Wall clock time and date at job start Wed Apr 1 2020 05:17:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34941 * 126.04185 * 2 1 4 4 C 1.35319 * 107.74849 * 179.75158 * 3 2 1 5 5 C 1.39872 * 107.92062 * 0.39547 * 4 3 2 6 6 C 1.50698 * 125.90127 * 179.86386 * 5 4 3 7 7 C 1.50698 * 109.46944 * 124.71402 * 6 5 4 8 8 O 1.21283 * 120.00472 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99538 * 179.97438 * 7 6 5 10 10 C 1.46499 * 119.99665 * 179.72653 * 9 7 6 11 11 H 1.09006 * 115.51803 * 9.69516 * 10 9 7 12 12 C 1.53005 * 117.44199 * 224.27588 * 10 9 7 13 13 H 1.08993 * 119.52823 * 4.09487 * 12 10 9 14 14 C 1.57641 * 116.13918 * 161.44260 * 12 10 9 15 15 N 1.48558 * 104.60060 * 87.43004 * 14 12 10 16 16 C 1.46903 * 111.00044 * 200.32349 * 15 14 12 17 17 C 1.50702 * 109.47070 * 285.41631 * 16 15 14 18 18 O 1.21292 * 120.00157 * 0.02562 * 17 16 15 19 19 N 1.34773 * 119.99983 * 179.97438 * 17 16 15 20 20 C 1.37094 * 120.00314 * 180.02562 * 19 17 16 21 21 H 1.08002 * 119.99870 * 0.02562 * 20 19 17 22 22 C 1.38946 * 120.00451 * 180.02562 * 20 19 17 23 23 N 1.31411 * 120.00142 * 179.97438 * 22 20 19 24 24 Si 1.86798 * 119.99917 * 0.02562 * 22 20 19 25 25 H 1.48502 * 109.47429 * 89.99942 * 24 22 20 26 26 H 1.48503 * 109.47241 * 209.99934 * 24 22 20 27 27 H 1.48501 * 109.47346 * 329.99851 * 24 22 20 28 28 C 1.48561 * 104.22142 * 319.88279 * 15 14 12 29 29 C 1.53001 * 117.44436 * 155.11896 * 10 9 7 30 30 H 1.08995 * 119.52636 * 355.90156 * 29 10 9 31 31 N 1.30835 * 108.19693 * 359.60144 * 5 4 3 32 32 H 1.08993 * 109.47210 * 270.02507 * 1 2 3 33 33 H 1.09002 * 109.47089 * 30.02026 * 1 2 3 34 34 H 1.09004 * 109.47501 * 150.02260 * 1 2 3 35 35 H 1.08005 * 126.12705 * 0.02562 * 3 2 1 36 36 H 1.08000 * 126.03790 * 180.27815 * 4 3 2 37 37 H 1.09003 * 109.46601 * 4.71843 * 6 5 4 38 38 H 1.08993 * 109.46922 * 244.72142 * 6 5 4 39 39 H 0.97001 * 120.00485 * 0.02562 * 9 7 6 40 40 H 1.09002 * 110.95059 * 328.37607 * 14 12 10 41 41 H 1.08998 * 109.97213 * 205.99624 * 14 12 10 42 42 H 1.08996 * 109.47192 * 45.41979 * 16 15 14 43 43 H 1.08996 * 109.46712 * 165.42115 * 16 15 14 44 44 H 0.97003 * 119.99853 * 0.02562 * 19 17 16 45 45 H 0.97010 * 119.99829 * 179.97438 * 23 22 20 46 46 H 1.09002 * 110.40496 * 280.70271 * 28 15 14 47 47 H 1.08993 * 110.40877 * 158.26371 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0911 0.0000 4 6 3.5437 0.6664 0.0056 5 6 3.5346 -0.7323 -0.0001 6 6 4.7496 -1.6239 0.0004 7 6 4.6720 -2.5781 1.1642 8 8 3.7233 -2.5384 1.9188 9 7 5.6564 -3.4762 1.3659 10 6 5.5839 -4.3998 2.5008 11 1 4.6345 -4.4123 3.0362 12 6 6.8585 -4.6112 3.3204 13 1 7.7504 -4.0300 3.0862 14 6 6.6649 -5.2230 4.7603 15 7 6.6859 -6.6932 4.5484 16 6 6.0531 -7.3962 5.6724 17 6 6.9797 -7.3799 6.8608 18 8 8.0607 -6.8357 6.7796 19 7 6.6069 -7.9690 8.0142 20 6 7.4496 -7.9537 9.0955 21 1 8.4121 -7.4691 9.0231 22 6 7.0654 -8.5615 10.2844 23 7 7.8734 -8.5472 11.3207 24 14 5.4010 -9.4002 10.4094 25 1 5.5337 -10.8252 10.0130 26 1 4.9097 -9.3193 11.8084 27 1 4.4363 -8.7229 9.5061 28 6 5.9150 -6.8923 3.2941 29 6 6.3448 -5.7220 2.3836 30 1 6.8542 -5.9679 1.4519 31 7 2.2891 -1.1328 -0.0001 32 1 -0.3633 0.0004 1.0276 33 1 -0.3633 0.8898 -0.5142 34 1 -0.3634 -0.8902 -0.5135 35 1 1.9282 2.1193 0.0004 36 1 4.4211 1.2961 0.0113 37 1 5.6481 -1.0134 0.0903 38 1 4.7859 -2.1888 -0.9310 39 1 6.4150 -3.5082 0.7623 40 1 5.7118 -4.9144 5.1899 41 1 7.4882 -4.9203 5.4072 42 1 5.1192 -6.8983 5.9330 43 1 5.8474 -8.4276 5.3863 44 1 5.7422 -8.4039 8.0793 45 1 7.6050 -8.9713 12.1509 46 1 4.8446 -6.8449 3.4943 47 1 6.1751 -7.8462 2.8355 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001114246134.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:17:32 Heat of formation + Delta-G solvation = 67.216455 kcal Electronic energy + Delta-G solvation = -28848.252961 eV Core-core repulsion = 24648.780562 eV Total energy + Delta-G solvation = -4199.472399 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.52684 -40.36739 -39.20229 -38.03757 -35.19870 -34.19266 -33.88311 -32.71512 -31.60830 -30.79283 -29.96835 -28.23783 -27.69217 -26.17123 -24.53809 -22.61899 -21.51315 -21.12442 -21.05306 -20.30342 -19.77700 -19.27693 -18.21534 -17.39695 -17.26526 -16.87833 -15.89906 -15.78303 -15.47278 -15.23598 -14.96060 -14.74587 -14.50461 -14.19418 -13.93447 -13.63473 -13.48937 -13.29852 -13.22262 -12.94026 -12.85990 -12.74944 -12.62135 -12.39689 -12.28680 -12.09120 -11.76634 -11.39958 -11.34803 -11.10743 -10.88423 -10.84271 -10.56264 -10.15104 -10.07364 -9.94032 -9.54289 -9.51934 -8.92690 -8.86480 -8.59217 -8.14369 -8.06791 -6.27343 -3.78467 1.59483 2.18176 2.33327 2.37845 2.86956 3.05820 3.09837 3.17822 3.60269 3.78509 3.99877 4.04863 4.13840 4.37277 4.44044 4.50153 4.60627 4.65032 4.72447 4.76081 4.82573 4.88968 4.99628 5.01996 5.09563 5.17427 5.24697 5.31614 5.45819 5.47874 5.59402 5.64468 5.67691 5.72693 5.74324 5.93331 6.00890 6.02232 6.27525 6.30493 6.35852 6.68559 6.99829 7.10928 7.21275 7.43558 7.62368 7.99669 8.18416 8.64595 8.99472 9.46694 9.88322 10.85868 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.017464 B = 0.001683 C = 0.001607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.877155 B =16630.899274 C =17418.855226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.376 5.376 3 C 0.050 3.950 4 C -0.266 4.266 5 C 0.080 3.920 6 C -0.057 4.057 7 C 0.519 3.481 8 O -0.518 6.518 9 N -0.702 5.702 10 C 0.104 3.896 11 H 0.132 0.868 12 C -0.161 4.161 13 