Wall clock time and date at job start Wed Apr 1 2020 04:31:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46491 * 109.47449 * 2 1 4 4 C 1.46509 * 119.99849 * 269.99836 * 3 2 1 5 5 C 1.50699 * 109.47012 * 269.99960 * 4 3 2 6 6 H 1.07991 * 120.00225 * 0.02562 * 5 4 3 7 7 C 1.37879 * 119.99625 * 179.97438 * 5 4 3 8 8 N 1.31520 * 119.99951 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 120.00045 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.46856 * 60.00480 * 9 7 5 11 11 H 1.48500 * 109.46997 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47007 * 300.00614 * 9 7 5 13 13 C 1.34779 * 120.00204 * 89.99882 * 3 2 1 14 14 O 1.21278 * 119.99708 * 180.02562 * 13 3 2 15 15 C 1.50690 * 119.99909 * 0.02562 * 13 3 2 16 16 N 1.46901 * 109.47111 * 180.02562 * 15 13 3 17 17 C 1.46904 * 111.00029 * 179.97438 * 16 15 13 18 18 C 1.53004 * 109.47113 * 179.97438 * 17 16 15 19 19 N 1.46498 * 109.46999 * 179.97438 * 18 17 16 20 20 C 1.34777 * 119.99843 * 179.97438 * 19 18 17 21 21 O 1.21645 * 119.99950 * 0.02562 * 20 19 18 22 22 C 1.47054 * 119.99882 * 179.97438 * 20 19 18 23 23 C 1.38005 * 125.91914 * 179.97438 * 22 20 19 24 24 C 1.39352 * 107.48770 * 180.02562 * 23 22 20 25 25 C 1.38076 * 107.51477 * 359.97438 * 24 23 22 26 26 C 1.43205 * 125.89667 * 180.02562 * 25 24 23 27 27 N 9.76079 * 113.99564 * 244.63756 * 16 1 2 28 28 N 1.36723 * 108.21261 * 0.26903 * 25 24 23 29 29 H 0.96993 * 125.69190 * 179.73669 * 28 25 24 30 30 H 1.09004 * 109.46623 * 300.00406 * 1 2 3 31 31 H 1.08993 * 109.46633 * 59.99932 * 1 2 3 32 32 H 1.08993 * 109.46889 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47298 * 239.99361 * 2 1 3 34 34 H 1.08998 * 109.47069 * 120.00226 * 2 1 3 35 35 H 1.08998 * 109.46816 * 30.00491 * 4 3 2 36 36 H 1.09000 * 109.46693 * 149.99627 * 4 3 2 37 37 H 0.96996 * 119.99369 * 180.02562 * 8 7 5 38 38 H 1.08997 * 109.47881 * 59.99709 * 15 13 3 39 39 H 1.09003 * 109.47208 * 299.99971 * 15 13 3 40 40 H 1.00902 * 110.99693 * 303.95200 * 16 15 13 41 41 H 1.08998 * 109.47283 * 59.99579 * 17 16 15 42 42 H 1.09005 * 109.46982 * 299.99437 * 17 16 15 43 43 H 1.09004 * 109.46543 * 59.99886 * 18 17 16 44 44 H 1.08997 * 109.47079 * 299.99989 * 18 17 16 45 45 H 0.96996 * 119.99831 * 0.02562 * 19 18 17 46 46 H 1.08002 * 126.25428 * 0.02562 * 23 22 20 47 47 H 1.08003 * 126.24633 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2627 2.0717 -1.2688 5 6 3.6859 1.8348 -1.7038 6 1 4.3427 1.2300 -1.0962 7 6 4.1492 2.3894 -2.8780 8 7 3.3492 3.1255 -3.6182 9 14 5.9137 2.0964 -3.4170 10 1 6.1418 0.6397 -3.5937 11 1 6.1611 2.7963 -4.7031 12 1 6.8408 2.6206 -2.3822 13 6 2.2431 2.0165 1.1672 14 8 2.6470 3.1600 1.1671 15 6 1.9924 1.3060 2.4722 16 7 2.3100 2.2063 3.5888 17 6 2.0764 1.5461 4.8802 18 6 2.4180 2.5125 6.0161 19 7 2.1845 1.8543 7.3040 20 6 2.4197 2.5187 8.4527 21 8 2.8254 3.6650 8.4202 22 6 2.1848 1.8582 9.7454 23 6 2.3842 2.4204 10.9899 24 6 2.0440 1.4614 11.9420 25 6 1.6411 0.3278 11.2645 26 6 1.2055 -0.8979 11.8632 27 7 0.8692 -1.8735 12.3382 28 7 1.7352 0.5756 9.9232 29 1 1.5177 -0.0509 9.2154 30 1 -0.3633 0.5139 0.8900 31 1 -0.3632 0.5138 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8899 35 1 1.5818 1.6876 -2.0284 36 1 2.0957 3.1409 -1.1385 37 1 3.6751 3.5153 -4.4444 38 1 2.6228 0.4187 2.5299 39 1 0.9445 1.0115 2.5302 40 1 3.2581 2.5450 3.5217 41 1 2.7074 0.6605 4.9549 42 1 1.0290 1.2533 4.9544 43 1 1.7871 3.3983 5.9415 44 1 3.4653 2.8049 5.9418 45 1 1.8613 0.9401 7.3298 46 1 2.7392 3.4207 11.1894 47 1 2.0874 1.5827 13.0143 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001125776094.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:33 Heat of formation + Delta-G solvation = 11.140324 kcal Electronic energy + Delta-G solvation = -28291.569596 eV Core-core repulsion = 24089.665553 eV Total energy + Delta-G solvation = -4201.904043 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -42.08365 -39.71904 -39.17875 -37.09642 -36.71359 -35.34397 -34.62002 -32.82261 -32.01006 -30.93084 -30.15504 -29.54048 -27.46790 -25.61797 -24.22228 -23.06667 -22.65348 -22.18839 -21.76221 -21.02773 -20.23495 -18.52596 -17.99819 -16.61273 -16.58446 -16.48925 -16.28744 -15.89780 -15.56857 -15.30039 -15.16222 -14.80598 -14.43797 -14.29065 -14.14473 -13.88055 -13.74732 -13.57928 -13.49765 -13.35796 -13.27809 -13.23325 -12.84914 -12.48563 -12.30365 -12.02550 -11.86671 -11.74220 -11.50572 -11.20309 -10.95506 -10.78173 -10.70515 -10.55221 -10.15692 -9.84528 -9.68016 -9.66007 -9.00655 -8.97376 -8.51391 -8.45366 -7.69433 -6.06374 -4.11517 0.32422 1.55455 1.56373 2.37101 2.46793 2.78482 2.79156 3.29223 3.29395 3.34207 3.34818 3.40602 3.68614 4.11483 4.28090 4.43139 4.46311 4.51223 4.62934 4.75432 5.01398 5.07692 5.18600 5.21025 5.28004 5.35880 5.41755 5.42492 5.53476 5.59213 5.62494 5.74190 5.75207 5.85207 5.96203 6.05365 6.17991 6.34901 6.42540 6.65904 6.74720 6.88107 7.06859 7.21290 7.43399 7.52031 7.59056 7.89786 8.21115 8.39354 8.87501 9.07178 9.53642 11.01572 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.017510 B = 0.001534 C = 0.001477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.683114 B =18243.243334 C =18956.031889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.598 5.598 4 C 0.248 3.752 5 C -0.529 4.529 6 H 0.056 0.944 7 C 0.062 3.938 8 N -0.894 5.894 9 Si 0.898 3.102 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.503 3.497 14 O -0.527 6.527 15 C 0.043 3.957 16 N -0.668 5.668 17 C 0.050 3.950 18 C 0.119 3.881 19 N -0.727 5.727 20 C 0.586 3.414 21 O -0.511 6.511 22 C -0.002 4.002 23 C -0.111 4.111 24 C -0.122 4.122 25 C 0.090 3.910 26 C 0.273 3.727 27 N -0.393 5.393 28 N -0.516 5.516 29 H 0.423 0.577 30 H 0.050 0.950 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.082 0.918 34 H 0.062 0.938 35 H 0.031 0.969 36 H 0.044 0.956 37 H 0.264 0.736 38 H 0.054 0.946 39 H 0.095 0.905 40 H 0.356 0.644 41 H 0.035 0.965 42 H 0.078 0.922 43 H 0.087 0.913 44 H 0.075 0.925 45 H 0.394 0.606 46 H 0.163 0.837 47 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.892 -9.023 27.075 29.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.018 4.018 3 N -0.331 5.331 4 C 0.129 3.871 5 C -0.567 4.567 6 H 0.074 0.926 7 C -0.140 4.140 8 N -0.532 5.532 9 Si 0.726 3.274 10 H -0.203 1.203 11 H -0.211 1.211 12 H -0.202 1.202 13 C 0.289 3.711 14 O -0.403 6.403 15 C -0.089 4.089 16 N -0.302 5.302 17 C -0.080 4.080 18 C -0.004 4.004 19 N -0.379 5.379 20 C 0.372 3.628 21 O -0.385 6.385 22 C -0.120 4.120 23 C -0.137 4.137 24 C -0.151 4.151 25 C -0.027 4.027 26 C -0.043 4.043 27 N -0.070 5.070 28 N -0.113 5.113 29 H 0.261 0.739 30 H 0.069 0.931 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.101 0.899 34 H 0.080 0.920 35 H 0.049 0.951 36 H 0.062 0.938 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.113 0.887 40 H 0.176 0.824 41 H 0.053 0.947 42 H 0.097 0.903 43 H 0.105 0.895 44 H 0.094 0.906 45 H 0.227 0.773 46 H 0.181 0.819 47 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -6.537 -8.722 27.364 29.455 hybrid contribution 1.483 -1.420 -0.980 2.276 sum -5.054 -10.142 26.383 28.714 Atomic orbital electron populations 1.22227 0.96784 1.01339 1.02434 1.21404 0.93521 0.84317 1.02538 1.48255 1.63968 1.13175 1.07718 1.19257 0.96167 0.93696 0.78029 1.21386 0.96966 1.32070 1.06318 0.92624 1.24934 0.97817 0.94902 0.96394 1.69922 1.35719 1.33275 1.14311 0.86566 0.84822 0.78177 0.77875 1.20325 1.21140 1.20197 1.20114 0.79074 0.87110 0.84834 1.90691 1.45051 1.17646 1.86875 1.21903 1.02381 0.94209 0.90456 1.59958 1.33252 1.37487 0.99509 1.22077 1.01683 0.95024 0.89264 1.21366 1.02800 0.96334 0.79902 1.45797 1.68630 1.17235 1.06258 1.17020 0.78231 0.85790 0.81805 1.90913 1.44849 1.16336 1.86367 1.20686 1.10420 0.84977 0.95921 1.21336 1.02641 1.00695 0.89024 1.21322 1.02895 0.90661 1.00211 1.15580 1.12949 0.91230 0.82973 1.24317 0.93610 0.91464 0.94929 1.81367 1.09461 1.09573 1.06557 1.41867 1.50564 1.12536 1.06382 0.73870 0.93064 0.91937 0.92246 0.89942 0.92012 0.95053 0.93839 0.92639 0.92795 0.88660 0.82364 0.94713 0.90337 0.89502 0.90642 0.77291 0.81900 0.82242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.10 10.24 37.16 0.38 -1.72 16 2 C 0.11 1.58 5.93 -4.04 -0.02 1.56 16 3 N -0.60 -12.02 2.46 -175.06 -0.43 -12.45 16 4 C 0.25 6.33 5.16 -5.19 -0.03 6.30 16 5 C -0.53 -14.72 9.39 -34.44 -0.32 -15.04 16 6 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -26.29 13.29 55.43 0.74 -25.56 16 9 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 C 0.50 9.88 7.71 -10.99 -0.08 9.80 16 14 O -0.53 -12.86 15.78 5.56 0.09 -12.78 16 15 C 0.04 0.57 4.72 -4.98 -0.02 0.54 16 16 N -0.67 -8.26 6.13 -115.06 -0.70 -8.97 16 17 C 0.05 0.39 5.80 -3.82 -0.02 0.36 16 18 C 0.12 0.97 5.93 -4.04 -0.02 0.94 16 19 N -0.73 -4.28 5.55 -61.50 -0.34 -4.63 16 20 C 0.59 4.74 7.80 -12.69 -0.10 4.64 16 21 O -0.51 -6.28 16.87 5.24 0.09 -6.19 16 22 C 0.00 -0.01 7.04 -82.04 -0.58 -0.59 16 23 C -0.11 -0.60 10.60 -39.25 -0.42 -1.02 16 24 C -0.12 -0.51 10.80 -39.23 -0.42 -0.93 16 25 C 0.09 0.40 6.93 -83.82 -0.58 -0.18 16 26 C 0.27 1.64 15.89 -22.47 -0.36 1.28 16 27 N -0.39 -3.35 18.54 41.84 0.78 -2.57 16 28 N -0.52 -1.78 6.02 -6.96 -0.04 -1.82 16 29 H 0.42 0.30 8.15 -40.82 -0.33 -0.04 16 30 H 0.05 0.60 7.22 -51.93 -0.38 0.22 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.08 1.30 8.07 -51.93 -0.42 0.88 16 34 H 0.06 0.73 6.44 -51.93 -0.33 0.40 16 35 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 36 H 0.04 1.27 7.42 -51.93 -0.39 0.88 16 37 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 38 H 0.05 0.61 7.40 -51.93 -0.38 0.23 16 39 H 0.10 1.07 7.19 -51.93 -0.37 0.70 16 40 H 0.36 4.77 8.43 -39.29 -0.33 4.44 16 41 H 0.03 0.22 8.14 -51.93 -0.42 -0.20 16 42 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.39 1.01 7.57 -40.82 -0.31 0.70 16 46 H 0.16 0.81 8.06 -52.49 -0.42 0.38 16 47 H 0.16 0.33 8.06 -52.48 -0.42 -0.10 16 LS Contribution 411.95 15.07 6.21 6.21 Total: -1.00 -36.90 411.95 -7.93 -44.84 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: -6.59 Total: -0.25 kcal Atomic # 6 Polarization: 10.30 SS G_CDS: -2.70 Total: 7.60 kcal Atomic # 7 Polarization: -55.99 SS G_CDS: -0.01 Total: -55.99 kcal Atomic # 8 Polarization: -19.14 SS G_CDS: 0.18 Total: -18.96 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -36.90 -7.93 -44.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001125776094.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.975 kcal (2) G-P(sol) polarization free energy of solvation -36.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.835 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds