.31007 * 1 2 3 35 35 H 1.08002 * 126.12664 * 0.02562 * 3 2 1 36 36 H 1.09001 * 109.46665 * 149.71819 * 5 4 3 37 37 H 1.09000 * 109.47722 * 29.72151 * 5 4 3 38 38 H 0.96994 * 119.99756 * 0.02562 * 8 6 5 39 39 H 1.09000 * 110.41315 * 206.00777 * 13 11 9 40 40 H 1.09004 * 110.41200 * 328.45023 * 13 11 9 41 41 H 1.08999 * 109.47326 * 309.99982 * 15 14 13 42 42 H 1.09000 * 109.47636 * 70.00276 * 15 14 13 43 43 H 0.97003 * 119.99885 * 359.97438 * 18 16 15 44 44 H 0.96999 * 120.00421 * 179.97438 * 22 21 19 45 45 H 1.09005 * 111.92310 * 281.01929 * 27 14 13 46 46 H 1.09000 * 110.49045 * 157.46682 * 27 14 13 47 47 H 1.08000 * 125.89821 * 180.22176 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0911 0.0000 4 6 3.5437 0.6664 -0.0033 5 6 4.7680 1.5452 -0.0072 6 6 5.1763 1.8315 -1.4294 7 8 4.5359 1.3681 -2.3491 8 7 6.2531 2.6026 -1.6790 9 6 6.6496 2.8814 -3.0615 10 1 5.9394 2.5671 -3.8262 11 6 8.1387 2.7871 -3.4006 12 1 8.8433 2.4554 -2.6380 13 6 8.5386 2.6234 -4.8826 14 7 8.6266 4.0124 -5.4023 15 6 8.5070 4.0353 -6.8662 16 6 8.8434 5.4130 -7.3762 17 8 9.1520 6.2895 -6.5967 18 7 8.8015 5.6710 -8.6984 19 6 9.1081 6.9241 -9.1623 20 1 9.3828 7.7046 -8.4683 21 6 9.0643 7.1902 -10.5254 22 7 9.3576 8.3915 -10.9701 23 14 8.5884 5.8403 -11.7258 24 1 7.1174 5.8540 -11.9282 25 1 9.2691 6.0710 -13.0253 26 1 9.0005 4.5231 -11.1781 27 6 7.4550 4.7339 -4.7559 28 6 7.4459 4.1617 -3.3221 29 1 7.6347 4.8534 -2.5011 30 6 3.5346 -0.7322 0.0035 31 7 2.2891 -1.1328 0.0055 32 1 -0.3634 0.0055 1.0277 33 1 -0.3634 0.8872 -0.5185 34 1 -0.3634 -0.8927 -0.5090 35 1 1.9282 2.1193 0.0004 36 1 5.5820 1.0363 0.5090 37 1 4.5442 2.4824 0.5024 38 1 6.7654 2.9730 -0.9434 39 1 9.5050 2.1256 -4.9629 40 1 7.7754 2.0631 -5.4227 41 1 9.1960 3.3096 -7.2985 42 1 7.4860 3.7816 -7.1515 43 1 8.5551 4.9698 -9.3218 44 1 9.3275 8.5772 -11.9217 45 1 6.5136 4.5135 -5.2593 46 1 7.6335 5.8089 -4.7351 47 1 4.4053 -1.3711 0.0064 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001113993433.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:17:12 Heat of formation + Delta-G solvation = 65.073541 kcal Electronic energy + Delta-G solvation = -28795.523029 eV Core-core repulsion = 24595.957706 eV Total energy + Delta-G solvation = -4199.565323 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.58626 -40.35912 -39.16363 -38.05496 -35.10632 -34.01615 -33.89122 -32.77942 -31.91301 -31.59447 -28.83848 -28.37437 -27.64385 -26.18071 -24.54895 -22.57880 -21.46457 -21.22065 -21.07695 -20.28562 -20.14995 -19.28297 -18.21812 -17.44114 -17.23055 -16.83087 -15.90269 -15.71560 -15.46019 -15.22660 -14.94576 -14.77122 -14.69694 -14.23932 -13.80399 -13.65216 -13.53525 -13.37568 -13.23298 -13.00874 -12.88993 -12.80372 -12.59222 -12.36334 -12.23034 -12.07814 -11.78840 -11.49640 -11.34042 -11.11360 -10.94124 -10.83253 -10.57430 -10.18733 -10.09825 -9.95121 -9.74412 -9.52981 -8.95029 -8.74397 -8.60547 -8.15950 -8.09211 -6.28432 -3.79627 1.54629 2.16753 2.33958 2.34621 2.90864 3.04998 3.08899 3.17032 3.57269 3.77673 3.95652 4.11429 4.12788 4.44243 4.49283 4.51471 4.55768 4.69881 4.71579 4.73488 4.76860 4.89443 4.93724 4.96954 5.10198 5.19243 5.22021 5.25327 5.42415 5.48192 5.56294 5.64924 5.69767 5.70754 5.74028 5.92284 5.96978 6.01650 6.26181 6.28812 6.33633 6.63455 6.87855 7.07380 7.21543 7.35486 7.61307 7.98862 8.17293 8.63577 8.98384 9.45677 9.87378 10.84786 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.019186 B = 0.001634 C = 0.001570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.080934 B =17136.718057 C =17829.934582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.376 5.376 3 C 0.071 3.929 4 C -0.224 4.224 5 C -0.057 4.057 6 C 0.515 3.485 7 O -0.528 6.528 8 N -0.703 5.703 9 C 0.105 3.895 10 H 0.132 0.868 11 C -0.167 4.167 12 H 0.118 0.882 13 C 0.060 3.940 14 N -0.481 5.481 15 C 0.028 3.972 16 C 0.456 3.544 17 O -0.558 6.558 18 N -0.593 5.593 19 C -0.303 4.303 20 H 0.119 0.881 21 C 0.041 3.959 22 N -0.883 5.883 23 Si 0.879 3.121 24 H -0.271 1.271 25 H -0.277 1.277 26 H -0.269 1.269 27 C 0.065 3.935 28 C -0.163 4.163 29 H 0.118 0.882 30 C 0.064 3.936 31 N -0.299 5.299 32 H 0.074 0.926 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.172 0.828 36 H 0.102 0.898 37 H 0.100 0.900 38 H 0.402 0.598 39 H 0.088 0.912 40 H 0.045 0.955 41 H 0.091 0.909 42 H 0.053 0.947 43 H 0.370 0.630 44 H 0.273 0.727 45 H 0.049 0.951 46 H 0.104 0.896 47 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.573 -17.653 24.487 33.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.158 5.158 3 C -0.076 4.076 4 C -0.236 4.236 5 C -0.098 4.098 6 C 0.301 3.699 7 O -0.403 6.403 8 N -0.353 5.353 9 C -0.001 4.001 10 H 0.149 0.851 11 C -0.188 4.188 12 H 0.136 0.864 13 C -0.068 4.068 14 N -0.205 5.205 15 C -0.104 4.104 16 C 0.241 3.759 17 O -0.439 6.439 18 N -0.233 5.233 19 C -0.432 4.432 20 H 0.137 0.863 21 C -0.162 4.162 22 N -0.523 5.523 23 Si 0.705 3.295 24 H -0.197 1.197 25 H -0.202 1.202 26 H -0.195 1.195 27 C -0.062 4.062 28 C -0.183 4.183 29 H 0.136 0.864 30 C -0.123 4.123 31 N -0.120 5.120 32 H 0.093 0.907 33 H 0.106 0.894 34 H 0.108 0.892 35 H 0.189 0.811 36 H 0.121 0.879 37 H 0.118 0.882 38 H 0.237 0.763 39 H 0.107 0.893 40 H 0.063 0.937 41 H 0.109 0.891 42 H 0.071 0.929 43 H 0.202 0.798 44 H 0.083 0.917 45 H 0.067 0.933 46 H 0.123 0.877 47 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -14.276 -18.007 24.285 33.434 hybrid contribution -0.195 -0.366 -1.108 1.183 sum -14.471 -18.373 23.177 32.926 Atomic orbital electron populations 1.21863 0.74141 1.04685 1.03279 1.48400 1.06664 1.03833 1.56881 1.22262 0.90816 0.93384 1.01140 1.19367 0.93335 0.93678 1.17189 1.19870 0.96212 1.00279 0.93482 1.20823 0.79551 0.77579 0.91930 1.90727 1.52830 1.50154 1.46574 1.45348 1.30450 1.52284 1.07202 1.21797 0.93343 0.99846 0.85164 0.85064 1.23884 0.95108 1.01604 0.98196 0.86361 1.22631 1.01147 0.91138 0.91895 1.66341 1.40331 1.09213 1.04603 1.22099 1.00756 0.98114 0.89419 1.19585 0.84346 0.89234 0.82737 1.90548 1.51042 1.47083 1.55235 1.42211 1.62952 1.12262 1.05906 1.19421 1.43425 0.87372 0.92984 0.86292 1.25023 0.97724 0.96564 0.96849 1.69619 1.47975 1.19705 1.14999 0.86683 0.79363 0.81675 0.81740 1.19693 1.20200 1.19491 1.23301 0.91587 1.01190 0.90090 1.23887 1.04123 0.90545 0.99738 0.86377 1.23718 0.95236 0.94329 0.98976 1.77354 1.01649 1.08263 1.24755 0.90746 0.89416 0.89241 0.81076 0.87936 0.88225 0.76335 0.89344 0.93676 0.89116 0.92936 0.79765 0.91668 0.93264 0.87743 0.80195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.46 11.47 59.85 0.69 1.14 16 2 N -0.38 -3.27 4.01 -68.16 -0.27 -3.54 16 3 C 0.07 0.55 11.40 -17.23 -0.20 0.36 16 4 C -0.22 -1.87 4.59 -105.05 -0.48 -2.35 16 5 C -0.06 -0.33 6.19 -29.03 -0.18 -0.51 16 6 C 0.51 4.77 7.82 -10.98 -0.09 4.69 16 7 O -0.53 -7.45 15.60 5.56 0.09 -7.37 16 8 N -0.70 -5.51 5.56 -53.80 -0.30 -5.81 16 9 C 0.11 1.09 5.97 -67.92 -0.41 0.69 16 10 H 0.13 1.65 7.40 -51.93 -0.38 1.27 16 11 C -0.17 -1.77 7.05 -89.30 -0.63 -2.40 16 12 H 0.12 1.07 8.14 -51.93 -0.42 0.65 16 13 C 0.06 0.74 6.27 -2.18 -0.01 0.73 16 14 N -0.48 -7.70 5.02 -228.25 -1.15 -8.85 16 15 C 0.03 0.48 5.33 -4.97 -0.03 0.45 16 16 C 0.46 10.43 7.63 -10.98 -0.08 10.34 16 17 O -0.56 -14.96 14.85 5.55 0.08 -14.88 16 18 N -0.59 -14.26 5.09 -10.96 -0.06 -14.32 16 19 C -0.30 -8.63 10.16 -14.94 -0.15 -8.78 16 20 H 0.12 3.86 7.39 -52.49 -0.39 3.47 16 21 C 0.04 1.13 5.50 -17.47 -0.10 1.04 16 22 N -0.88 -25.93 13.96 55.50 0.77 -25.16 16 23 Si 0.88 19.56 27.74 -169.99 -4.71 14.84 16 24 H -0.27 -5.93 7.11 56.52 0.40 -5.52 16 25 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 26 H -0.27 -5.48 6.52 56.52 0.37 -5.11 16 27 C 0.07 0.98 5.91 -0.19 0.00 0.98 16 28 C -0.16 -1.85 6.95 -89.31 -0.62 -2.47 16 29 H 0.12 1.20 8.14 -51.93 -0.42 0.78 16 30 C 0.06 0.60 11.96 -17.37 -0.21 0.39 16 31 N -0.30 -3.28 12.58 30.62 0.39 -2.89 16 32 H 0.07 0.22 8.14 -51.92 -0.42 -0.20 16 33 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 34 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 35 H 0.17 0.82 8.06 -52.49 -0.42 0.40 16 36 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.40 1.92 8.83 -40.82 -0.36 1.56 16 39 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 40 H 0.05 0.53 8.00 -51.93 -0.42 0.11 16 41 H 0.09 1.36 8.08 -51.93 -0.42 0.94 16 42 H 0.05 0.79 7.85 -51.93 -0.41 0.39 16 43 H 0.37 7.83 5.76 -40.82 -0.24 7.59 16 44 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 45 H 0.05 0.71 7.88 -51.93 -0.41 0.30 16 46 H 0.10 1.84 7.32 -51.93 -0.38 1.46 16 47 H 0.18 1.24 8.06 -52.49 -0.42 0.82 16 LS Contribution 397.40 15.07 5.99 5.99 Total: -1.00 -38.84 397.40 -8.46 -47.30 By element: Atomic # 1 Polarization: 17.19 SS G_CDS: -6.79 Total: 10.39 kcal Atomic # 6 Polarization: 6.79 SS G_CDS: -2.49 Total: 4.30 kcal Atomic # 7 Polarization: -59.96 SS G_CDS: -0.62 Total: -60.57 kcal Atomic # 8 Polarization: -22.42 SS G_CDS: 0.17 Total: -22.25 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -4.71 Total: 14.84 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -38.84 -8.46 -47.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113993433.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.371 kcal (2) G-P(sol) polarization free energy of solvation -38.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.298 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds