Wall clock time and date at job start Wed Apr 1 2020 04:31:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46491 * 109.47449 * 2 1 4 4 C 1.46509 * 119.99849 * 269.99836 * 3 2 1 5 5 C 1.50699 * 109.47012 * 269.99960 * 4 3 2 6 6 H 1.07991 * 120.00225 * 0.02562 * 5 4 3 7 7 C 1.37879 * 119.99625 * 179.97438 * 5 4 3 8 8 N 1.31520 * 119.99951 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 120.00045 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.46856 * 60.00480 * 9 7 5 11 11 H 1.48500 * 109.46997 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47007 * 300.00614 * 9 7 5 13 13 C 1.34779 * 120.00204 * 89.99882 * 3 2 1 14 14 O 1.21278 * 119.99708 * 180.02562 * 13 3 2 15 15 C 1.50690 * 119.99909 * 0.02562 * 13 3 2 16 16 N 1.46901 * 109.47111 * 180.02562 * 15 13 3 17 17 C 1.46904 * 111.00029 * 179.97438 * 16 15 13 18 18 C 1.53004 * 109.47113 * 179.97438 * 17 16 15 19 19 N 1.46498 * 109.46999 * 179.97438 * 18 17 16 20 20 C 1.34777 * 119.99843 * 179.97438 * 19 18 17 21 21 O 1.21645 * 119.99950 * 0.02562 * 20 19 18 22 22 C 1.47054 * 119.99882 * 179.97438 * 20 19 18 23 23 C 1.38005 * 125.91914 * 179.97438 * 22 20 19 24 24 C 1.39352 * 107.48770 * 180.02562 * 23 22 20 25 25 C 1.38076 * 107.51477 * 359.97438 * 24 23 22 26 26 C 1.43205 * 125.89667 * 180.02562 * 25 24 23 27 27 N 9.76079 * 113.99564 * 244.63756 * 16 1 2 28 28 N 1.36723 * 108.21261 * 0.26903 * 25 24 23 29 29 H 0.96993 * 125.69190 * 179.73669 * 28 25 24 30 30 H 1.09004 * 109.46623 * 300.00406 * 1 2 3 31 31 H 1.08993 * 109.46633 * 59.99932 * 1 2 3 32 32 H 1.08993 * 109.46889 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47298 * 239.99361 * 2 1 3 34 34 H 1.08998 * 109.47069 * 120.00226 * 2 1 3 35 35 H 1.08998 * 109.46816 * 30.00491 * 4 3 2 36 36 H 1.09000 * 109.46693 * 149.99627 * 4 3 2 37 37 H 0.96996 * 119.99369 * 180.02562 * 8 7 5 38 38 H 1.08997 * 109.47881 * 59.99709 * 15 13 3 39 39 H 1.09003 * 109.47208 * 299.99971 * 15 13 3 40 40 H 1.00902 * 110.99693 * 303.95200 * 16 15 13 41 41 H 1.08998 * 109.47283 * 59.99579 * 17 16 15 42 42 H 1.09005 * 109.46982 * 299.99437 * 17 16 15 43 43 H 1.09004 * 109.46543 * 59.99886 * 18 17 16 44 44 H 1.08997 * 109.47079 * 299.99989 * 18 17 16 45 45 H 0.96996 * 119.99831 * 0.02562 * 19 18 17 46 46 H 1.08002 * 126.25428 * 0.02562 * 23 22 20 47 47 H 1.08003 * 126.24633 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2627 2.0717 -1.2688 5 6 3.6859 1.8348 -1.7038 6 1 4.3427 1.2300 -1.0962 7 6 4.1492 2.3894 -2.8780 8 7 3.3492 3.1255 -3.6182 9 14 5.9137 2.0964 -3.4170 10 1 6.1418 0.6397 -3.5937 11 1 6.1611 2.7963 -4.7031 12 1 6.8408 2.6206 -2.3822 13 6 2.2431 2.0165 1.1672 14 8 2.6470 3.1600 1.1671 15 6 1.9924 1.3060 2.4722 16 7 2.3100 2.2063 3.5888 17 6 2.0764 1.5461 4.8802 18 6 2.4180 2.5125 6.0161 19 7 2.1845 1.8543 7.3040 20 6 2.4197 2.5187 8.4527 21 8 2.8254 3.6650 8.4202 22 6 2.1848 1.8582 9.7454 23 6 2.3842 2.4204 10.9899 24 6 2.0440 1.4614 11.9420 25 6 1.6411 0.3278 11.2645 26 6 1.2055 -0.8979 11.8632 27 7 0.8692 -1.8735 12.3382 28 7 1.7352 0.5756 9.9232 29 1 1.5177 -0.0509 9.2154 30 1 -0.3633 0.5139 0.8900 31 1 -0.3632 0.5138 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8899 35 1 1.5818 1.6876 -2.0284 36 1 2.0957 3.1409 -1.1385 37 1 3.6751 3.5153 -4.4444 38 1 2.6228 0.4187 2.5299 39 1 0.9445 1.0115 2.5302 40 1 3.2581 2.5450 3.5217 41 1 2.7074 0.6605 4.9549 42 1 1.0290 1.2533 4.9544 43 1 1.7871 3.3983 5.9415 44 1 3.4653 2.8049 5.9418 45 1 1.8613 0.9401 7.3298 46 1 2.7392 3.4207 11.1894 47 1 2.0874 1.5827 13.0143 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001125776094.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:26 Heat of formation + Delta-G solvation = -18.071716 kcal Electronic energy + Delta-G solvation = -28292.836325 eV Core-core repulsion = 24089.665553 eV Total energy + Delta-G solvation = -4203.170772 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.89 seconds Orbital eigenvalues (eV) -42.49643 -40.72763 -40.30227 -37.67359 -37.56286 -36.84904 -35.48748 -34.85328 -32.40967 -31.70747 -31.42647 -30.37204 -29.02474 -26.85258 -25.03299 -24.50832 -23.75925 -23.15552 -22.24309 -21.43820 -20.74034 -19.92993 -18.65897 -18.55480 -17.81709 -17.47781 -17.22241 -16.93903 -16.60787 -16.30450 -15.88640 -15.74853 -15.39544 -15.30820 -14.92125 -14.62931 -14.61723 -14.55810 -14.49905 -14.27219 -14.15457 -13.90923 -13.73320 -13.50884 -13.43358 -13.29529 -13.21067 -13.06337 -12.65368 -12.62956 -12.48099 -12.41064 -12.12820 -11.84663 -11.72264 -11.42164 -10.63696 -10.55860 -10.31532 -10.17453 -9.43591 -9.40252 -9.38300 -8.21459 -6.36733 -0.12619 1.11035 1.12012 1.36445 1.40880 1.48039 1.80916 1.89406 1.99458 2.23958 2.30908 2.35963 2.45431 2.90841 3.07844 3.30729 3.71091 3.74076 3.88344 4.10593 4.11376 4.14641 4.25317 4.35813 4.40619 4.47603 4.53487 4.69342 4.83118 4.88854 4.93147 4.96517 5.02005 5.07685 5.12168 5.19531 5.24363 5.42128 5.42879 5.59049 5.68041 5.83224 5.93618 6.06492 6.07748 6.25039 6.29691 6.41841 6.71774 6.86204 7.03223 7.29876 7.55109 8.85159 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.017510 B = 0.001534 C = 0.001477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.683114 B =18243.243334 C =18956.031889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.100 3.900 3 N -0.605 5.605 4 C 0.263 3.737 5 C -0.544 4.544 6 H 0.055 0.945 7 C 0.006 3.994 8 N -0.929 5.929 9 Si 0.968 3.032 10 H -0.259 1.259 11 H -0.280 1.280 12 H -0.278 1.278 13 C 0.490 3.510 14 O -0.589 6.589 15 C 0.062 3.938 16 N -0.692 5.692 17 C 0.059 3.941 18 C 0.125 3.875 19 N -0.710 5.710 20 C 0.586 3.414 21 O -0.561 6.561 22 C -0.008 4.008 23 C -0.120 4.120 24 C -0.114 4.114 25 C 0.092 3.908 26 C 0.300 3.700 27 N -0.436 5.436 28 N -0.500 5.500 29 H 0.436 0.564 30 H 0.062 0.938 31 H 0.034 0.966 32 H 0.095 0.905 33 H 0.069 0.931 34 H 0.105 0.895 35 H 0.019 0.981 36 H -0.007 1.007 37 H 0.266 0.734 38 H 0.085 0.915 39 H 0.125 0.875 40 H 0.346 0.654 41 H 0.061 0.939 42 H 0.099 0.901 43 H 0.064 0.936 44 H 0.061 0.939 45 H 0.413 0.587 46 H 0.163 0.837 47 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.904 -12.101 28.858 31.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.022 4.022 3 N -0.337 5.337 4 C 0.141 3.859 5 C -0.582 4.582 6 H 0.073 0.927 7 C -0.193 4.193 8 N -0.568 5.568 9 Si 0.792 3.208 10 H -0.184 1.184 11 H -0.205 1.205 12 H -0.203 1.203 13 C 0.279 3.721 14 O -0.469 6.469 15 C -0.070 4.070 16 N -0.326 5.326 17 C -0.070 4.070 18 C 0.001 3.999 19 N -0.362 5.362 20 C 0.373 3.627 21 O -0.439 6.439 22 C -0.126 4.126 23 C -0.146 4.146 24 C -0.142 4.142 25 C -0.026 4.026 26 C -0.015 4.015 27 N -0.114 5.114 28 N -0.099 5.099 29 H 0.278 0.722 30 H 0.081 0.919 31 H 0.053 0.947 32 H 0.114 0.886 33 H 0.087 0.913 34 H 0.123 0.877 35 H 0.037 0.963 36 H 0.011 0.989 37 H 0.075 0.925 38 H 0.103 0.897 39 H 0.143 0.857 40 H 0.165 0.835 41 H 0.079 0.921 42 H 0.118 0.882 43 H 0.083 0.917 44 H 0.079 0.921 45 H 0.250 0.750 46 H 0.180 0.820 47 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -6.603 -11.920 29.154 32.181 hybrid contribution 1.441 -0.434 -1.505 2.128 sum -5.162 -12.354 27.649 30.721 Atomic orbital electron populations 1.22161 0.94683 1.03449 1.01673 1.21754 0.95223 0.81278 1.03993 1.48283 1.64108 1.15132 1.06154 1.18651 0.95159 0.91431 0.80617 1.21705 0.97956 1.32035 1.06528 0.92673 1.25879 1.02377 0.94497 0.96498 1.70055 1.37838 1.34177 1.14759 0.85471 0.79026 0.79008 0.77313 1.18375 1.20518 1.20330 1.21370 0.77385 0.86695 0.86662 1.90656 1.47687 1.20605 1.87933 1.21802 1.04647 0.93938 0.86606 1.59928 1.32822 1.38668 1.01144 1.22089 1.03450 0.95019 0.86481 1.21150 1.01478 0.96176 0.81134 1.45566 1.67721 1.17920 1.05000 1.17287 0.77340 0.85247 0.82778 1.90892 1.47290 1.18567 1.87104 1.20319 1.11576 0.85838 0.94898 1.21500 1.02691 1.01118 0.89326 1.21574 1.01687 0.89809 1.01165 1.15505 1.13041 0.90709 0.83319 1.24295 0.92389 0.90993 0.93816 1.81404 1.11065 1.10923 1.07980 1.41731 1.49699 1.11927 1.06535 0.72220 0.91882 0.94695 0.88596 0.91264 0.87734 0.96264 0.98873 0.92476 0.89710 0.85720 0.83513 0.92083 0.88225 0.91725 0.92099 0.74970 0.81964 0.80154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.58 10.24 71.98 0.74 -2.85 16 2 C 0.10 2.74 5.93 86.38 0.51 3.26 16 3 N -0.60 -24.43 2.46 -826.17 -2.03 -26.46 16 4 C 0.26 14.11 5.16 85.63 0.44 14.56 16 5 C -0.54 -31.09 9.39 25.60 0.24 -30.85 16 6 H 0.06 3.08 7.81 -2.92 -0.02 3.05 16 7 C 0.01 0.37 5.46 84.65 0.46 0.83 16 8 N -0.93 -56.37 13.29 21.45 0.28 -56.09 16 9 Si 0.97 44.61 29.54 68.60 2.03 46.63 16 10 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 11 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 12 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 13 C 0.49 19.24 7.71 87.65 0.68 19.91 16 14 O -0.59 -30.03 15.78 -3.02 -0.05 -30.08 16 15 C 0.06 1.44 4.72 85.55 0.40 1.85 16 16 N -0.69 -15.93 6.13 -517.92 -3.17 -19.10 16 17 C 0.06 0.72 5.80 86.30 0.50 1.22 16 18 C 0.12 1.89 5.93 86.38 0.51 2.40 16 19 N -0.71 -6.99 5.55 -466.73 -2.59 -9.58 16 20 C 0.59 8.96 7.80 86.56 0.68 9.64 16 21 O -0.56 -14.07 16.87 -4.17 -0.07 -14.14 16 22 C -0.01 -0.08 7.04 40.58 0.29 0.21 16 23 C -0.12 -1.13 10.60 22.48 0.24 -0.90 16 24 C -0.11 -0.68 10.80 22.50 0.24 -0.44 16 25 C 0.09 0.60 6.93 39.59 0.27 0.87 16 26 C 0.30 3.00 15.89 88.33 1.40 4.41 16 27 N -0.44 -6.83 18.54 19.00 0.35 -6.48 16 28 N -0.50 -2.14 6.02 -175.93 -1.06 -3.20 16 29 H 0.44 -0.79 8.15 -92.71 -0.76 -1.54 16 30 H 0.06 1.25 7.22 -2.38 -0.02 1.24 16 31 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.07 2.09 8.07 -2.39 -0.02 2.07 16 34 H 0.10 2.00 6.44 -2.39 -0.02 1.98 16 35 H 0.02 1.06 8.07 -2.39 -0.02 1.04 16 36 H -0.01 -0.43 7.42 -2.39 -0.02 -0.45 16 37 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 38 H 0.09 1.51 7.40 -2.39 -0.02 1.49 16 39 H 0.13 2.22 7.19 -2.39 -0.02 2.20 16 40 H 0.35 9.16 8.43 -89.69 -0.76 8.40 16 41 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 42 H 0.10 0.86 8.14 -2.38 -0.02 0.84 16 43 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 44 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 45 H 0.41 0.74 7.57 -92.71 -0.70 0.04 16 46 H 0.16 1.52 8.06 -2.91 -0.02 1.50 16 47 H 0.18 0.24 8.06 -2.91 -0.02 0.22 16 Total: -1.00 -87.11 411.95 0.13 -86.98 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -1.17 Total: 7.40 kcal Atomic # 6 Polarization: 16.52 SS G_CDS: 7.61 Total: 24.12 kcal Atomic # 7 Polarization: -112.70 SS G_CDS: -8.21 Total: -120.91 kcal Atomic # 8 Polarization: -44.11 SS G_CDS: -0.12 Total: -44.22 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.63 kcal Total: -87.11 0.13 -86.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001125776094.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.912 kcal (2) G-P(sol) polarization free energy of solvation -87.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.89 seconds