Wall clock time and date at job start Wed Apr 1 2020 05:07:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21282 * 119.99977 * 2 1 4 4 N 1.34773 * 120.00045 * 180.02562 * 2 1 3 5 5 C 1.46506 * 120.00119 * 179.72304 * 4 2 1 6 6 H 1.09000 * 109.47228 * 180.27067 * 5 4 2 7 7 C 1.52999 * 109.46909 * 300.27375 * 5 4 2 8 8 C 1.50695 * 109.47207 * 294.99955 * 7 5 4 9 9 C 1.34667 * 126.59190 * 85.02251 * 8 7 5 10 10 N 1.34127 * 108.01981 * 179.97438 * 9 8 7 11 11 C 1.30500 * 109.25598 * 0.02562 * 10 9 8 12 12 N 1.35040 * 108.70136 * 359.76531 * 11 10 9 13 13 H 0.96996 * 126.39940 * 180.27018 * 12 11 10 14 14 C 1.50702 * 109.46852 * 60.26888 * 5 4 2 15 15 O 1.21277 * 120.00280 * 340.00814 * 14 5 4 16 16 N 1.34782 * 119.99687 * 159.99668 * 14 5 4 17 17 C 1.46503 * 119.99694 * 180.02562 * 16 14 5 18 18 H 1.08993 * 115.51837 * 350.41596 * 17 16 14 19 19 C 1.53003 * 117.43792 * 205.00521 * 17 16 14 20 20 H 1.09000 * 119.54594 * 4.11806 * 19 17 16 21 21 C 1.54389 * 118.12080 * 159.21425 * 19 17 16 22 22 N 1.48147 * 104.61806 * 87.18793 * 21 19 17 23 23 C 1.36944 * 127.83795 * 140.41319 * 22 21 19 24 24 H 1.08001 * 119.99619 * 195.57292 * 23 22 21 25 25 C 1.38807 * 119.99656 * 15.57575 * 23 22 21 26 26 N 1.31616 * 120.00475 * 9.09776 * 25 23 22 27 27 Si 1.86803 * 119.99647 * 189.10045 * 25 23 22 28 28 H 1.48498 * 109.47251 * 359.97438 * 27 25 23 29 29 H 1.48499 * 109.47101 * 119.99994 * 27 25 23 30 30 H 1.48505 * 109.47014 * 239.99839 * 27 25 23 31 31 C 1.48144 * 104.32518 * 320.41696 * 22 21 19 32 32 C 1.52998 * 117.43945 * 135.76762 * 17 16 14 33 33 H 1.09002 * 119.53966 * 355.88127 * 32 17 16 34 34 H 1.09003 * 109.47034 * 240.00014 * 1 2 3 35 35 H 1.08999 * 109.47414 * 359.97438 * 1 2 3 36 36 H 1.09002 * 109.47241 * 119.99960 * 1 2 3 37 37 H 0.97003 * 120.00260 * 359.97438 * 4 2 1 38 38 H 1.09001 * 109.46909 * 54.99828 * 7 5 4 39 39 H 1.09000 * 109.46869 * 174.99607 * 7 5 4 40 40 H 1.07995 * 125.99215 * 359.96798 * 9 8 7 41 41 H 1.08005 * 125.64662 * 180.02562 * 11 10 9 42 42 H 0.96996 * 119.99695 * 0.02562 * 16 14 5 43 43 H 1.09000 * 110.41130 * 205.97385 * 21 19 17 44 44 H 1.09002 * 110.40724 * 328.40236 * 21 19 17 45 45 H 0.96999 * 120.00315 * 180.02562 * 26 25 23 46 46 H 1.08996 * 110.40917 * 158.36744 * 31 22 21 47 47 H 1.09002 * 110.40685 * 280.79867 * 31 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.6459 -1.1672 -0.0067 6 1 4.0092 -2.1948 -0.0110 7 6 4.1506 -0.4424 -1.2560 8 6 3.7468 -1.2172 -2.4838 9 6 2.5693 -1.1371 -3.1324 10 7 2.6090 -1.9851 -4.1708 11 6 3.7662 -2.5882 -4.1900 12 7 4.5082 -2.1342 -3.1570 13 1 5.4114 -2.4078 -2.9331 14 6 4.1533 -0.4601 1.2237 15 8 3.4274 0.2996 1.8293 16 7 5.4138 -0.6722 1.6511 17 6 5.9070 0.0147 2.8474 18 1 5.2585 0.7979 3.2400 19 6 7.4178 0.2239 2.9679 20 1 8.0691 -0.0752 2.1466 21 6 7.9258 1.3302 3.9174 22 7 8.0274 0.6703 5.2399 23 6 9.0043 0.8310 6.1860 24 1 9.0997 0.1166 6.9904 25 6 9.8718 1.9120 6.1113 26 7 9.6488 2.8760 5.2433 27 14 11.3557 1.9987 7.2426 28 1 11.3804 0.8004 8.1194 29 1 12.5969 2.0426 6.4285 30 1 11.2692 3.2223 8.0797 31 6 6.8326 -0.2030 5.3065 32 6 6.7027 -0.8134 3.8583 33 1 6.8212 -1.8854 3.7002 34 1 -0.3633 -0.5138 0.8900 35 1 -0.3634 1.0276 0.0005 36 1 -0.3634 -0.5138 -0.8900 37 1 1.6959 -2.0073 -0.0005 38 1 3.7158 0.5562 -1.2973 39 1 5.2371 -0.3643 -1.2166 40 1 1.7386 -0.5015 -2.8635 41 1 4.0801 -3.3249 -4.9147 42 1 5.9944 -1.2797 1.1665 43 1 8.9036 1.6883 3.5952 44 1 7.2128 2.1538 3.9574 45 1 10.2552 3.6312 5.1908 46 1 6.9856 -1.0018 6.0322 47 1 5.9489 0.3810 5.5634 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001114770529.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:07:26 Heat of formation + Delta-G solvation = 57.794944 kcal Electronic energy + Delta-G solvation = -30376.114352 eV Core-core repulsion = 26176.233406 eV Total energy + Delta-G solvation = -4199.880947 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 2.51 seconds Orbital eigenvalues (eV) -42.42814 -40.57292 -39.14757 -37.98075 -35.38598 -34.48028 -33.12198 -32.68096 -32.11183 -30.36938 -29.97991 -28.04006 -27.03795 -25.76966 -24.65783 -22.09479 -21.89457 -21.33922 -20.92557 -20.48546 -19.75920 -19.31490 -18.23366 -17.73527 -17.17474 -16.79291 -16.31853 -15.76686 -15.31142 -15.07791 -14.77280 -14.74042 -14.69668 -14.15491 -13.73962 -13.71883 -13.58753 -13.33562 -13.06565 -12.85151 -12.75851 -12.74194 -12.33473 -12.23913 -11.98833 -11.50138 -11.47936 -11.00357 -10.86888 -10.40509 -10.38261 -10.35085 -10.23536 -10.17293 -10.11000 -9.76233 -9.74255 -9.28941 -9.12137 -8.76466 -8.65856 -8.33257 -6.89337 -5.81921 -3.16506 1.63799 2.46728 2.61889 2.79253 2.82041 2.92723 3.25823 3.36322 3.42070 3.44672 4.25503 4.29224 4.39929 4.44776 4.48704 4.61284 4.76238 4.84164 4.85700 5.07042 5.14603 5.16806 5.23030 5.30572 5.34335 5.37540 5.55313 5.62613 5.68883 5.70995 5.83809 5.88044 6.10976 6.16215 6.23422 6.39163 6.48811 6.66264 6.79050 6.86190 6.99093 7.32108 7.33164 7.51164 7.53489 7.69482 7.71258 8.17345 8.17968 8.32346 9.08506 9.71283 10.48189 11.32425 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.018429 B = 0.002162 C = 0.002031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.996761 B =12947.266271 C =13784.449254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.516 3.484 3 O -0.511 6.511 4 N -0.719 5.719 5 C 0.145 3.855 6 H 0.103 0.897 7 C -0.060 4.060 8 C -0.015 4.015 9 C -0.012 4.012 10 N -0.494 5.494 11 C 0.182 3.818 12 N -0.568 5.568 13 H 0.419 0.581 14 C 0.501 3.499 15 O -0.501 6.501 16 N -0.700 5.700 17 C 0.097 3.903 18 H 0.131 0.869 19 C -0.179 4.179 20 H 0.100 0.900 21 C 0.185 3.815 22 N -0.593 5.593 23 C -0.227 4.227 24 H 0.078 0.922 25 C -0.006 4.006 26 N -0.914 5.914 27 Si 0.913 3.087 28 H -0.278 1.278 29 H -0.289 1.289 30 H -0.289 1.289 31 C 0.158 3.842 32 C -0.186 4.186 33 H 0.105 0.895 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.085 0.915 37 H 0.404 0.596 38 H 0.118 0.882 39 H 0.084 0.916 40 H 0.163 0.837 41 H 0.207 0.793 42 H 0.394 0.606 43 H 0.091 0.909 44 H 0.026 0.974 45 H 0.254 0.746 46 H 0.050 0.950 47 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.890 -14.862 -18.197 27.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.303 3.697 3 O -0.385 6.385 4 N -0.373 5.373 5 C 0.035 3.965 6 H 0.121 0.879 7 C -0.100 4.100 8 C -0.131 4.131 9 C -0.160 4.160 10 N -0.213 5.213 11 C -0.102 4.102 12 N -0.172 5.172 13 H 0.257 0.743 14 C 0.284 3.716 15 O -0.373 6.373 16 N -0.350 5.350 17 C -0.009 4.009 18 H 0.148 0.852 19 C -0.200 4.200 20 H 0.118 0.882 21 C 0.059 3.941 22 N -0.316 5.316 23 C -0.355 4.355 24 H 0.095 0.905 25 C -0.203 4.203 26 N -0.560 5.560 27 Si 0.743 3.257 28 H -0.204 1.204 29 H -0.216 1.216 30 H -0.216 1.216 31 C 0.030 3.970 32 C -0.208 4.208 33 H 0.123 0.877 34 H 0.104 0.896 35 H 0.110 0.890 36 H 0.104 0.896 37 H 0.238 0.762 38 H 0.137 0.863 39 H 0.102 0.898 40 H 0.181 0.819 41 H 0.223 0.777 42 H 0.228 0.772 43 H 0.109 0.891 44 H 0.044 0.956 45 H 0.065 0.935 46 H 0.068 0.932 47 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -14.506 -13.429 -18.216 26.881 hybrid contribution 2.102 -0.911 0.838 2.439 sum -12.404 -14.340 -17.378 25.720 Atomic orbital electron populations 1.21902 0.91862 1.05533 1.03948 1.20652 0.90360 0.83409 0.75297 1.90738 1.70188 1.31084 1.46456 1.45604 1.04790 1.09376 1.77545 1.20715 0.82733 1.00246 0.92828 0.87862 1.20428 1.01868 1.00296 0.87379 1.21079 0.94152 0.98538 0.99296 1.22021 0.97498 1.02056 0.94461 1.70311 1.19687 1.10170 1.21161 1.24978 0.88724 1.02798 0.93709 1.43331 1.16387 1.33228 1.24236 0.74307 1.20677 0.82035 0.82888 0.85984 1.90776 1.55633 1.34497 1.56390 1.45377 1.13425 1.47298 1.28865 1.21871 0.93796 0.98435 0.86807 0.85154 1.24621 0.92016 1.02402 1.01011 0.88220 1.21071 1.00610 0.89754 0.82683 1.45133 1.22523 1.48680 1.15287 1.19030 1.06043 1.05951 1.04487 0.90465 1.24912 1.00427 0.95498 0.99469 1.69905 1.37813 1.10013 1.38295 0.86037 0.82392 0.77482 0.79776 1.20361 1.21623 1.21638 1.21692 0.90748 0.93387 0.91133 1.25093 1.04647 0.96243 0.94768 0.87684 0.89595 0.88973 0.89609 0.76176 0.86341 0.89757 0.81927 0.77656 0.77235 0.89098 0.95566 0.93540 0.93179 0.95191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.23 10.32 36.00 0.37 -0.86 16 2 C 0.52 5.61 6.70 -10.99 -0.07 5.54 16 3 O -0.51 -8.05 12.95 -17.89 -0.23 -8.28 16 4 N -0.72 -5.92 4.67 -54.93 -0.26 -6.17 16 5 C 0.15 1.25 3.00 -69.08 -0.21 1.04 16 6 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 7 C -0.06 -0.52 5.10 -27.89 -0.14 -0.66 16 8 C -0.02 -0.12 6.29 -81.60 -0.51 -0.63 16 9 C -0.01 -0.12 11.51 -17.81 -0.21 -0.32 16 10 N -0.49 -4.95 11.25 -14.67 -0.17 -5.12 16 11 C 0.18 1.20 13.04 -90.38 -1.18 0.02 16 12 N -0.57 -3.11 6.15 -10.30 -0.06 -3.18 16 13 H 0.42 1.01 8.96 -40.82 -0.37 0.65 16 14 C 0.50 6.62 6.82 -10.98 -0.07 6.55 16 15 O -0.50 -9.11 13.27 -17.89 -0.24 -9.34 16 16 N -0.70 -8.66 5.56 -53.80 -0.30 -8.96 16 17 C 0.10 1.60 5.92 -67.93 -0.40 1.20 16 18 H 0.13 2.57 7.40 -51.93 -0.38 2.18 16 19 C -0.18 -3.30 6.98 -89.22 -0.62 -3.92 16 20 H 0.10 1.65 8.14 -51.93 -0.42 1.23 16 21 C 0.18 4.44 5.70 -2.41 -0.01 4.43 16 22 N -0.59 -15.17 3.38 -166.73 -0.56 -15.73 16 23 C -0.23 -6.30 10.35 -15.06 -0.16 -6.45 16 24 H 0.08 2.07 7.85 -52.49 -0.41 1.66 16 25 C -0.01 -0.16 5.40 -17.43 -0.09 -0.26 16 26 N -0.91 -26.79 10.86 55.49 0.60 -26.19 16 27 Si 0.91 21.82 29.56 -169.99 -5.03 16.80 16 28 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 29 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 30 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 31 C 0.16 3.32 7.10 -0.57 0.00 3.32 16 32 C -0.19 -3.22 7.34 -87.38 -0.64 -3.86 16 33 H 0.11 1.59 8.14 -51.93 -0.42 1.16 16 34 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.09 0.72 8.12 -51.93 -0.42 0.30 16 36 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.40 2.14 8.83 -40.82 -0.36 1.78 16 38 H 0.12 1.41 6.03 -51.93 -0.31 1.10 16 39 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.16 1.53 8.06 -52.49 -0.42 1.10 16 41 H 0.21 0.57 8.06 -52.48 -0.42 0.15 16 42 H 0.39 3.51 8.83 -40.82 -0.36 3.15 16 43 H 0.09 2.42 6.51 -51.93 -0.34 2.08 16 44 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 46 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 47 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 390.78 15.07 5.89 5.89 Total: -1.00 -38.41 390.78 -11.05 -49.45 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: -6.74 Total: 5.70 kcal Atomic # 6 Polarization: 9.08 SS G_CDS: -3.96 Total: 5.13 kcal Atomic # 7 Polarization: -64.60 SS G_CDS: -0.75 Total: -65.35 kcal Atomic # 8 Polarization: -17.15 SS G_CDS: -0.47 Total: -17.62 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.03 Total: 16.80 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -38.41 -11.05 -49.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114770529.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.250 kcal (2) G-P(sol) polarization free energy of solvation -38.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.455 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.51 seconds