Wall clock time and date at job start Wed Apr 1 2020 05:17:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34941 * 126.04185 * 2 1 4 4 C 1.35319 * 107.74849 * 179.75158 * 3 2 1 5 5 C 1.39872 * 107.92062 * 0.39547 * 4 3 2 6 6 C 1.50698 * 125.90127 * 179.86386 * 5 4 3 7 7 C 1.50698 * 109.46944 * 124.71402 * 6 5 4 8 8 O 1.21283 * 120.00472 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99538 * 179.97438 * 7 6 5 10 10 C 1.46499 * 119.99665 * 179.72653 * 9 7 6 11 11 H 1.09006 * 115.51803 * 9.69516 * 10 9 7 12 12 C 1.53005 * 117.44199 * 224.27588 * 10 9 7 13 13 H 1.08993 * 119.52823 * 4.09487 * 12 10 9 14 14 C 1.57641 * 116.13918 * 161.44260 * 12 10 9 15 15 N 1.48558 * 104.60060 * 87.43004 * 14 12 10 16 16 C 1.46903 * 111.00044 * 200.32349 * 15 14 12 17 17 C 1.50702 * 109.47070 * 285.41631 * 16 15 14 18 18 O 1.21292 * 120.00157 * 0.02562 * 17 16 15 19 19 N 1.34773 * 119.99983 * 179.97438 * 17 16 15 20 20 C 1.37094 * 120.00314 * 180.02562 * 19 17 16 21 21 H 1.08002 * 119.99870 * 0.02562 * 20 19 17 22 22 C 1.38946 * 120.00451 * 180.02562 * 20 19 17 23 23 N 1.31411 * 120.00142 * 179.97438 * 22 20 19 24 24 Si 1.86798 * 119.99917 * 0.02562 * 22 20 19 25 25 H 1.48502 * 109.47429 * 89.99942 * 24 22 20 26 26 H 1.48503 * 109.47241 * 209.99934 * 24 22 20 27 27 H 1.48501 * 109.47346 * 329.99851 * 24 22 20 28 28 C 1.48561 * 104.22142 * 319.88279 * 15 14 12 29 29 C 1.53001 * 117.44436 * 155.11896 * 10 9 7 30 30 H 1.08995 * 119.52636 * 355.90156 * 29 10 9 31 31 N 1.30835 * 108.19693 * 359.60144 * 5 4 3 32 32 H 1.08993 * 109.47210 * 270.02507 * 1 2 3 33 33 H 1.09002 * 109.47089 * 30.02026 * 1 2 3 34 34 H 1.09004 * 109.47501 * 150.02260 * 1 2 3 35 35 H 1.08005 * 126.12705 * 0.02562 * 3 2 1 36 36 H 1.08000 * 126.03790 * 180.27815 * 4 3 2 37 37 H 1.09003 * 109.46601 * 4.71843 * 6 5 4 38 38 H 1.08993 * 109.46922 * 244.72142 * 6 5 4 39 39 H 0.97001 * 120.00485 * 0.02562 * 9 7 6 40 40 H 1.09002 * 110.95059 * 328.37607 * 14 12 10 41 41 H 1.08998 * 109.97213 * 205.99624 * 14 12 10 42 42 H 1.08996 * 109.47192 * 45.41979 * 16 15 14 43 43 H 1.08996 * 109.46712 * 165.42115 * 16 15 14 44 44 H 0.97003 * 119.99853 * 0.02562 * 19 17 16 45 45 H 0.97010 * 119.99829 * 179.97438 * 23 22 20 46 46 H 1.09002 * 110.40496 * 280.70271 * 28 15 14 47 47 H 1.08993 * 110.40877 * 158.26371 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0911 0.0000 4 6 3.5437 0.6664 0.0056 5 6 3.5346 -0.7323 -0.0001 6 6 4.7496 -1.6239 0.0004 7 6 4.6720 -2.5781 1.1642 8 8 3.7233 -2.5384 1.9188 9 7 5.6564 -3.4762 1.3659 10 6 5.5839 -4.3998 2.5008 11 1 4.6345 -4.4123 3.0362 12 6 6.8585 -4.6112 3.3204 13 1 7.7504 -4.0300 3.0862 14 6 6.6649 -5.2230 4.7603 15 7 6.6859 -6.6932 4.5484 16 6 6.0531 -7.3962 5.6724 17 6 6.9797 -7.3799 6.8608 18 8 8.0607 -6.8357 6.7796 19 7 6.6069 -7.9690 8.0142 20 6 7.4496 -7.9537 9.0955 21 1 8.4121 -7.4691 9.0231 22 6 7.0654 -8.5615 10.2844 23 7 7.8734 -8.5472 11.3207 24 14 5.4010 -9.4002 10.4094 25 1 5.5337 -10.8252 10.0130 26 1 4.9097 -9.3193 11.8084 27 1 4.4363 -8.7229 9.5061 28 6 5.9150 -6.8923 3.2941 29 6 6.3448 -5.7220 2.3836 30 1 6.8542 -5.9679 1.4519 31 7 2.2891 -1.1328 -0.0001 32 1 -0.3633 0.0004 1.0276 33 1 -0.3633 0.8898 -0.5142 34 1 -0.3634 -0.8902 -0.5135 35 1 1.9282 2.1193 0.0004 36 1 4.4211 1.2961 0.0113 37 1 5.6481 -1.0134 0.0903 38 1 4.7859 -2.1888 -0.9310 39 1 6.4150 -3.5082 0.7623 40 1 5.7118 -4.9144 5.1899 41 1 7.4882 -4.9203 5.4072 42 1 5.1192 -6.8983 5.9330 43 1 5.8474 -8.4276 5.3863 44 1 5.7422 -8.4039 8.0793 45 1 7.6050 -8.9713 12.1509 46 1 4.8446 -6.8449 3.4943 47 1 6.1751 -7.8462 2.8355 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001114246134.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:17:31 Heat of formation + Delta-G solvation = 33.786254 kcal Electronic energy + Delta-G solvation = -28849.702604 eV Core-core repulsion = 24648.780562 eV Total energy + Delta-G solvation = -4200.922042 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.12436 -41.36895 -40.38715 -39.62549 -36.40077 -35.81685 -34.78330 -33.84553 -33.60757 -31.35590 -30.61844 -29.33914 -29.10695 -26.84476 -26.25438 -23.78442 -22.18996 -22.02687 -21.90474 -21.35407 -21.16535 -20.45830 -20.15641 -18.12762 -18.01899 -17.75722 -17.50226 -16.85993 -16.41997 -16.35167 -16.29198 -16.07056 -15.52928 -15.12099 -14.94836 -14.85323 -14.67338 -14.48703 -14.37314 -14.04256 -13.94908 -13.76634 -13.51657 -13.34173 -13.18412 -13.08313 -12.97203 -12.89686 -12.50474 -12.42507 -12.38237 -11.99690 -11.89060 -11.51722 -11.50608 -11.11312 -10.96070 -10.42036 -10.24698 -10.19126 -9.78077 -9.44588 -9.39875 -8.41797 -6.02407 1.00846 1.29224 1.34397 1.43027 1.56654 1.66815 1.74916 1.95157 2.13793 2.22036 2.60055 2.75293 3.13351 3.23642 3.52242 3.58991 3.66491 3.81009 3.89472 3.92821 4.03253 4.14432 4.17913 4.29270 4.32267 4.40052 4.42578 4.43106 4.49962 4.55512 4.60713 4.66944 4.81194 4.84985 4.91976 4.92541 5.10934 5.13760 5.15935 5.47238 5.52122 5.72323 5.79210 5.87279 5.99424 6.21843 6.54131 6.59388 6.82692 6.87942 7.26828 7.39242 7.96717 8.75883 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.017464 B = 0.001683 C = 0.001607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.877155 B =16630.899274 C =17418.855226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.388 5.388 3 C 0.052 3.948 4 C -0.284 4.284 5 C 0.061 3.939 6 C -0.050 4.050 7 C 0.516 3.484 8 O -0.575 6.575 9 N -0.685 5.685 10 C 0.111 3.889 11 H 0.107 0.893 12 C -0.168 4.168 13 H 0.135 0.865 14 C 0.064 3.936 15 N -0.506 5.506 16 C 0.042 3.958 17 C 0.452 3.548 18 O -0.606 6.606 19 N -0.593 5.593 20 C -0.328 4.328 21 H 0.055 0.945 22 C -0.015 4.015 23 N -0.934 5.934 24 Si 0.964 3.036 25 H -0.255 1.255 26 H -0.275 1.275 27 H -0.235 1.235 28 C 0.059 3.941 29 C -0.148 4.148 30 H 0.148 0.852 31 N -0.322 5.322 32 H 0.074 0.926 33 H 0.122 0.878 34 H 0.084 0.916 35 H 0.211 0.789 36 H 0.170 0.830 37 H 0.150 0.850 38 H 0.136 0.864 39 H 0.422 0.578 40 H 0.040 0.960 41 H 0.061 0.939 42 H 0.076 0.924 43 H 0.126 0.874 44 H 0.389 0.611 45 H 0.279 0.721 46 H 0.056 0.944 47 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.201 16.442 -31.277 38.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.170 5.170 3 C -0.094 4.094 4 C -0.313 4.313 5 C -0.105 4.105 6 C -0.091 4.091 7 C 0.304 3.696 8 O -0.453 6.453 9 N -0.336 5.336 10 C 0.004 3.996 11 H 0.125 0.875 12 C -0.188 4.188 13 H 0.153 0.847 14 C -0.064 4.064 15 N -0.231 5.231 16 C -0.089 4.089 17 C 0.240 3.760 18 O -0.489 6.489 19 N -0.235 5.235 20 C -0.457 4.457 21 H 0.073 0.927 22 C -0.213 4.213 23 N -0.575 5.575 24 Si 0.784 3.216 25 H -0.179 1.179 26 H -0.200 1.200 27 H -0.158 1.158 28 C -0.068 4.068 29 C -0.168 4.168 30 H 0.165 0.835 31 N -0.145 5.145 32 H 0.093 0.907 33 H 0.140 0.860 34 H 0.102 0.898 35 H 0.228 0.772 36 H 0.188 0.812 37 H 0.168 0.832 38 H 0.154 0.846 39 H 0.261 0.739 40 H 0.058 0.942 41 H 0.080 0.920 42 H 0.094 0.906 43 H 0.143 0.857 44 H 0.224 0.776 45 H 0.088 0.912 46 H 0.074 0.926 47 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -15.541 15.582 -30.645 37.728 hybrid contribution -0.394 0.395 1.072 1.209 sum -15.935 15.977 -29.573 37.199 Atomic orbital electron populations 1.22120 0.72615 1.05884 1.03995 1.48880 1.07871 1.03705 1.56593 1.23207 0.90929 0.94698 1.00580 1.21757 0.98571 0.93583 1.17400 1.22051 0.92942 0.94823 1.00695 1.20158 0.95749 0.95592 0.97634 1.21069 0.81278 0.80809 0.86446 1.90748 1.34452 1.71320 1.48822 1.45109 1.25021 1.34617 1.28902 1.21514 0.95864 0.91641 0.90607 0.87499 1.24523 0.99632 1.03103 0.91542 0.84731 1.23118 0.99970 0.87590 0.95699 1.65188 1.48720 1.07088 1.02085 1.22014 0.94507 1.02701 0.89720 1.20827 0.88731 0.81853 0.84589 1.90532 1.25845 1.48511 1.84039 1.42033 1.18122 1.52413 1.10960 1.18999 1.00257 1.35823 0.90599 0.92664 1.26094 1.03423 0.97886 0.93928 1.69806 1.39097 1.45018 1.03561 0.85373 0.77358 0.79559 0.79277 1.17936 1.19981 1.15808 1.22776 0.96129 0.99106 0.88775 1.23867 1.03513 0.88479 1.00893 0.83482 1.77321 1.02587 1.09642 1.24932 0.90732 0.85993 0.89762 0.77195 0.81206 0.83194 0.84589 0.73937 0.94217 0.92025 0.90592 0.85654 0.77578 0.91154 0.92627 0.87457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.89 11.47 