H 0.123 0.877 14 C 0.068 3.932 15 N -0.483 5.483 16 C 0.031 3.969 17 C 0.455 3.545 18 O -0.558 6.558 19 N -0.593 5.593 20 C -0.303 4.303 21 H 0.120 0.880 22 C 0.041 3.959 23 N -0.883 5.883 24 Si 0.879 3.121 25 H -0.271 1.271 26 H -0.277 1.277 27 H -0.270 1.270 28 C 0.061 3.939 29 C -0.169 4.169 30 H 0.118 0.882 31 N -0.263 5.263 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.173 0.827 36 H 0.148 0.852 37 H 0.115 0.885 38 H 0.111 0.889 39 H 0.402 0.598 40 H 0.044 0.956 41 H 0.102 0.898 42 H 0.053 0.947 43 H 0.092 0.908 44 H 0.370 0.630 45 H 0.273 0.727 46 H 0.045 0.955 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.861 16.492 -28.249 35.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.159 5.159 3 C -0.096 4.096 4 C -0.295 4.295 5 C -0.088 4.088 6 C -0.098 4.098 7 C 0.304 3.696 8 O -0.392 6.392 9 N -0.353 5.353 10 C -0.002 4.002 11 H 0.150 0.850 12 C -0.181 4.181 13 H 0.141 0.859 14 C -0.060 4.060 15 N -0.207 5.207 16 C -0.101 4.101 17 C 0.240 3.760 18 O -0.439 6.439 19 N -0.233 5.233 20 C -0.432 4.432 21 H 0.137 0.863 22 C -0.162 4.162 23 N -0.523 5.523 24 Si 0.706 3.294 25 H -0.196 1.196 26 H -0.202 1.202 27 H -0.195 1.195 28 C -0.067 4.067 29 C -0.189 4.189 30 H 0.136 0.864 31 N -0.086 5.086 32 H 0.093 0.907 33 H 0.105 0.895 34 H 0.107 0.893 35 H 0.191 0.809 36 H 0.166 0.834 37 H 0.133 0.867 38 H 0.129 0.871 39 H 0.237 0.763 40 H 0.062 0.938 41 H 0.121 0.879 42 H 0.071 0.929 43 H 0.110 0.890 44 H 0.202 0.798 45 H 0.083 0.917 46 H 0.064 0.936 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -13.220 15.637 -27.556 34.331 hybrid contribution -1.222 0.272 0.137 1.259 sum -14.442 15.909 -27.420 34.836 Atomic orbital electron populations 1.21855 0.74213 1.04346 1.03555 1.48537 1.06703 1.03841 1.56772 1.22510 0.91135 0.93505 1.02415 1.21344 0.97209 0.93975 1.16985 1.21479 0.92684 0.93394 1.01218 1.19997 0.95409 0.96007 0.98415 1.20401 0.82125 0.80751 0.86297 1.90767 1.32139 1.69698 1.46579 1.45264 1.24681 1.35734 1.29582 1.21815 0.97555 0.90634 0.90225 0.85028 1.24670 0.98468 1.01509 0.93470 0.85900 1.23257 1.01916 0.86978 0.93835 1.65253 1.47215 1.07206 1.01007 1.22096 0.95779 1.00196 0.92031 1.19587 0.88619 0.84211 0.83550 1.90552 1.23233 1.47069 1.83025 1.42204 1.17883 1.51559 1.11654 1.19423 1.01178 1.34537 0.88040 0.86283 1.25025 0.98009 0.97809 0.95344 1.69625 1.36099 1.43955 1.02605 0.86678 0.83813 0.80423 0.78508 1.19627 1.20230 1.19547 1.22656 0.95955 0.97621 0.90466 1.23770 1.04799 0.89629 1.00689 0.86413 1.77422 1.01175 1.07330 1.22633 0.90655 0.89494 0.89290 0.80946 0.83415 0.86700 0.87122 0.76338 0.93757 0.87935 0.92912 0.89005 0.79760 0.91674 0.93637 0.89338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.52 11.47 59.84 0.69 1.21 16 2 N -0.38 -3.51 4.01 -68.17 -0.27 -3.78 16 3 C 0.05 0.38 11.49 -17.23 -0.20 0.18 16 4 C -0.27 -2.23 10.72 -40.01 -0.43 -2.66 16 5 C 0.08 0.82 6.02 -82.41 -0.50 0.33 16 6 C -0.06 -0.41 6.28 -29.04 -0.18 -0.59 16 7 C 0.52 5.59 7.82 -10.99 -0.09 5.50 16 8 O -0.52 -8.19 15.13 5.55 0.08 -8.10 16 9 N -0.70 -6.14 5.56 -53.80 -0.30 -6.43 16 10 C 0.10 1.16 5.93 -67.93 -0.40 0.76 16 11 H 0.13 1.77 7.40 -51.93 -0.38 1.39 16 12 C -0.16 -1.95 7.32 -87.49 -0.64 -2.59 16 13 H 0.12 1.35 8.14 -51.93 -0.42 0.93 16 14 C 0.07 1.07 5.79 -0.37 0.00 1.07 16 15 N -0.48 -7.90 4.98 -229.20 -1.14 -9.04 16 16 C 0.03 0.53 5.32 -4.97 -0.03 0.51 16 17 C 0.46 10.55 7.63 -10.99 -0.08 10.47 16 18 O -0.56 -15.15 14.80 5.55 0.08 -15.07 16 19 N -0.59 -14.40 5.09 -10.96 -0.06 -14.46 16 20 C -0.30 -8.70 10.16 -14.94 -0.15 -8.85 16 21 H 0.12 3.89 7.39 -52.49 -0.39 3.51 16 22 C 0.04 1.13 5.50 -17.47 -0.10 1.04 16 23 N -0.88 -26.10 13.96 55.50 0.77 -25.33 16 24 Si 0.88 19.71 27.74 -169.99 -4.71 15.00 16 25 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 26 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 27 H -0.27 -5.55 6.52 56.52 0.37 -5.18 16 28 C 0.06 0.76 6.26 -2.18 -0.01 0.74 16 29 C -0.17 -1.82 6.97 -89.31 -0.62 -2.44 16 30 H 0.12 1.05 8.14 -51.93 -0.42 0.63 16 31 N -0.26 -3.28 11.92 33.67 0.40 -2.87 16 32 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 34 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.17 0.61 8.06 -52.48 -0.42 0.19 16 36 H 0.15 0.86 8.06 -52.49 -0.42 0.44 16 37 H 0.11 0.47 8.12 -51.93 -0.42 0.05 16 38 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.40 2.14 8.83 -40.82 -0.36 1.78 16 40 H 0.04 0.69 7.75 -51.93 -0.40 0.29 16 41 H 0.10 1.91 7.23 -51.93 -0.38 1.53 16 42 H 0.05 0.82 7.77 -51.93 -0.40 0.42 16 43 H 0.09 1.37 8.08 -51.93 -0.42 0.95 16 44 H 0.37 7.91 5.76 -40.82 -0.24 7.67 16 45 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 46 H 0.05 0.54 8.00 -51.93 -0.42 0.12 16 47 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 396.32 15.07 5.97 5.97 Total: -1.00 -39.90 396.32 -8.69 -48.59 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: -6.78 Total: 10.87 kcal Atomic # 6 Polarization: 7.41 SS G_CDS: -2.74 Total: 4.66 kcal Atomic # 7 Polarization: -61.32 SS G_CDS: -0.59 Total: -61.92 kcal Atomic # 8 Polarization: -23.34 SS G_CDS: 0.17 Total: -23.17 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -4.71 Total: 15.00 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -39.90 -8.69 -48.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114246134.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.806 kcal (2) G-P(sol) polarization free energy of solvation -39.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds