Wall clock time and date at job start Wed Apr 1 2020 05:07:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21282 * 119.99977 * 2 1 4 4 N 1.34773 * 120.00045 * 180.02562 * 2 1 3 5 5 C 1.46506 * 120.00119 * 179.72304 * 4 2 1 6 6 H 1.09000 * 109.47228 * 180.27067 * 5 4 2 7 7 C 1.52999 * 109.46909 * 300.27375 * 5 4 2 8 8 C 1.50695 * 109.47207 * 294.99955 * 7 5 4 9 9 C 1.34667 * 126.59190 * 85.02251 * 8 7 5 10 10 N 1.34127 * 108.01981 * 179.97438 * 9 8 7 11 11 C 1.30500 * 109.25598 * 0.02562 * 10 9 8 12 12 N 1.35040 * 108.70136 * 359.76531 * 11 10 9 13 13 H 0.96996 * 126.39940 * 180.27018 * 12 11 10 14 14 C 1.50702 * 109.46852 * 60.26888 * 5 4 2 15 15 O 1.21277 * 120.00280 * 340.00814 * 14 5 4 16 16 N 1.34782 * 119.99687 * 159.99668 * 14 5 4 17 17 C 1.46503 * 119.99694 * 180.02562 * 16 14 5 18 18 H 1.08993 * 115.51837 * 350.41596 * 17 16 14 19 19 C 1.53003 * 117.43792 * 205.00521 * 17 16 14 20 20 H 1.09000 * 119.54594 * 4.11806 * 19 17 16 21 21 C 1.54389 * 118.12080 * 159.21425 * 19 17 16 22 22 N 1.48147 * 104.61806 * 87.18793 * 21 19 17 23 23 C 1.36944 * 127.83795 * 140.41319 * 22 21 19 24 24 H 1.08001 * 119.99619 * 195.57292 * 23 22 21 25 25 C 1.38807 * 119.99656 * 15.57575 * 23 22 21 26 26 N 1.31616 * 120.00475 * 9.09776 * 25 23 22 27 27 Si 1.86803 * 119.99647 * 189.10045 * 25 23 22 28 28 H 1.48498 * 109.47251 * 359.97438 * 27 25 23 29 29 H 1.48499 * 109.47101 * 119.99994 * 27 25 23 30 30 H 1.48505 * 109.47014 * 239.99839 * 27 25 23 31 31 C 1.48144 * 104.32518 * 320.41696 * 22 21 19 32 32 C 1.52998 * 117.43945 * 135.76762 * 17 16 14 33 33 H 1.09002 * 119.53966 * 355.88127 * 32 17 16 34 34 H 1.09003 * 109.47034 * 240.00014 * 1 2 3 35 35 H 1.08999 * 109.47414 * 359.97438 * 1 2 3 36 36 H 1.09002 * 109.47241 * 119.99960 * 1 2 3 37 37 H 0.97003 * 120.00260 * 359.97438 * 4 2 1 38 38 H 1.09001 * 109.46909 * 54.99828 * 7 5 4 39 39 H 1.09000 * 109.46869 * 174.99607 * 7 5 4 40 40 H 1.07995 * 125.99215 * 359.96798 * 9 8 7 41 41 H 1.08005 * 125.64662 * 180.02562 * 11 10 9 42 42 H 0.96996 * 119.99695 * 0.02562 * 16 14 5 43 43 H 1.09000 * 110.41130 * 205.97385 * 21 19 17 44 44 H 1.09002 * 110.40724 * 328.40236 * 21 19 17 45 45 H 0.96999 * 120.00315 * 180.02562 * 26 25 23 46 46 H 1.08996 * 110.40917 * 158.36744 * 31 22 21 47 47 H 1.09002 * 110.40685 * 280.79867 * 31 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.6459 -1.1672 -0.0067 6 1 4.0092 -2.1948 -0.0110 7 6 4.1506 -0.4424 -1.2560 8 6 3.7468 -1.2172 -2.4838 9 6 2.5693 -1.1371 -3.1324 10 7 2.6090 -1.9851 -4.1708 11 6 3.7662 -2.5882 -4.1900 12 7 4.5082 -2.1342 -3.1570 13 1 5.4114 -2.4078 -2.9331 14 6 4.1533 -0.4601 1.2237 15 8 3.4274 0.2996 1.8293 16 7 5.4138 -0.6722 1.6511 17 6 5.9070 0.0147 2.8474 18 1 5.2585 0.7979 3.2400 19 6 7.4178 0.2239 2.9679 20 1 8.0691 -0.0752 2.1466 21 6 7.9258 1.3302 3.9174 22 7 8.0274 0.6703 5.2399 23 6 9.0043 0.8310 6.1860 24 1 9.0997 0.1166 6.9904 25 6 9.8718 1.9120 6.1113 26 7 9.6488 2.8760 5.2433 27 14 11.3557 1.9987 7.2426 28 1 11.3804 0.8004 8.1194 29 1 12.5969 2.0426 6.4285 30 1 11.2692 3.2223 8.0797 31 6 6.8326 -0.2030 5.3065 32 6 6.7027 -0.8134 3.8583 33 1 6.8212 -1.8854 3.7002 34 1 -0.3633 -0.5138 0.8900 35 1 -0.3634 1.0276 0.0005 36 1 -0.3634 -0.5138 -0.8900 37 1 1.6959 -2.0073 -0.0005 38 1 3.7158 0.5562 -1.2973 39 1 5.2371 -0.3643 -1.2166 40 1 1.7386 -0.5015 -2.8635 41 1 4.0801 -3.3249 -4.9147 42 1 5.9944 -1.2797 1.1665 43 1 8.9036 1.6883 3.5952 44 1 7.2128 2.1538 3.9574 45 1 10.2552 3.6312 5.1908 46 1 6.9856 -1.0018 6.0322 47 1 5.9489 0.3810 5.5634 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001114770529.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:07:24 Heat of formation + Delta-G solvation = 29.353344 kcal Electronic energy + Delta-G solvation = -30377.347673 eV Core-core repulsion = 26176.233406 eV Total energy + Delta-G solvation = -4201.114267 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 2.06 seconds Orbital eigenvalues (eV) -42.99002 -41.54128 -40.43631 -39.25635 -36.25763 -36.06508 -34.34509 -33.68527 -32.87042 -32.07473 -30.67235 -28.87796 -28.71920 -27.55880 -25.58910 -23.53343 -22.43785 -22.24781 -21.97938 -21.76440 -20.93596 -20.73353 -18.88224 -18.80125 -18.51210 -18.09072 -17.38800 -16.84295 -16.58845 -16.18102 -15.79604 -15.74496 -15.51788 -15.30211 -15.07781 -14.86395 -14.64953 -14.49019 -14.29776 -13.88947 -13.75021 -13.54102 -13.42456 -13.34002 -13.17862 -12.96830 -12.87327 -12.75701 -12.69166 -12.08181 -11.98675 -11.88482 -11.68087 -11.26880 -10.94760 -10.90958 -10.88381 -10.72976 -10.60603 -10.02348 -9.67681 -9.28343 -8.95056 -7.93685 -5.31165 1.06551 1.45961 1.46650 1.53495 1.58133 1.70307 2.04879 2.25244 2.29102 2.42556 2.48505 2.87154 3.26721 3.50454 3.63133 3.77913 3.82699 3.88874 3.95587 3.96619 4.06906 4.11793 4.20580 4.23664 4.30477 4.51165 4.55938 4.63237 4.72408 4.73449 4.81702 4.88976 4.93559 4.96102 5.11763 5.26598 5.28317 5.40031 5.43888 5.49282 5.55240 5.62712 5.78510 6.14258 6.54980 6.62939 6.66209 6.97871 7.17594 7.26831 7.49462 7.65007 8.43478 9.20419 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.018429 B = 0.002162 C = 0.002031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.996761 B =12947.266271 C =13784.449254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.507 3.493 3 O -0.568 6.568 4 N -0.707 5.707 5 C 0.154 3.846 6 H 0.151 0.849 7 C -0.051 4.051 8 C -0.011 4.011 9 C -0.033 4.033 10 N -0.537 5.537 11 C 0.195 3.805 12 N -0.552 5.552 13 H 0.437 0.563 14 C 0.497 3.503 15 O -0.554 6.554 16 N -0.681 5.681 17 C 0.115 3.885 18 H 0.094 0.906 19 C -0.179 4.179 20 H 0.129 0.871 21 C 0.188 3.812 22 N -0.617 5.617 23 C -0.239 4.239 24 H 0.085 0.915 25 C -0.065 4.065 26 N -0.950 5.950 27 Si 0.983 3.017 28 H -0.262 1.262 29 H -0.288 1.288 30 H -0.294 1.294 31 C 0.147 3.853 32 C -0.160 4.160 33 H 0.146 0.854 34 H 0.101 0.899 35 H 0.079 0.921 36 H 0.113 0.887 37 H 0.421 0.579 38 H 0.082 0.918 39 H 0.101 0.899 40 H 0.152 0.848 41 H 0.244 0.756 42 H 0.418 0.582 43 H 0.059 0.941 44 H -0.011 1.011 45 H 0.250 0.750 46 H 0.064 0.936 47 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.338 -19.007 -19.545 30.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.296 3.704 3 O -0.445 6.445 4 N -0.361 5.361 5 C 0.044 3.956 6 H 0.168 0.832 7 C -0.091 4.091 8 C -0.128 4.128 9 C -0.180 4.180 10 N -0.257 5.257 11 C -0.090 4.090 12 N -0.157 5.157 13 H 0.278 0.722 14 C 0.283 3.717 15 O -0.430 6.430 16 N -0.333 5.333 17 C 0.007 3.993 18 H 0.111 0.889 19 C -0.200 4.200 20 H 0.147 0.853 21 C 0.062 3.938 22 N -0.341 5.341 23 C -0.368 4.368 24 H 0.102 0.898 25 C -0.258 4.258 26 N -0.597 5.597 27 Si 0.811 3.189 28 H -0.186 1.186 29 H -0.215 1.215 30 H -0.221 1.221 31 C 0.021 3.979 32 C -0.181 4.181 33 H 0.164 0.836 34 H 0.120 0.880 35 H 0.098 0.902 36 H 0.132 0.868 37 H 0.259 0.741 38 H 0.100 0.900 39 H 0.120 0.880 40 H 0.169 0.831 41 H 0.260 0.740 42 H 0.256 0.744 43 H 0.078 0.922 44 H 0.007 0.993 45 H 0.059 0.941 46 H 0.082 0.918 47 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -13.956 -17.682 -19.585 29.850 hybrid contribution 1.843 0.395 1.239 2.255 sum -12.113 -17.288 -18.347 27.968 Atomic orbital electron populations 1.21904 0.89292 1.05472 1.05991 1.21320 0.91813 0.83211 0.74065 1.90722 1.71510 1.33162 1.49133 1.45531 1.04871 1.09534 1.76177 1.20792 0.82833 1.01871 0.90130 0.83165 1.20220 1.02591 0.98559 0.87700 1.20750 0.93961 0.98999 0.99044 1.22000 0.98148 1.02625 0.95257 1.70283 1.21901 1.11510 1.22004 1.25691 0.87662 1.01997 0.93626 1.43231 1.16935 1.32158 1.23417 0.72190 1.21567 0.81488 0.82043 0.86605 1.90774 1.57121 1.36818 1.58288 1.45126 1.13722 1.46975 1.27455 1.21314 0.91907 0.97760 0.88279 0.88853 1.24292 0.93640 1.00717 1.01337 0.85287 1.20796 0.98166 0.90863 0.84009 1.45440 1.23562 1.49401 1.15649 1.19444 1.06400 1.05959 1.04987 0.89779 1.25803 1.03409 0.95300 1.01330 1.70116 1.38825 1.10604 1.40196 0.84952 0.78547 0.77582 0.77847 1.18611 1.21514 1.22139 1.21839 0.88670 0.93069 0.94334 1.24996 1.03622 0.97759 0.91729 0.83626 0.88016 0.90196 0.86827 0.74133 0.89995 0.88026 0.83080 0.74024 0.74414 0.92247 0.99313 0.94102 0.91803 0.96623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.28 10.32 71.23 0.74 -1.55 16 2 C 0.51 11.07 6.70 87.66 0.59 11.66 16 3 O -0.57 -18.83 12.95 19.38 0.25 -18.58 16 4 N -0.71 -10.44 4.67 -446.09 -2.09 -12.52 16 5 C 0.15 2.25 3.00 44.24 0.13 2.38 16 6 H 0.15 0.85 8.14 -2.39 -0.02 0.83 16 7 C -0.05 -0.78 5.10 29.85 0.15 -0.63 16 8 C -0.01 -0.15 6.29 40.95 0.26 0.11 16 9 C -0.03 -0.59 11.51 83.52 0.96 0.37 16 10 N -0.54 -9.78 11.25 -200.31 -2.25 -12.03 16 11 C 0.19 1.89 13.04 180.26 2.35 4.24 16 12 N -0.55 -3.98 6.15 -186.50 -1.15 -5.12 16 13 H 0.44 0.06 8.96 -92.71 -0.83 -0.78 16 14 C 0.50 12.44 6.82 87.66 0.60 13.03 16 15 O -0.55 -20.53 13.27 19.40 0.26 -20.27 16 16 N -0.68 -15.06 5.56 -442.53 -2.46 -17.52 16 17 C 0.11 3.71 5.92 44.99 0.27 3.98 16 18 H 0.09 3.83 7.40 -2.39 -0.02 3.81 16 19 C -0.18 -6.42 6.98 -9.88 -0.07 -6.49 16 20 H 0.13 3.91 8.14 -2.39 -0.02 3.89 16 21 C 0.19 9.41 5.70 86.53 0.49 9.90 16 22 N -0.62 -32.21 3.38 -681.41 -2.30 -34.51 16 23 C -0.24 -13.45 10.35 84.03 0.87 -12.58 16 24 H 0.08 4.48 7.85 -2.91 -0.02 4.46 16 25 C -0.06 -3.71 5.40 84.86 0.46 -3.25 16 26 N -0.95 -57.89 10.86 21.65 0.24 -57.66 16 27 Si 0.98 45.46 29.56 68.60 2.03 47.49 16 28 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 29 H -0.29 -13.18 7.11 99.48 0.71 -12.48 16 30 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 31 C 0.15 6.17 7.10 87.73 0.62 6.79 16 32 C -0.16 -5.17 7.34 -8.69 -0.06 -5.24 16 33 H 0.15 3.64 8.14 -2.39 -0.02 3.62 16 34 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.08 1.30 8.12 -2.39 -0.02 1.28 16 36 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.42 3.29 8.83 -92.71 -0.82 2.47 16 38 H 0.08 1.99 6.03 -2.39 -0.01 1.98 16 39 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.15 2.91 8.06 -2.91 -0.02 2.88 16 41 H 0.24 0.25 8.06 -2.91 -0.02 0.22 16 42 H 0.42 5.46 8.83 -92.71 -0.82 4.64 16 43 H 0.06 3.32 6.51 -2.39 -0.02 3.31 16 44 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 45 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 46 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 47 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 Total: -1.00 -91.37 390.78 -0.56 -91.93 By element: Atomic # 1 Polarization: 17.50 SS G_CDS: -1.43 Total: 16.07 kcal Atomic # 6 Polarization: 14.38 SS G_CDS: 8.35 Total: 22.73 kcal Atomic # 7 Polarization: -129.35 SS G_CDS: -10.02 Total: -139.36 kcal Atomic # 8 Polarization: -39.36 SS G_CDS: 0.51 Total: -38.85 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Total: -91.37 -0.56 -91.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114770529.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.285 kcal (2) G-P(sol) polarization free energy of solvation -91.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.931 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.06 seconds