127.77 1.47 2.36 16 2 N -0.39 -6.97 4.01 -369.57 -1.48 -8.45 16 3 C 0.05 0.69 11.49 83.54 0.96 1.65 16 4 C -0.28 -4.30 10.72 21.99 0.24 -4.07 16 5 C 0.06 1.21 6.02 43.10 0.26 1.47 16 6 C -0.05 -0.62 6.28 29.10 0.18 -0.44 16 7 C 0.52 10.51 7.82 87.66 0.69 11.19 16 8 O -0.58 -18.45 15.13 -3.04 -0.05 -18.50 16 9 N -0.69 -10.47 5.56 -442.52 -2.46 -12.94 16 10 C 0.11 2.31 5.93 44.99 0.27 2.58 16 11 H 0.11 2.86 7.40 -2.38 -0.02 2.84 16 12 C -0.17 -3.90 7.32 -8.77 -0.06 -3.96 16 13 H 0.13 2.79 8.14 -2.39 -0.02 2.77 16 14 C 0.06 2.07 5.79 87.63 0.51 2.58 16 15 N -0.51 -16.01 4.98 -879.06 -4.38 -20.39 16 16 C 0.04 1.38 5.32 85.56 0.46 1.83 16 17 C 0.45 21.32 7.63 87.66 0.67 21.98 16 18 O -0.61 -34.68 14.80 -3.07 -0.05 -34.73 16 19 N -0.59 -28.98 5.09 -306.99 -1.56 -30.54 16 20 C -0.33 -19.68 10.16 84.04 0.85 -18.83 16 21 H 0.06 3.94 7.39 -2.91 -0.02 3.92 16 22 C -0.01 -0.84 5.50 84.93 0.47 -0.37 16 23 N -0.93 -57.29 13.96 21.66 0.30 -56.99 16 24 Si 0.96 39.85 27.74 68.60 1.90 41.75 16 25 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 26 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 27 H -0.23 -8.29 6.52 99.48 0.65 -7.64 16 28 C 0.06 1.30 6.26 86.45 0.54 1.84 16 29 C -0.15 -2.76 6.97 -9.94 -0.07 -2.83 16 30 H 0.15 1.95 8.14 -2.39 -0.02 1.93 16 31 N -0.32 -8.01 11.92 -47.39 -0.56 -8.58 16 32 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.12 0.22 8.14 -2.39 -0.02 0.20 16 34 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 35 H 0.21 0.84 8.06 -2.91 -0.02 0.82 16 36 H 0.17 1.56 8.06 -2.91 -0.02 1.54 16 37 H 0.15 0.72 8.12 -2.39 -0.02 0.70 16 38 H 0.14 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.42 3.04 8.83 -92.71 -0.82 2.23 16 40 H 0.04 1.27 7.75 -2.39 -0.02 1.25 16 41 H 0.06 2.46 7.23 -2.39 -0.02 2.44 16 42 H 0.08 2.18 7.77 -2.39 -0.02 2.16 16 43 H 0.13 3.30 8.08 -2.39 -0.02 3.28 16 44 H 0.39 15.80 5.76 -92.71 -0.53 15.27 16 45 H 0.28 15.62 8.31 -92.70 -0.77 14.85 16 46 H 0.06 1.14 8.00 -2.39 -0.02 1.12 16 47 H 0.11 1.99 8.14 -2.39 -0.02 1.98 16 Total: -1.00 -96.75 396.32 -1.31 -98.06 By element: Atomic # 1 Polarization: 34.71 SS G_CDS: -0.39 Total: 34.32 kcal Atomic # 6 Polarization: 9.57 SS G_CDS: 7.42 Total: 16.98 kcal Atomic # 7 Polarization: -127.74 SS G_CDS: -10.15 Total: -137.88 kcal Atomic # 8 Polarization: -53.13 SS G_CDS: -0.09 Total: -53.23 kcal Atomic # 14 Polarization: 39.85 SS G_CDS: 1.90 Total: 41.75 kcal Total: -96.75 -1.31 -98.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114246134.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.846 kcal (2) G-P(sol) polarization free energy of solvation -96.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.060 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds