Wall clock time and date at job start Wed Apr 1 2020 05:17:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34943 * 126.04085 * 2 1 4 4 C 1.35317 * 107.74768 * 180.14749 * 3 2 1 5 5 C 1.50698 * 126.03694 * 179.87404 * 4 3 2 6 6 C 1.50706 * 109.47294 * 269.71438 * 5 4 3 7 7 O 1.21279 * 119.99507 * 0.02562 * 6 5 4 8 8 N 1.34774 * 120.00020 * 180.02562 * 6 5 4 9 9 C 1.46496 * 119.99544 * 180.02562 * 8 6 5 10 10 H 1.08994 * 115.52294 * 9.41332 * 9 8 6 11 11 C 1.53009 * 117.43931 * 223.99519 * 9 8 6 12 12 H 1.08992 * 119.52647 * 4.09275 * 11 9 8 13 13 C 1.54381 * 118.12732 * 160.68872 * 11 9 8 14 14 N 1.48564 * 104.59513 * 87.22718 * 13 11 9 15 15 C 1.46900 * 110.99657 * 200.96230 * 14 13 11 16 16 C 1.50705 * 109.46708 * 190.00258 * 15 14 13 17 17 O 1.21288 * 120.00022 * 359.97438 * 16 15 14 18 18 N 1.34778 * 120.00097 * 179.97438 * 16 15 14 19 19 C 1.37095 * 120.00275 * 180.02562 * 18 16 15 20 20 H 1.07999 * 119.99642 * 359.97438 * 19 18 16 21 21 C 1.38945 * 120.00180 * 180.02562 * 19 18 16 22 22 N 1.31411 * 120.00346 * 179.97438 * 21 19 18 23 23 Si 1.86808 * 119.99834 * 359.97438 * 21 19 18 24 24 H 1.48499 * 109.46815 * 90.00319 * 23 21 19 25 25 H 1.48507 * 109.47014 * 210.00076 * 23 21 19 26 26 H 1.48489 * 109.47060 * 330.00221 * 23 21 19 27 27 C 1.52013 * 104.44016 * 320.29900 * 14 13 11 28 28 C 1.53006 * 117.44260 * 154.84103 * 9 8 6 29 29 H 1.09005 * 119.52435 * 355.89891 * 28 9 8 30 30 C 1.39867 * 107.91922 * 359.61500 * 4 3 2 31 31 N 1.30837 * 108.20084 * 0.23781 * 30 4 3 32 32 H 1.09007 * 109.47235 * 270.30568 * 1 2 3 33 33 H 1.08999 * 109.47388 * 30.30511 * 1 2 3 34 34 H 1.08997 * 109.47306 * 150.31007 * 1 2 3 35 35 H 1.08002 * 126.12664 * 0.02562 * 3 2 1 36 36 H 1.09001 * 109.46665 * 149.71819 * 5 4 3 37 37 H 1.09000 * 109.47722 * 29.72151 * 5 4 3 38 38 H 0.96994 * 119.99756 * 0.02562 * 8 6 5 39 39 H 1.09000 * 110.41315 * 206.00777 * 13 11 9 40 40 H 1.09004 * 110.41200 * 328.45023 * 13 11 9 41 41 H 1.08999 * 109.47326 * 309.99982 * 15 14 13 42 42 H 1.09000 * 109.47636 * 70.00276 * 15 14 13 43 43 H 0.97003 * 119.99885 * 359.97438 * 18 16 15 44 44 H 0.96999 * 120.00421 * 179.97438 * 22 21 19 45 45 H 1.09005 * 111.92310 * 281.01929 * 27 14 13 46 46 H 1.09000 * 110.49045 * 157.46682 * 27 14 13 47 47 H 1.08000 * 125.89821 * 180.22176 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0911 0.0000 4 6 3.5437 0.6664 -0.0033 5 6 4.7680 1.5452 -0.0072 6 6 5.1763 1.8315 -1.4294 7 8 4.5359 1.3681 -2.3491 8 7 6.2531 2.6026 -1.6790 9 6 6.6496 2.8814 -3.0615 10 1 5.9394 2.5671 -3.8262 11 6 8.1387 2.7871 -3.4006 12 1 8.8433 2.4554 -2.6380 13 6 8.5386 2.6234 -4.8826 14 7 8.6266 4.0124 -5.4023 15 6 8.5070 4.0353 -6.8662 16 6 8.8434 5.4130 -7.3762 17 8 9.1520 6.2895 -6.5967 18 7 8.8015 5.6710 -8.6984 19 6 9.1081 6.9241 -9.1623 20 1 9.3828 7.7046 -8.4683 21 6 9.0643 7.1902 -10.5254 22 7 9.3576 8.3915 -10.9701 23 14 8.5884 5.8403 -11.7258 24 1 7.1174 5.8540 -11.9282 25 1 9.2691 6.0710 -13.0253 26 1 9.0005 4.5231 -11.1781 27 6 7.4550 4.7339 -4.7559 28 6 7.4459 4.1617 -3.3221 29 1 7.6347 4.8534 -2.5011 30 6 3.5346 -0.7322 0.0035 31 7 2.2891 -1.1328 0.0055 32 1 -0.3634 0.0055 1.0277 33 1 -0.3634 0.8872 -0.5185 34 1 -0.3634 -0.8927 -0.5090 35 1 1.9282 2.1193 0.0004 36 1 5.5820 1.0363 0.5090 37 1 4.5442 2.4824 0.5024 38 1 6.7654 2.9730 -0.9434 39 1 9.5050 2.1256 -4.9629 40 1 7.7754 2.0631 -5.4227 41 1 9.1960 3.3096 -7.2985 42 1 7.4860 3.7816 -7.1515 43 1 8.5551 4.9698 -9.3218 44 1 9.3275 8.5772 -11.9217 45 1 6.5136 4.5135 -5.2593 46 1 7.6335 5.8089 -4.7351 47 1 4.4053 -1.3711 0.0064 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001113993433.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:17:11 Heat of formation + Delta-G solvation = 33.064840 kcal Electronic energy + Delta-G solvation = -28796.911031 eV Core-core repulsion = 24595.957706 eV Total energy + Delta-G solvation = -4200.953324 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.15620 -41.28994 -40.31010 -39.57212 -36.28872 -35.75138 -34.53777 -33.82104 -33.58152 -32.52278 -29.56487 -29.38266 -28.85370 -26.86791 -26.21230 -23.71903 -22.08929 -22.02632 -21.88021 -21.31907 -21.10378 -20.80348 -20.13866 -18.14271 -17.92331 -17.70013 -17.41787 -16.83533 -16.30663 -16.25286 -16.17234 -16.09903 -15.43761 -15.26393 -15.03911 -14.82083 -14.64376 -14.41488 -14.25047 -14.01396 -13.97461 -13.82994 -13.43718 -13.32409 -13.23540 -13.08564 -12.96558 -12.70239 -12.49462 -12.41033 -12.35296 -11.98223 -11.83402 -11.52499 -11.49263 -11.07377 -10.91032 -10.40091 -10.34542 -10.23570 -9.73110 -9.39552 -9.29739 -8.40761 -6.01244 0.98270 1.30127 1.35016 1.43895 1.65818 1.66555 1.75978 1.96954 2.22403 2.23261 2.63271 2.75554 3.15291 3.23850 3.60360 3.66352 3.71259 3.88060 3.97749 4.01375 4.07641 4.19664 4.26387 4.31485 4.34229 4.36913 4.43255 4.45860 4.52641 4.54915 4.64001 4.67861 4.81691 4.89676 4.91413 4.94878 5.15346 5.16595 5.20155 5.51982 5.54413 5.71146 5.72529 5.88758 6.00780 6.16624 6.60658 6.63406 6.75934 6.89303 7.35715 7.40810 7.98315 8.76885 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.019186 B = 0.001634 C = 0.001570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.080934 B =17136.718057 C =17829.934582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.384 5.384 3 C 0.064 3.936 4 C -0.239 4.239 5 C -0.047 4.047 6 C 0.515 3.485 7 O -0.582 6.582 8 N -0.688 5.688 9 C 0.116 3.884 10 H 0.110 0.890 11 C -0.155 4.155 12 H 0.142 0.858 13 C 0.059 3.941 14 N -0.506 5.506 15 C 0.040 3.960 16 C 0.454 3.546 17 O -0.605 6.605 18 N -0.594 5.594 19 C -0.327 4.327 20 H 0.056 0.944 21 C -0.014 4.014 22 N -0.934 5.934 23 Si 0.963 3.037 24 H -0.258 1.258 25 H -0.274 1.274 26 H -0.232 1.232 27 C 0.062 3.938 28 C -0.165 4.165 29 H 0.131 0.869 30 C 0.049 3.951 31 N -0.344 5.344 32 H 0.090 0.910 33 H 0.109 0.891 34 H 0.084 0.916 35 H 0.200 0.800 36 H 0.130 0.870 37 H 0.131 0.869 38 H 0.421 0.579 39 H 0.102 0.898 40 H 0.054 0.946 41 H 0.121 0.879 42 H 0.078 0.922 43 H 0.389 0.611 44 H 0.279 0.721 45 H 0.050 0.950 46 H 0.066 0.934 47 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.160 -20.454 25.358 35.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.166 5.166 3 C -0.083 4.083 4 C -0.251 4.251 5 C -0.087 4.087 6 C 0.304 3.696 7 O -0.460 6.460 8 N -0.339 5.339 9 C 0.009 3.991 10 H 0.128 0.872 11 C -0.175 4.175 12 H 0.159 0.841 13 C -0.068 4.068 14 N -0.231 5.231 15 C -0.092 4.092 16 C 0.241 3.759 17 O -0.489 6.489 18 N -0.236 5.236 19 C -0.456 4.456 20 H 0.074 0.926 21 C -0.213 4.213 22 N -0.575 5.575 23 Si 0.783 3.217 24 H -0.183 1.183 25 H -0.199 1.199 26 H -0.155 1.155 27 C -0.065 4.065 28 C -0.186 4.186 29 H 0.149 0.851 30 C -0.137 4.137 31 N -0.166 5.166 32 H 0.108 0.892 33 H 0.127 0.873 34 H 0.103 0.897 35 H 0.217 0.783 36 H 0.148 0.852 37 H 0.148 0.852 38 H 0.258 0.742 39 H 0.121 0.879 40 H 0.072 0.928 41 H 0.138 0.862 42 H 0.096 0.904 43 H 0.224 0.776 44 H 0.088 0.912 45 H 0.068 0.932 46 H 0.084 0.916 47 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -14.848 -20.824 25.213 35.914 hybrid contribution -0.020 0.622 -1.280 1.423 sum -14.868 -20.202 23.933 34.669 Atomic orbital electron populations 1.22146 0.72409 1.05536 1.04620 1.48748 1.07856 1.03559 1.56469 1.22845 0.90922 0.94400 1.00119 1.19733 0.94563 0.93528 1.17256 1.19944 0.96015 1.01563 0.91218 1.21479 0.78814 0.76480 0.92848 1.90715 1.54565 1.52324 1.48433 1.45227 1.30285 1.51752 1.06660 1.21490 0.92885 0.98557 0.86188 0.87205 1.23967 0.95486 1.00243 0.97837 0.84069 1.22715 1.02332 0.88948 0.92836 1.66278 1.41060 1.11798 1.03963 1.22005 1.02813 0.93972 0.90420 1.20815 0.81902 0.91242 0.81897 1.90528 1.52472 1.49450 1.56403 1.42044 1.63558 1.11124 1.06884 1.18999 1.45458 0.88300 0.92850 0.92614 1.26078 0.96717 0.99826 0.98661 1.69800 1.49039 1.22734 1.15955 0.85389 0.79481 0.78915 0.77898 1.18303 1.19940 1.15543 1.23166 0.91363 0.99269 0.92739 1.23733 1.05647 0.91226 0.97948 0.85101 1.24118 0.95351 0.95496 0.98709 1.77266 1.02717 1.10063 1.26519 0.89167 0.87289 0.89680 0.78337 0.85158 0.85156 0.74155 0.87945 0.92757 0.86151 0.90399 0.77612 0.91181 0.93229 0.91559 0.78873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.74 11.47 127.77 1.47 2.21 16 2 N -0.38 -6.36 4.01 -369.57 -1.48 -7.84 16 3 C 0.06 0.90 11.40 83.54 0.95 1.85 16 4 C -0.24 -3.55 4.59 -20.14 -0.09 -3.65 16 5 C -0.05 -0.38 6.19 29.10 0.18 -0.20 16 6 C 0.52 8.31 7.82 87.66 0.69 8.99 16 7 O -0.58 -15.81 15.60 -3.02 -0.05 -15.86 16 8 N -0.69 -8.75 5.56 -442.52 -2.46 -11.22 16 9 C 0.12 2.17 5.97 45.00 0.27 2.44 16 10 H 0.11 2.64 7.40 -2.39 -0.02 2.62 16 11 C -0.16 -2.82 7.05 -9.94 -0.07 -2.89 16 12 H 0.14 1.97 8.14 -2.39 -0.02 1.95 16 13 C 0.06 1.28 6.27 86.45 0.54 1.82 16 14 N -0.51 -15.55 5.02 -876.04 -4.40 -19.95 16 15 C 0.04 1.27 5.33 85.56 0.46 1.73 16 16 C 0.45 20.98 7.63 87.66 0.67 21.65 16 17 O -0.61 -34.00 14.85 -3.05 -0.05 -34.04 16 18 N -0.59 -28.58 5.09 -306.99 -1.56 -30.15 16 19 C -0.33 -19.41 10.16 84.04 0.85 -18.55 16 20 H 0.06 3.93 7.39 -2.91 -0.02 3.91 16 21 C -0.01 -0.80 5.50 84.93 0.47 -0.34 16 22 N -0.93 -56.85 13.96 21.66 0.30 -56.54 16 23 Si 0.96 39.41 27.74 68.60 1.90 41.31 16 24 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 25 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 26 H -0.23 -8.04 6.52 99.48 0.65 -7.39 16 27 C 0.06 1.85 5.91 85.75 0.51 2.36 16 28 C -0.17 -3.51 6.95 -9.94 -0.07 -3.57 16 29 H 0.13 2.42 8.14 -2.38 -0.02 2.40 16 30 C 0.05 0.88 11.96 85.24 1.02 1.90 16 31 N -0.34 -7.51 12.58 -57.02 -0.72 -8.22 16 32 H 0.09 0.41 8.14 -2.38 -0.02 0.39 16 33 H 0.11 0.36 8.14 -2.39 -0.02 0.34 16 34 H 0.08 0.73 8.14 -2.39 -0.02 0.72 16 35 H 0.20 1.39 8.06 -2.91 -0.02 1.36 16 36 H 0.13 0.36 8.14 -2.39 -0.02 0.34 16 37 H 0.13 0.29 8.14 -2.39 -0.02 0.27 16 38 H 0.42 2.37 8.83 -92.71 -0.82 1.55 16 39 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 40 H 0.05 1.10 8.00 -2.38 -0.02 1.08 16 41 H 0.12 3.17 8.08 -2.39 -0.02 3.15 16 42 H 0.08 2.14 7.85 -2.39 -0.02 2.12 16 43 H 0.39 15.55 5.76 -92.71 -0.53 15.02 16 44 H 0.28 15.49 8.31 -92.71 -0.77 14.72 16 45 H 0.05 1.44 7.88 -2.38 -0.02 1.42 16 46 H 0.07 2.47 7.32 -2.39 -0.02 2.45 16 47 H 0.19 2.55 8.06 -2.91 -0.02 2.52 16 Total: -1.00 -92.57 397.40 -1.07 -93.64 By element: Atomic # 1 Polarization: 33.52 SS G_CDS: -0.40 Total: 33.12 kcal Atomic # 6 Polarization: 7.91 SS G_CDS: 7.84 Total: 15.75 kcal Atomic # 7 Polarization: -123.60 SS G_CDS: -10.32 Total: -133.92 kcal Atomic # 8 Polarization: -49.81 SS G_CDS: -0.09 Total: -49.90 kcal Atomic # 14 Polarization: 39.41 SS G_CDS: 1.90 Total: 41.31 kcal Total: -92.57 -1.07 -93.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113993433.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.710 kcal (2) G-P(sol) polarization free energy of solvation -92.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.645 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds