Wall clock time and date at job start Wed Apr 1 2020 04:31:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46499 * 109.47020 * 2 1 4 4 C 1.46503 * 120.00534 * 270.00413 * 3 2 1 5 5 C 1.50696 * 109.46841 * 269.99627 * 4 3 2 6 6 H 1.08007 * 120.00269 * 0.02562 * 5 4 3 7 7 C 1.37876 * 120.00057 * 179.97438 * 5 4 3 8 8 N 1.31514 * 119.99813 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 120.00439 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.46818 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46770 * 120.00183 * 9 7 5 12 12 H 1.48495 * 109.47306 * 240.00774 * 9 7 5 13 13 C 1.34786 * 119.99724 * 89.99884 * 3 2 1 14 14 O 1.21276 * 119.99943 * 180.02562 * 13 3 2 15 15 C 1.50693 * 119.99754 * 0.02562 * 13 3 2 16 16 N 1.46904 * 109.46946 * 179.97438 * 15 13 3 17 17 C 1.46903 * 110.99994 * 179.97438 * 16 15 13 18 18 C 1.53000 * 109.47134 * 180.02562 * 17 16 15 19 19 N 1.46495 * 109.47368 * 179.97438 * 18 17 16 20 20 C 1.34773 * 120.00244 * 179.97438 * 19 18 17 21 21 O 1.21612 * 119.99991 * 0.02562 * 20 19 18 22 22 C 1.47381 * 120.00166 * 180.02562 * 20 19 18 23 23 C 1.38123 * 126.46411 * 359.97402 * 22 20 19 24 24 N 1.34434 * 108.38629 * 180.02562 * 23 22 20 25 25 H 0.96996 * 125.38904 * 179.97438 * 24 23 22 26 26 C 1.37707 * 109.22038 * 359.75809 * 24 23 22 27 27 C 1.43195 * 125.84525 * 180.24841 * 26 24 23 28 28 N 9.61775 * 153.06776 * 218.88206 * 17 1 2 29 29 C 1.36359 * 108.31292 * 0.40040 * 26 24 23 30 30 H 1.08998 * 109.47150 * 299.99424 * 1 2 3 31 31 H 1.08996 * 109.47607 * 60.00159 * 1 2 3 32 32 H 1.09007 * 109.46405 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47150 * 240.00576 * 2 1 3 34 34 H 1.08998 * 109.47399 * 120.00345 * 2 1 3 35 35 H 1.09000 * 109.46817 * 29.99637 * 4 3 2 36 36 H 1.09000 * 109.47346 * 150.00077 * 4 3 2 37 37 H 0.96999 * 119.99974 * 179.97438 * 8 7 5 38 38 H 1.08997 * 109.47685 * 59.99658 * 15 13 3 39 39 H 1.08999 * 109.47260 * 299.99557 * 15 13 3 40 40 H 1.00899 * 111.00085 * 303.95437 * 16 15 13 41 41 H 1.08995 * 109.47121 * 60.00202 * 17 16 15 42 42 H 1.09002 * 109.46993 * 299.99652 * 17 16 15 43 43 H 1.09000 * 109.47338 * 59.99795 * 18 17 16 44 44 H 1.08999 * 109.47367 * 300.00247 * 18 17 16 45 45 H 0.97008 * 119.99935 * 0.02562 * 19 18 17 46 46 H 1.07999 * 125.80844 * 0.05565 * 23 22 20 47 47 H 1.08002 * 126.49687 * 179.88099 * 29 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0720 -1.2687 5 6 3.6857 1.8353 -1.7037 6 1 4.3426 1.2304 -1.0961 7 6 4.1490 2.3900 -2.8778 8 7 3.3490 3.1261 -3.6179 9 14 5.9135 2.0973 -3.4168 10 1 6.6011 1.2420 -2.4164 11 1 5.9214 1.4178 -4.7372 12 1 6.6203 3.3987 -3.5254 13 6 2.2429 2.0166 1.1673 14 8 2.6467 3.1601 1.1674 15 6 1.9922 1.3059 2.4723 16 7 2.3109 2.2057 3.5889 17 6 2.0773 1.5454 4.8803 18 6 2.4188 2.5117 6.0163 19 7 2.1854 1.8534 7.3041 20 6 2.4205 2.5177 8.4529 21 8 2.8261 3.6638 8.4205 22 6 2.1862 1.8553 9.7484 23 6 1.7295 0.5660 9.9404 24 7 1.6483 0.3374 11.2627 25 1 1.3543 -0.4911 11.6725 26 6 2.0531 1.4641 11.9432 27 6 2.1111 1.6083 13.3667 28 7 2.1594 1.7220 14.4960 29 6 2.3860 2.4200 11.0296 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3632 -1.0278 -0.0005 33 1 1.8933 -0.5137 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 1.5816 1.6879 -2.0283 36 1 2.0954 3.1412 -1.1383 37 1 3.6750 3.5167 -4.4437 38 1 2.6227 0.4186 2.5299 39 1 0.9444 1.0114 2.5302 40 1 3.2591 2.5438 3.5216 41 1 2.7078 0.6594 4.9545 42 1 1.0298 1.2533 4.9548 43 1 1.7880 3.3975 5.9418 44 1 3.4661 2.8043 5.9420 45 1 1.8622 0.9391 7.3299 46 1 1.4804 -0.1388 9.1609 47 1 2.7398 3.4177 11.2437 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001125987934.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:41 Heat of formation + Delta-G solvation = 10.164489 kcal Electronic energy + Delta-G solvation = -28166.634803 eV Core-core repulsion = 23964.688445 eV Total energy + Delta-G solvation = -4201.946358 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.174 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.12815 -39.53895 -39.11561 -37.03066 -36.54746 -35.27229 -34.37701 -32.79590 -32.16413 -30.78466 -30.11920 -29.40651 -27.38162 -25.44761 -23.55958 -23.18940 -23.02425 -22.19780 -22.10465 -20.69927 -19.98195 -18.43390 -17.00826 -16.77834 -16.54183 -16.33882 -16.20996 -16.04513 -15.74439 -15.45416 -15.10903 -14.78514 -14.47124 -14.24812 -14.09356 -13.72364 -13.61172 -13.54842 -13.42057 -13.29770 -13.20187 -13.14926 -12.87920 -12.43170 -12.20888 -12.00194 -11.76703 -11.61248 -11.45765 -11.18616 -10.90193 -10.75242 -10.55017 -10.30852 -10.13379 -9.82257 -9.61858 -9.34889 -9.02753 -8.95069 -8.43919 -8.42802 -7.65596 -6.04420 -4.09242 0.71671 1.26940 1.64548 2.50435 2.76156 2.78789 3.16715 3.29208 3.36544 3.39095 3.40393 3.44819 3.78683 4.18064 4.27708 4.37562 4.46240 4.55664 4.69808 4.87059 5.07396 5.08674 5.20593 5.23368 5.29330 5.30313 5.42310 5.47077 5.62867 5.69831 5.76025 5.78722 5.84256 5.94313 5.98909 6.11306 6.21017 6.43163 6.45792 6.75664 6.83385 7.10320 7.21531 7.30229 7.46636 7.55745 7.92268 7.99117 8.23694 8.43270 8.90707 9.11473 9.56092 11.03634 Molecular weight = 347.17amu Principal moments of inertia in cm(-1) A = 0.021540 B = 0.001444 C = 0.001397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.590897 B =19381.830229 C =20040.983106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.599 5.599 4 C 0.247 3.753 5 C -0.526 4.526 6 H 0.057 0.943 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.897 3.103 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.503 3.497 14 O -0.527 6.527 15 C 0.043 3.957 16 N -0.670 5.670 17 C 0.051 3.949 18 C 0.120 3.880 19 N -0.727 5.727 20 C 0.588 3.412 21 O -0.534 6.534 22 C -0.222 4.222 23 C 0.083 3.917 24 N -0.519 5.519 25 H 0.427 0.573 26 C 0.045 3.955 27 C 0.277 3.723 28 N -0.401 5.401 29 C -0.047 4.047 30 H 0.051 0.949 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.082 0.918 34 H 0.062 0.938 35 H 0.031 0.969 36 H 0.044 0.956 37 H 0.263 0.737 38 H 0.054 0.946 39 H 0.095 0.905 40 H 0.356 0.644 41 H 0.034 0.966 42 H 0.078 0.922 43 H 0.082 0.918 44 H 0.071 0.929 45 H 0.396 0.604 46 H 0.188 0.812 47 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.540 -13.655 26.243 30.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.018 4.018 3 N -0.332 5.332 4 C 0.128 3.872 5 C -0.565 4.565 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.725 3.275 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.289 3.711 14 O -0.403 6.403 15 C -0.089 4.089 16 N -0.303 5.303 17 C -0.079 4.079 18 C -0.003 4.003 19 N -0.379 5.379 20 C 0.375 3.625 21 O -0.411 6.411 22 C -0.232 4.232 23 C -0.059 4.059 24 N -0.113 5.113 25 H 0.266 0.734 26 C -0.067 4.067 27 C -0.038 4.038 28 N -0.078 5.078 29 C -0.075 4.075 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.100 0.900 34 H 0.080 0.920 35 H 0.049 0.951 36 H 0.062 0.938 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.113 0.887 40 H 0.176 0.824 41 H 0.053 0.947 42 H 0.096 0.904 43 H 0.101 0.899 44 H 0.089 0.911 45 H 0.230 0.770 46 H 0.205 0.795 47 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -7.608 -11.720 27.848 31.157 hybrid contribution 1.309 -1.874 -0.726 2.399 sum -6.299 -13.594 27.122 30.985 Atomic orbital electron populations 1.22228 0.96811 1.01311 1.02435 1.21400 0.93501 0.84332 1.02522 1.48254 1.64045 1.13168 1.07713 1.19259 0.96178 0.93712 0.78082 1.21467 0.96967 1.31845 1.06221 0.92511 1.24933 0.97795 0.94934 0.96421 1.69941 1.35576 1.33437 1.14332 0.86456 0.84702 0.78055 0.78257 1.19884 1.21013 1.20855 1.20146 0.79028 0.87113 0.84860 1.90689 1.45022 1.17666 1.86884 1.21894 1.02335 0.94216 0.90451 1.59954 1.33181 1.37562 0.99622 1.22073 1.01606 0.95076 0.89177 1.21276 1.02433 0.96219 0.80402 1.45689 1.69070 1.17363 1.05774 1.17279 0.77241 0.85492 0.82520 1.90838 1.45573 1.17348 1.87309 1.19636 1.14637 0.95010 0.93894 1.22510 1.00998 0.97558 0.84816 1.41575 1.49987 1.13518 1.06187 0.73399 1.15162 1.16862 0.90162 0.84471 1.24269 0.93739 0.95105 0.90723 1.81359 1.09540 1.05792 1.11093 1.21140 0.98137 0.98793 0.89411 0.93022 0.91986 0.92269 0.89994 0.91972 0.95075 0.93840 0.92772 0.92847 0.88685 0.82423 0.94746 0.90388 0.89947 0.91088 0.76996 0.79511 0.82026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.08 10.24 37.16 0.38 -1.70 16 2 C 0.11 1.58 5.93 -4.04 -0.02 1.56 16 3 N -0.60 -12.07 2.46 -175.06 -0.43 -12.50 16 4 C 0.25 6.32 5.16 -5.19 -0.03 6.30 16 5 C -0.53 -14.67 9.39 -34.44 -0.32 -15.00 16 6 H 0.06 1.58 7.81 -52.48 -0.41 1.17 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 8 N -0.89 -26.37 13.29 55.43 0.74 -25.63 16 9 Si 0.90 21.63 29.54 -169.99 -5.02 16.61 16 10 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 13 C 0.50 9.94 7.71 -10.98 -0.08 9.86 16 14 O -0.53 -12.96 15.78 5.56 0.09 -12.87 16 15 C 0.04 0.58 4.72 -4.98 -0.02 0.56 16 16 N -0.67 -8.49 6.12 -115.06 -0.70 -9.19 16 17 C 0.05 0.41 5.80 -3.82 -0.02 0.39 16 18 C 0.12 1.06 5.93 -4.04 -0.02 1.04 16 19 N -0.73 -4.65 5.54 -61.40 -0.34 -4.99 16 20 C 0.59 5.26 7.81 -12.54 -0.10 5.16 16 21 O -0.53 -7.36 16.92 5.27 0.09 -7.27 16 22 C -0.22 -1.30 6.13 -105.01 -0.64 -1.95 16 23 C 0.08 0.14 11.43 -16.45 -0.19 -0.04 16 24 N -0.52 -0.82 6.02 -10.29 -0.06 -0.88 16 25 H 0.43 -0.61 8.96 -40.82 -0.37 -0.98 16 26 C 0.04 0.21 6.90 -83.98 -0.58 -0.37 16 27 C 0.28 1.85 15.88 -22.47 -0.36 1.49 16 28 N -0.40 -3.68 18.54 41.84 0.78 -2.91 16 29 C -0.05 -0.29 10.59 -39.05 -0.41 -0.70 16 30 H 0.05 0.60 7.22 -51.93 -0.38 0.22 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.06 0.57 8.14 -51.92 -0.42 0.14 16 33 H 0.08 1.28 8.07 -51.93 -0.42 0.86 16 34 H 0.06 0.73 6.44 -51.93 -0.33 0.40 16 35 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 36 H 0.04 1.27 7.42 -51.93 -0.39 0.89 16 37 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 38 H 0.05 0.61 7.40 -51.93 -0.38 0.23 16 39 H 0.10 1.08 7.19 -51.93 -0.37 0.70 16 40 H 0.36 4.90 8.43 -39.29 -0.33 4.57 16 41 H 0.03 0.23 8.14 -51.93 -0.42 -0.19 16 42 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.40 1.03 7.38 -40.82 -0.30 0.72 16 46 H 0.19 -0.43 7.44 -52.49 -0.39 -0.82 16 47 H 0.16 1.04 8.06 -52.49 -0.42 0.61 16 LS Contribution 411.67 15.07 6.20 6.20 Total: -1.00 -39.06 411.67 -7.77 -46.83 By element: Atomic # 1 Polarization: 4.98 SS G_CDS: -6.58 Total: -1.60 kcal Atomic # 6 Polarization: 10.74 SS G_CDS: -2.53 Total: 8.21 kcal Atomic # 7 Polarization: -56.08 SS G_CDS: -0.03 Total: -56.10 kcal Atomic # 8 Polarization: -20.32 SS G_CDS: 0.18 Total: -20.15 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -39.06 -7.77 -46.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001125987934.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.995 kcal (2) G-P(sol) polarization free energy of solvation -39.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds